data_6FC3 # _model_server_result.job_id yBcKxN59pKmUO0bh_Saa1Q _model_server_result.datetime_utc '2024-10-19 06:38:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6FC3 # _exptl.entry_id 6FC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.99 _cell.angle_gamma 90 _cell.entry_id 6FC3 _cell.length_a 102.016 _cell.length_b 62.755 _cell.length_c 44.732 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 53 A GLU 83 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A OE2 GLU 53 A GLU 83 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A OE1 GLU 53 A GLU 83 1_555 C ZN ZN . A ZN 301 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc4 A OD2 ASP 160 A ASP 190 1_555 E ZN ZN . B ZN 101 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc5 A NE2 HIS 163 A HIS 193 1_555 E ZN ZN . B ZN 101 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 C ZN ZN . A ZN 301 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 C ZN ZN . A ZN 301 1_555 F O HOH . A HOH 422 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 C ZN ZN . A ZN 301 1_555 F O HOH . A HOH 495 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc9 B NE2 HIS 42 B HIS 39 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 B OE1 GLU 47 B GLU 44 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc11 B OE2 GLU 47 B GLU 44 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6FC3 _atom_sites.fract_transf_matrix[1][1] 0.009802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002995 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 2 ZN ZN . D 4 GOL A 1 302 1 GOL GOL . E 3 ZN B 1 101 1 ZN ZN . F 5 HOH A 1 401 208 HOH HOH . F 5 HOH A 2 402 165 HOH HOH . F 5 HOH A 3 403 199 HOH HOH . F 5 HOH A 4 404 195 HOH HOH . F 5 HOH A 5 405 179 HOH HOH . F 5 HOH A 6 406 172 HOH HOH . F 5 HOH A 7 407 100 HOH HOH . F 5 HOH A 8 408 36 HOH HOH . F 5 HOH A 9 409 184 HOH HOH . F 5 HOH A 10 410 109 HOH HOH . F 5 HOH A 11 411 200 HOH HOH . F 5 HOH A 12 412 137 HOH HOH . F 5 HOH A 13 413 138 HOH HOH . F 5 HOH A 14 414 27 HOH HOH . F 5 HOH A 15 415 25 HOH HOH . F 5 HOH A 16 416 94 HOH HOH . F 5 HOH A 17 417 119 HOH HOH . F 5 HOH A 18 418 150 HOH HOH . F 5 HOH A 19 419 23 HOH HOH . F 5 HOH A 20 420 41 HOH HOH . F 5 HOH A 21 421 39 HOH HOH . F 5 HOH A 22 422 198 HOH HOH . F 5 HOH A 23 423 45 HOH HOH . F 5 HOH A 24 424 34 HOH HOH . F 5 HOH A 25 425 147 HOH HOH . F 5 HOH A 26 426 9 HOH HOH . F 5 HOH A 27 427 134 HOH HOH . F 5 HOH A 28 428 162 HOH HOH . F 5 HOH A 29 429 75 HOH HOH . F 5 HOH A 30 430 2 HOH HOH . F 5 HOH A 31 431 32 HOH HOH . F 5 HOH A 32 432 57 HOH HOH . F 5 HOH A 33 433 91 HOH HOH . F 5 HOH A 34 434 66 HOH HOH . F 5 HOH A 35 435 145 HOH HOH . F 5 HOH A 36 436 76 HOH HOH . F 5 HOH A 37 437 193 HOH HOH . F 5 HOH A 38 438 29 HOH HOH . F 5 HOH A 39 439 68 HOH HOH . F 5 HOH A 40 440 33 HOH HOH . F 5 HOH A 41 441 132 HOH HOH . F 5 HOH A 42 442 26 HOH HOH . F 5 HOH A 43 443 70 HOH HOH . F 5 HOH A 44 444 72 HOH HOH . F 5 HOH A 45 445 8 HOH HOH . F 5 HOH A 46 446 18 HOH HOH . F 5 HOH A 47 447 15 HOH HOH . F 5 HOH A 48 448 49 HOH HOH . F 5 HOH A 49 449 59 HOH HOH . F 5 HOH A 50 450 47 HOH HOH . F 5 HOH A 51 451 60 HOH HOH . F 5 HOH A 52 452 7 HOH HOH . F 5 HOH A 53 453 74 HOH HOH . F 5 HOH A 54 454 67 HOH HOH . F 5 HOH A 55 455 97 HOH HOH . F 5 HOH A 56 456 19 HOH HOH . F 5 HOH A 57 457 144 HOH HOH . F 5 HOH A 58 458 6 HOH HOH . F 5 HOH A 59 459 21 HOH HOH . F 5 HOH A 60 460 106 HOH HOH . F 5 HOH A 61 461 174 HOH HOH . F 5 HOH A 62 462 13 HOH HOH . F 5 HOH A 63 463 111 HOH HOH . F 5 HOH A 64 464 42 HOH HOH . F 5 HOH A 65 465 69 HOH HOH . F 5 HOH A 66 466 52 HOH HOH . F 5 HOH A 67 467 187 HOH HOH . F 5 HOH A 68 468 124 HOH HOH . F 5 HOH A 69 469 4 HOH HOH . F 5 HOH A 70 470 171 HOH HOH . F 5 HOH A 71 471 10 HOH HOH . F 5 HOH A 72 472 188 HOH HOH . F 5 HOH A 73 473 12 HOH HOH . F 5 HOH A 74 474 61 HOH HOH . F 5 HOH A 75 475 46 HOH HOH . F 5 HOH A 76 476 44 HOH HOH . F 5 HOH A 77 477 107 HOH HOH . F 5 HOH A 78 478 14 HOH HOH . F 5 HOH A 79 479 62 HOH HOH . F 5 HOH A 80 480 175 HOH HOH . F 5 HOH A 81 481 53 HOH HOH . F 5 HOH A 82 482 110 HOH HOH . F 5 HOH A 83 483 166 HOH HOH . F 5 HOH A 84 484 35 HOH HOH . F 5 HOH A 85 485 3 HOH HOH . F 5 HOH A 86 486 96 HOH HOH . F 5 HOH A 87 487 30 HOH HOH . F 5 HOH A 88 488 181 HOH HOH . F 5 HOH A 89 489 55 HOH HOH . F 5 HOH A 90 490 63 HOH HOH . F 5 HOH A 91 491 190 HOH HOH . F 5 HOH A 92 492 142 HOH HOH . F 5 HOH A 93 493 20 HOH HOH . F 5 HOH A 94 494 24 HOH HOH . F 5 HOH A 95 495 161 HOH HOH . F 5 HOH A 96 496 11 HOH HOH . F 5 HOH A 97 497 5 HOH HOH . F 5 HOH A 98 498 71 HOH HOH . F 5 HOH A 99 499 85 HOH HOH . F 5 HOH A 100 500 16 HOH HOH . F 5 HOH A 101 501 164 HOH HOH . F 5 HOH A 102 502 210 HOH HOH . F 5 HOH A 103 503 17 HOH HOH . F 5 HOH A 104 504 64 HOH HOH . F 5 HOH A 105 505 139 HOH HOH . F 5 HOH A 106 506 95 HOH HOH . F 5 HOH A 107 507 56 HOH HOH . F 5 HOH A 108 508 163 HOH HOH . F 5 HOH A 109 509 130 HOH HOH . F 5 HOH A 110 510 129 HOH HOH . F 5 HOH A 111 511 209 HOH HOH . F 5 HOH A 112 512 118 HOH HOH . F 5 HOH A 113 513 178 HOH HOH . F 5 HOH A 114 514 183 HOH HOH . F 5 HOH A 115 515 116 HOH HOH . F 5 HOH A 116 516 140 HOH HOH . F 5 HOH A 117 517 115 HOH HOH . F 5 HOH A 118 518 98 HOH HOH . F 5 HOH A 119 519 157 HOH HOH . F 5 HOH A 120 520 160 HOH HOH . F 5 HOH A 121 521 152 HOH HOH . F 5 HOH A 122 522 77 HOH HOH . F 5 HOH A 123 523 122 HOH HOH . F 5 HOH A 124 524 180 HOH HOH . F 5 HOH A 125 525 201 HOH HOH . F 5 HOH A 126 526 28 HOH HOH . F 5 HOH A 127 527 173 HOH HOH . F 5 HOH A 128 528 168 HOH HOH . F 5 HOH A 129 529 58 HOH HOH . F 5 HOH A 130 530 148 HOH HOH . F 5 HOH A 131 531 182 HOH HOH . F 5 HOH A 132 532 73 HOH HOH . F 5 HOH A 133 533 143 HOH HOH . F 5 HOH A 134 534 194 HOH HOH . F 5 HOH A 135 535 136 HOH HOH . F 5 HOH A 136 536 92 HOH HOH . F 5 HOH A 137 537 127 HOH HOH . F 5 HOH A 138 538 117 HOH HOH . F 5 HOH A 139 539 146 HOH HOH . F 5 HOH A 140 540 151 HOH HOH . F 5 HOH A 141 541 186 HOH HOH . F 5 HOH A 142 542 86 HOH HOH . F 5 HOH A 143 543 153 HOH HOH . F 5 HOH A 144 544 189 HOH HOH . F 5 HOH A 145 545 202 HOH HOH . F 5 HOH A 146 546 50 HOH HOH . F 5 HOH A 147 547 105 HOH HOH . F 5 HOH A 148 548 51 HOH HOH . F 5 HOH A 149 549 158 HOH HOH . F 5 HOH A 150 550 167 HOH HOH . F 5 HOH A 151 551 87 HOH HOH . F 5 HOH A 152 552 120 HOH HOH . F 5 HOH A 153 553 197 HOH HOH . F 5 HOH A 154 554 169 HOH HOH . F 5 HOH A 155 555 78 HOH HOH . F 5 HOH A 156 556 191 HOH HOH . F 5 HOH A 157 557 177 HOH HOH . F 5 HOH A 158 558 159 HOH HOH . F 5 HOH A 159 559 99 HOH HOH . F 5 HOH A 160 560 93 HOH HOH . F 5 HOH A 161 561 149 HOH HOH . F 5 HOH A 162 562 185 HOH HOH . G 5 HOH B 1 201 113 HOH HOH . G 5 HOH B 2 202 48 HOH HOH . G 5 HOH B 3 203 89 HOH HOH . G 5 HOH B 4 204 125 HOH HOH . G 5 HOH B 5 205 170 HOH HOH . G 5 HOH B 6 206 80 HOH HOH . G 5 HOH B 7 207 40 HOH HOH . G 5 HOH B 8 208 31 HOH HOH . G 5 HOH B 9 209 114 HOH HOH . G 5 HOH B 10 210 82 HOH HOH . G 5 HOH B 11 211 135 HOH HOH . G 5 HOH B 12 212 121 HOH HOH . G 5 HOH B 13 213 37 HOH HOH . G 5 HOH B 14 214 22 HOH HOH . G 5 HOH B 15 215 104 HOH HOH . G 5 HOH B 16 216 38 HOH HOH . G 5 HOH B 17 217 1 HOH HOH . G 5 HOH B 18 218 90 HOH HOH . G 5 HOH B 19 219 84 HOH HOH . G 5 HOH B 20 220 126 HOH HOH . G 5 HOH B 21 221 203 HOH HOH . G 5 HOH B 22 222 108 HOH HOH . G 5 HOH B 23 223 196 HOH HOH . G 5 HOH B 24 224 43 HOH HOH . G 5 HOH B 25 225 101 HOH HOH . G 5 HOH B 26 226 103 HOH HOH . G 5 HOH B 27 227 83 HOH HOH . G 5 HOH B 28 228 206 HOH HOH . G 5 HOH B 29 229 102 HOH HOH . G 5 HOH B 30 230 79 HOH HOH . G 5 HOH B 31 231 154 HOH HOH . G 5 HOH B 32 232 81 HOH HOH . G 5 HOH B 33 233 54 HOH HOH . G 5 HOH B 34 234 131 HOH HOH . G 5 HOH B 35 235 88 HOH HOH . G 5 HOH B 36 236 112 HOH HOH . G 5 HOH B 37 237 65 HOH HOH . G 5 HOH B 38 238 207 HOH HOH . G 5 HOH B 39 239 176 HOH HOH . G 5 HOH B 40 240 204 HOH HOH . G 5 HOH B 41 241 155 HOH HOH . G 5 HOH B 42 242 141 HOH HOH . G 5 HOH B 43 243 156 HOH HOH . G 5 HOH B 44 244 128 HOH HOH . G 5 HOH B 45 245 123 HOH HOH . G 5 HOH B 46 246 133 HOH HOH . G 5 HOH B 47 247 205 HOH HOH . G 5 HOH B 48 248 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 24.088 27.549 18.944 1 49.43 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 4 25.472 27.663 18.718 1 74.95 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 4 23.412 27.386 17.596 1 38.31 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 4 24.266 26.636 16.806 1 38.79 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 4 22.069 26.679 17.632 1 43.33 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 4 21.519 26.642 16.34 1 63.15 ? O3 GOL 302 A 1 HETATM 7 H H11 GOL . . . D 4 23.881 26.685 19.575 1 59.34 ? H11 GOL 302 A 1 HETATM 8 H H12 GOL . . . D 4 23.715 28.442 19.445 1 59.34 ? H12 GOL 302 A 1 HETATM 9 H HO1 GOL . . . D 4 25.929 27.836 19.568 1 89.96 ? HO1 GOL 302 A 1 HETATM 10 H H2 GOL . . . D 4 23.274 28.373 17.154 1 45.99 ? H2 GOL 302 A 1 HETATM 11 H HO2 GOL . . . D 4 24.355 25.736 17.184 1 46.57 ? HO2 GOL 302 A 1 HETATM 12 H H31 GOL . . . D 4 22.198 25.663 18.007 1 52.02 ? H31 GOL 302 A 1 HETATM 13 H H32 GOL . . . D 4 21.394 27.207 18.305 1 52.02 ? H32 GOL 302 A 1 HETATM 14 H HO3 GOL . . . D 4 20.977 25.832 16.239 1 75.8 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #