data_6FCB # _model_server_result.job_id y9epYHIeP_5qMmcdL-2D3g _model_server_result.datetime_utc '2024-12-08 02:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6FCB # _exptl.entry_id 6FCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.97 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(DIPHOSPHONO)AMINOPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FCB _cell.length_a 66.33 _cell.length_b 94.87 _cell.length_c 117.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 31 A ASP 31 1_555 C MG MG . A MG 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A OD2 ASP 31 A ASP 31 1_555 C MG MG . A MG 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A OE2 GLU 57 A GLU 57 1_555 E K K . A K 404 2_555 ? ? ? ? A ? ? ? ? ? ? ? 2.754 ? metalc ? metalc4 A OD1 ASP 258 A ASP 258 1_555 E K K . A K 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.036 ? metalc ? metalc5 A OD2 ASP 258 A ASP 258 1_555 E K K . A K 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.349 ? metalc ? metalc6 A O ALA 259 A ALA 259 1_555 E K K . A K 404 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.614 ? metalc ? metalc7 A OD2 ASP 291 A ASP 291 1_555 D MG MG . A MG 403 2_555 ? ? ? ? A ? ? ? ? ? ? ? 2.693 ? metalc ? metalc8 B O2G PPK . A PPK 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.563 ? metalc ? metalc9 B O1B PPK . A PPK 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.485 ? metalc ? metalc10 B O3G PPK . A PPK 401 1_555 D MG MG . A MG 403 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.363 ? metalc ? metalc11 B O4A PPK . A PPK 401 1_555 D MG MG . A MG 403 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.226 ? metalc ? metalc12 B O1B PPK . A PPK 401 1_555 E K K . A K 404 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.821 ? # _chem_comp.formula 'H6 N O9 P3' _chem_comp.formula_weight 256.97 _chem_comp.id PPK _chem_comp.mon_nstd_flag . _chem_comp.name '(DIPHOSPHONO)AMINOPHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1G PG PPK sing 276 n n O1G H1G PPK sing 277 n n PG O2G PPK sing 278 n n PG O3G PPK doub 279 n n PG N3B PPK sing 280 n n O2G H2G PPK sing 281 n n N3B PB PPK sing 282 n n N3B H3B PPK sing 283 n n PB O1B PPK sing 284 n n PB O2B PPK doub 285 n n PB O3A PPK sing 286 n n O1B H1B PPK sing 287 n n O3A PA PPK sing 288 n n PA O1A PPK sing 289 n n PA O2A PPK sing 290 n n PA O4A PPK doub 291 n n O1A H1A PPK sing 292 n n O2A H2A PPK sing 293 n n # _atom_sites.entry_id 6FCB _atom_sites.fract_transf_matrix[1][1] 0.015076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PPK A 1 401 400 PPK PPK . C 3 MG A 1 402 401 MG MG . D 3 MG A 1 403 402 MG MG . E 4 K A 1 404 403 K K . F 5 SAM A 1 405 405 SAM SAM . G 6 PEG A 1 406 412 PEG PEG . H 7 HOH A 1 501 418 HOH HOH . H 7 HOH A 2 502 417 HOH HOH . H 7 HOH A 3 503 419 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1G PPK . A . B 2 4.735 -3.781 -21.775 1 39.82 ? O1G PPK 401 A 1 HETATM 2 P PG PPK . A . B 2 4.94 -5.173 -21.362 1 45.45 ? PG PPK 401 A 1 HETATM 3 O O2G PPK . A . B 2 3.953 -5.445 -20.107 1 38.66 ? O2G PPK 401 A 1 HETATM 4 O O3G PPK . A . B 2 4.601 -6.149 -22.612 1 49.17 ? O3G PPK 401 A 1 HETATM 5 N N3B PPK . A . B 2 6.596 -5.59 -20.928 1 47.35 ? N3B PPK 401 A 1 HETATM 6 P PB PPK . A . B 2 6.921 -6.711 -19.604 1 50.93 ? PB PPK 401 A 1 HETATM 7 O O1B PPK . A . B 2 5.807 -6.563 -18.439 1 43.57 ? O1B PPK 401 A 1 HETATM 8 O O2B PPK . A . B 2 8.272 -6.515 -19.038 1 51.43 ? O2B PPK 401 A 1 HETATM 9 O O3A PPK . A . B 2 6.792 -8.188 -20.23 1 49.2 ? O3A PPK 401 A 1 HETATM 10 P PA PPK . A . B 2 5.361 -8.84 -20.599 1 44.28 ? PA PPK 401 A 1 HETATM 11 O O1A PPK . A . B 2 4.418 -8.13 -19.657 1 45.66 ? O1A PPK 401 A 1 HETATM 12 O O2A PPK . A . B 2 5.537 -10.294 -20.335 1 36.76 ? O2A PPK 401 A 1 HETATM 13 O O4A PPK . A . B 2 5.145 -8.514 -22.07 1 44.34 ? O4A PPK 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 151 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 43 _model_server_stats.element_count 13 #