data_6FBZ # _model_server_result.job_id 5_uYNmQvNZn6PsCI36TrXQ _model_server_result.datetime_utc '2024-11-27 20:04:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6FBZ # _exptl.entry_id 6FBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FBZ _cell.length_a 63.96 _cell.length_b 75.354 _cell.length_c 48.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 237 n n PA O2A MGP doub 238 n n PA O3A MGP sing 239 n n PA O5' MGP sing 240 n n O3A PB MGP sing 241 n n O5' C5' MGP sing 242 n n PB O1B MGP sing 243 n n PB O2B MGP doub 244 n n PB O3B MGP sing 245 n n O3B PC MGP sing 246 n n PC O1C MGP sing 247 n n PC O2C MGP doub 248 n n PC O3C MGP sing 249 n n C5' C4' MGP sing 250 n n C5' H5' MGP sing 251 n n C5' "H5'A" MGP sing 252 n n C4' O4' MGP sing 253 n n C4' C3' MGP sing 254 n n C4' H4' MGP sing 255 n n O4' C1' MGP sing 256 n n C3' O3' MGP sing 257 n n C3' C2' MGP sing 258 n n C3' H3' MGP sing 259 n n O3' HO3' MGP sing 260 n n C2' O2' MGP sing 261 n n C2' C1' MGP sing 262 n n C2' H2' MGP sing 263 n n O2' HO2' MGP sing 264 n n C1' N9 MGP sing 265 n n C1' H1' MGP sing 266 n n N9 C8 MGP sing 267 n y N9 C4 MGP sing 268 n y C8 N7 MGP doub 269 n y C8 H8 MGP sing 270 n n N7 CM7 MGP sing 271 n n N7 C5 MGP sing 272 n y CM7 HM7 MGP sing 273 n n CM7 HM7A MGP sing 274 n n CM7 HM7B MGP sing 275 n n C5 C6 MGP sing 276 n n C5 C4 MGP doub 277 n y C6 O6 MGP doub 278 n n C6 N1 MGP sing 279 n n N1 C2 MGP sing 280 n n N1 HN1 MGP sing 281 n n C2 N2 MGP sing 282 n n C2 N3 MGP doub 283 n n N2 HN2 MGP sing 284 n n N2 HN2A MGP sing 285 n n N3 C4 MGP sing 286 n n O1A H16 MGP sing 287 n n O1B H17 MGP sing 288 n n O1C H18 MGP sing 289 n n O3C H19 MGP sing 290 n n # _atom_sites.entry_id 6FBZ _atom_sites.fract_transf_matrix[1][1] 0.015635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGP A 1 301 1 MGP MGP . D 4 HOH A 1 401 80 HOH HOH . D 4 HOH A 2 402 25 HOH HOH . D 4 HOH A 3 403 105 HOH HOH . D 4 HOH A 4 404 37 HOH HOH . D 4 HOH A 5 405 36 HOH HOH . D 4 HOH A 6 406 114 HOH HOH . D 4 HOH A 7 407 89 HOH HOH . D 4 HOH A 8 408 131 HOH HOH . D 4 HOH A 9 409 57 HOH HOH . D 4 HOH A 10 410 49 HOH HOH . D 4 HOH A 11 411 98 HOH HOH . D 4 HOH A 12 412 106 HOH HOH . D 4 HOH A 13 413 47 HOH HOH . D 4 HOH A 14 414 95 HOH HOH . D 4 HOH A 15 415 6 HOH HOH . D 4 HOH A 16 416 13 HOH HOH . D 4 HOH A 17 417 122 HOH HOH . D 4 HOH A 18 418 125 HOH HOH . D 4 HOH A 19 419 113 HOH HOH . D 4 HOH A 20 420 15 HOH HOH . D 4 HOH A 21 421 39 HOH HOH . D 4 HOH A 22 422 64 HOH HOH . D 4 HOH A 23 423 12 HOH HOH . D 4 HOH A 24 424 9 HOH HOH . D 4 HOH A 25 425 32 HOH HOH . D 4 HOH A 26 426 29 HOH HOH . D 4 HOH A 27 427 111 HOH HOH . D 4 HOH A 28 428 110 HOH HOH . D 4 HOH A 29 429 132 HOH HOH . D 4 HOH A 30 430 62 HOH HOH . D 4 HOH A 31 431 90 HOH HOH . D 4 HOH A 32 432 118 HOH HOH . D 4 HOH A 33 433 46 HOH HOH . D 4 HOH A 34 434 4 HOH HOH . D 4 HOH A 35 435 1 HOH HOH . D 4 HOH A 36 436 58 HOH HOH . D 4 HOH A 37 437 104 HOH HOH . D 4 HOH A 38 438 54 HOH HOH . D 4 HOH A 39 439 73 HOH HOH . D 4 HOH A 40 440 97 HOH HOH . D 4 HOH A 41 441 116 HOH HOH . D 4 HOH A 42 442 81 HOH HOH . D 4 HOH A 43 443 69 HOH HOH . D 4 HOH A 44 444 11 HOH HOH . D 4 HOH A 45 445 92 HOH HOH . D 4 HOH A 46 446 10 HOH HOH . D 4 HOH A 47 447 31 HOH HOH . D 4 HOH A 48 448 28 HOH HOH . D 4 HOH A 49 449 117 HOH HOH . D 4 HOH A 50 450 72 HOH HOH . D 4 HOH A 51 451 127 HOH HOH . D 4 HOH A 52 452 17 HOH HOH . D 4 HOH A 53 453 7 HOH HOH . D 4 HOH A 54 454 52 HOH HOH . D 4 HOH A 55 455 16 HOH HOH . D 4 HOH A 56 456 20 HOH HOH . D 4 HOH A 57 457 34 HOH HOH . D 4 HOH A 58 458 40 HOH HOH . D 4 HOH A 59 459 48 HOH HOH . D 4 HOH A 60 460 5 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 103 HOH HOH . D 4 HOH A 63 463 61 HOH HOH . D 4 HOH A 64 464 23 HOH HOH . D 4 HOH A 65 465 108 HOH HOH . D 4 HOH A 66 466 53 HOH HOH . D 4 HOH A 67 467 50 HOH HOH . D 4 HOH A 68 468 65 HOH HOH . D 4 HOH A 69 469 96 HOH HOH . D 4 HOH A 70 470 3 HOH HOH . D 4 HOH A 71 471 109 HOH HOH . D 4 HOH A 72 472 74 HOH HOH . D 4 HOH A 73 473 43 HOH HOH . D 4 HOH A 74 474 27 HOH HOH . D 4 HOH A 75 475 134 HOH HOH . D 4 HOH A 76 476 99 HOH HOH . D 4 HOH A 77 477 33 HOH HOH . D 4 HOH A 78 478 2 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 56 HOH HOH . D 4 HOH A 81 481 112 HOH HOH . D 4 HOH A 82 482 84 HOH HOH . D 4 HOH A 83 483 119 HOH HOH . D 4 HOH A 84 484 83 HOH HOH . D 4 HOH A 85 485 124 HOH HOH . D 4 HOH A 86 486 133 HOH HOH . D 4 HOH A 87 487 59 HOH HOH . D 4 HOH A 88 488 91 HOH HOH . D 4 HOH A 89 489 123 HOH HOH . D 4 HOH A 90 490 88 HOH HOH . D 4 HOH A 91 491 82 HOH HOH . D 4 HOH A 92 492 70 HOH HOH . E 4 HOH B 1 1101 21 HOH HOH . E 4 HOH B 2 1102 126 HOH HOH . E 4 HOH B 3 1103 102 HOH HOH . E 4 HOH B 4 1104 87 HOH HOH . E 4 HOH B 5 1105 8 HOH HOH . E 4 HOH B 6 1106 38 HOH HOH . E 4 HOH B 7 1107 75 HOH HOH . E 4 HOH B 8 1108 22 HOH HOH . E 4 HOH B 9 1109 19 HOH HOH . E 4 HOH B 10 1110 85 HOH HOH . E 4 HOH B 11 1111 93 HOH HOH . E 4 HOH B 12 1112 45 HOH HOH . E 4 HOH B 13 1113 78 HOH HOH . E 4 HOH B 14 1114 76 HOH HOH . E 4 HOH B 15 1115 35 HOH HOH . E 4 HOH B 16 1116 94 HOH HOH . E 4 HOH B 17 1117 30 HOH HOH . E 4 HOH B 18 1118 44 HOH HOH . E 4 HOH B 19 1119 41 HOH HOH . E 4 HOH B 20 1120 26 HOH HOH . E 4 HOH B 21 1121 51 HOH HOH . E 4 HOH B 22 1122 24 HOH HOH . E 4 HOH B 23 1123 14 HOH HOH . E 4 HOH B 24 1124 42 HOH HOH . E 4 HOH B 25 1125 115 HOH HOH . E 4 HOH B 26 1126 130 HOH HOH . E 4 HOH B 27 1127 55 HOH HOH . E 4 HOH B 28 1128 60 HOH HOH . E 4 HOH B 29 1129 101 HOH HOH . E 4 HOH B 30 1130 66 HOH HOH . E 4 HOH B 31 1131 86 HOH HOH . E 4 HOH B 32 1132 68 HOH HOH . E 4 HOH B 33 1133 18 HOH HOH . E 4 HOH B 34 1134 129 HOH HOH . E 4 HOH B 35 1135 67 HOH HOH . E 4 HOH B 36 1136 77 HOH HOH . E 4 HOH B 37 1137 120 HOH HOH . E 4 HOH B 38 1138 128 HOH HOH . E 4 HOH B 39 1139 71 HOH HOH . E 4 HOH B 40 1140 100 HOH HOH . E 4 HOH B 41 1141 107 HOH HOH . E 4 HOH B 42 1142 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . C 3 79.029 37.155 21.556 1 51.85 ? PA MGP 301 A 1 HETATM 2 O O1A MGP . . . C 3 78.362 36.364 22.76 1 70.09 ? O1A MGP 301 A 1 HETATM 3 O O2A MGP . . . C 3 79.607 36.213 20.584 1 165.92 ? O2A MGP 301 A 1 HETATM 4 O O3A MGP . . . C 3 80.096 38.155 22.235 1 68.13 ? O3A MGP 301 A 1 HETATM 5 O O5' MGP . . . C 3 77.927 38.154 21.056 1 54.96 ? O5' MGP 301 A 1 HETATM 6 P PB MGP . . . C 3 81.564 38.593 21.918 1 88.02 ? PB MGP 301 A 1 HETATM 7 O O1B MGP . . . C 3 82.537 37.527 22.376 1 74.17 ? O1B MGP 301 A 1 HETATM 8 O O2B MGP . . . C 3 81.857 38.916 20.574 1 61.16 ? O2B MGP 301 A 1 HETATM 9 O O3B MGP . . . C 3 81.766 39.712 23.008 1 144 ? O3B MGP 301 A 1 HETATM 10 P PC MGP . . . C 3 81.021 41.02 23.518 1 98.96 ? PC MGP 301 A 1 HETATM 11 O O1C MGP . . . C 3 80.075 41.56 22.409 1 65.38 ? O1C MGP 301 A 1 HETATM 12 O O2C MGP . . . C 3 82.112 41.971 23.713 1 63.91 ? O2C MGP 301 A 1 HETATM 13 O O3C MGP . . . C 3 80.273 40.701 24.86 1 81.29 ? O3C MGP 301 A 1 HETATM 14 C C5' MGP . . . C 3 78.276 39.229 20.201 1 60.13 ? C5' MGP 301 A 1 HETATM 15 C C4' MGP . . . C 3 77.133 40.238 20.347 1 53.13 ? C4' MGP 301 A 1 HETATM 16 O O4' MGP . . . C 3 75.948 39.704 19.723 1 84.4 ? O4' MGP 301 A 1 HETATM 17 C C3' MGP . . . C 3 76.757 40.548 21.817 1 77.34 ? C3' MGP 301 A 1 HETATM 18 O O3' MGP . . . C 3 77.529 41.619 22.256 1 56.45 ? O3' MGP 301 A 1 HETATM 19 C C2' MGP . . . C 3 75.279 40.989 21.648 1 101.33 ? C2' MGP 301 A 1 HETATM 20 O O2' MGP . . . C 3 75.35 42.318 21.256 1 82.36 ? O2' MGP 301 A 1 HETATM 21 C C1' MGP . . . C 3 74.793 40.063 20.446 1 116.27 ? C1' MGP 301 A 1 HETATM 22 N N9 MGP . . . C 3 74.122 38.729 20.854 1 72.53 ? N9 MGP 301 A 1 HETATM 23 C C8 MGP . . . C 3 74.694 37.455 20.713 1 77.5 ? C8 MGP 301 A 1 HETATM 24 N N7 MGP . . . C 3 73.821 36.476 21.139 1 58.86 1 N7 MGP 301 A 1 HETATM 25 C CM7 MGP . . . C 3 74.057 35.024 21.118 1 67.28 ? CM7 MGP 301 A 1 HETATM 26 C C5 MGP . . . C 3 72.668 37.092 21.59 1 64.95 ? C5 MGP 301 A 1 HETATM 27 C C6 MGP . . . C 3 71.48 36.465 22.181 1 93.38 ? C6 MGP 301 A 1 HETATM 28 O O6 MGP . . . C 3 71.366 35.289 22.474 1 41.86 ? O6 MGP 301 A 1 HETATM 29 N N1 MGP . . . C 3 70.418 37.394 22.507 1 40.77 ? N1 MGP 301 A 1 HETATM 30 C C2 MGP . . . C 3 70.648 38.8 22.244 1 71.75 ? C2 MGP 301 A 1 HETATM 31 N N2 MGP . . . C 3 69.624 39.694 22.439 1 73.02 ? N2 MGP 301 A 1 HETATM 32 N N3 MGP . . . C 3 71.838 39.389 21.728 1 68.49 ? N3 MGP 301 A 1 HETATM 33 C C4 MGP . . . C 3 72.824 38.515 21.405 1 50.63 ? C4 MGP 301 A 1 HETATM 34 H H5' MGP . . . C 3 79.221 39.665 20.52 1 72.16 ? H5' MGP 301 A 1 HETATM 35 H "H5'A" MGP . . . C 3 78.415 38.868 19.183 1 72.16 ? "H5'A" MGP 301 A 1 HETATM 36 H H4' MGP . . . C 3 77.371 41.148 19.798 1 63.76 ? H4' MGP 301 A 1 HETATM 37 H H3' MGP . . . C 3 76.818 39.667 22.455 1 92.81 ? H3' MGP 301 A 1 HETATM 38 H HO3' MGP . . . C 3 78.208 41.263 22.887 1 67.75 ? HO3' MGP 301 A 1 HETATM 39 H H2' MGP . . . C 3 74.708 40.843 22.563 1 121.61 ? H2' MGP 301 A 1 HETATM 40 H HO2' MGP . . . C 3 74.534 42.772 21.594 1 98.84 ? HO2' MGP 301 A 1 HETATM 41 H H1' MGP . . . C 3 74.094 40.557 19.773 1 139.53 ? H1' MGP 301 A 1 HETATM 42 H H8 MGP . . . C 3 75.693 37.279 20.318 1 93 ? H8 MGP 301 A 1 HETATM 43 H HM7 MGP . . . C 3 73.112 34.499 20.99 1 80.75 ? HM7 MGP 301 A 1 HETATM 44 H HM7A MGP . . . C 3 74.511 34.704 22.055 1 80.75 ? HM7A MGP 301 A 1 HETATM 45 H HM7B MGP . . . C 3 74.719 34.77 20.292 1 80.75 ? HM7B MGP 301 A 1 HETATM 46 H HN1 MGP . . . C 3 69.555 37.037 22.905 1 48.93 ? HN1 MGP 301 A 1 HETATM 47 H HN2 MGP . . . C 3 68.701 39.421 22.762 1 87.63 ? HN2 MGP 301 A 1 HETATM 48 H HN2A MGP . . . C 3 69.769 40.682 22.259 1 87.63 ? HN2A MGP 301 A 1 HETATM 49 H H16 MGP . . . C 3 78.763 35.834 23.498 1 84.11 ? H16 MGP 301 A 1 HETATM 50 H H17 MGP . . . C 3 82.757 37.27 23.309 1 89 ? H17 MGP 301 A 1 HETATM 51 H H18 MGP . . . C 3 79.652 42.458 22.445 1 78.46 ? H18 MGP 301 A 1 HETATM 52 H H19 MGP . . . C 3 79.592 41.348 25.183 1 97.56 ? H19 MGP 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 52 #