data_6FCL # _model_server_result.job_id 6MSQbGPbVJrkQFAts8AMTA _model_server_result.datetime_utc '2024-11-07 19:05:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fcl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 6FCL # _exptl.entry_id 6FCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.87 _cell.angle_beta 61.42 _cell.angle_gamma 69.33 _cell.entry_id 6FCL _cell.length_a 47.55 _cell.length_b 47.94 _cell.length_c 47.94 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6FCL _atom_sites.fract_transf_matrix[1][1] 0.02103 _atom_sites.fract_transf_matrix[1][2] -0.007934 _atom_sites.fract_transf_matrix[1][3] -0.010921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022295 _atom_sites.fract_transf_matrix[2][3] -0.001586 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 200 200 AMP AMP . D 2 AMP B 1 200 200 AMP AMP . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 302 302 HOH HOH . E 3 HOH A 3 303 303 HOH HOH . E 3 HOH A 4 304 304 HOH HOH . E 3 HOH A 5 305 305 HOH HOH . E 3 HOH A 6 306 306 HOH HOH . E 3 HOH A 7 307 307 HOH HOH . E 3 HOH A 8 308 308 HOH HOH . E 3 HOH A 9 309 309 HOH HOH . E 3 HOH A 10 310 310 HOH HOH . E 3 HOH A 11 311 311 HOH HOH . E 3 HOH A 12 312 312 HOH HOH . E 3 HOH A 13 313 313 HOH HOH . E 3 HOH A 14 314 314 HOH HOH . E 3 HOH A 15 315 315 HOH HOH . E 3 HOH A 16 316 316 HOH HOH . E 3 HOH A 17 317 317 HOH HOH . E 3 HOH A 18 318 318 HOH HOH . E 3 HOH A 19 319 319 HOH HOH . E 3 HOH A 20 320 320 HOH HOH . E 3 HOH A 21 321 321 HOH HOH . E 3 HOH A 22 322 322 HOH HOH . E 3 HOH A 23 323 323 HOH HOH . E 3 HOH A 24 324 324 HOH HOH . E 3 HOH A 25 325 325 HOH HOH . E 3 HOH A 26 326 326 HOH HOH . E 3 HOH A 27 327 327 HOH HOH . E 3 HOH A 28 328 328 HOH HOH . E 3 HOH A 29 329 329 HOH HOH . E 3 HOH A 30 330 330 HOH HOH . E 3 HOH A 31 331 331 HOH HOH . E 3 HOH A 32 332 332 HOH HOH . E 3 HOH A 33 333 333 HOH HOH . E 3 HOH A 34 334 334 HOH HOH . E 3 HOH A 35 335 335 HOH HOH . E 3 HOH A 36 336 336 HOH HOH . E 3 HOH A 37 337 337 HOH HOH . E 3 HOH A 38 338 338 HOH HOH . E 3 HOH A 39 339 339 HOH HOH . E 3 HOH A 40 340 340 HOH HOH . E 3 HOH A 41 341 341 HOH HOH . E 3 HOH A 42 342 342 HOH HOH . E 3 HOH A 43 343 343 HOH HOH . E 3 HOH A 44 344 344 HOH HOH . E 3 HOH A 45 345 345 HOH HOH . E 3 HOH A 46 346 346 HOH HOH . E 3 HOH A 47 347 347 HOH HOH . E 3 HOH A 48 348 348 HOH HOH . E 3 HOH A 49 349 349 HOH HOH . E 3 HOH A 50 350 350 HOH HOH . E 3 HOH A 51 351 351 HOH HOH . E 3 HOH A 52 352 352 HOH HOH . E 3 HOH A 53 353 353 HOH HOH . E 3 HOH A 54 354 354 HOH HOH . E 3 HOH A 55 355 355 HOH HOH . E 3 HOH A 56 356 356 HOH HOH . E 3 HOH A 57 357 357 HOH HOH . E 3 HOH A 58 358 358 HOH HOH . E 3 HOH A 59 359 359 HOH HOH . E 3 HOH A 60 360 360 HOH HOH . E 3 HOH A 61 361 361 HOH HOH . E 3 HOH A 62 362 362 HOH HOH . E 3 HOH A 63 363 363 HOH HOH . E 3 HOH A 64 364 364 HOH HOH . E 3 HOH A 65 365 365 HOH HOH . E 3 HOH A 66 366 366 HOH HOH . E 3 HOH A 67 367 367 HOH HOH . E 3 HOH A 68 368 368 HOH HOH . E 3 HOH A 69 369 369 HOH HOH . E 3 HOH A 70 370 370 HOH HOH . E 3 HOH A 71 371 371 HOH HOH . E 3 HOH A 72 372 372 HOH HOH . E 3 HOH A 73 373 373 HOH HOH . E 3 HOH A 74 374 374 HOH HOH . E 3 HOH A 75 375 375 HOH HOH . E 3 HOH A 76 376 376 HOH HOH . E 3 HOH A 77 377 377 HOH HOH . E 3 HOH A 78 378 378 HOH HOH . E 3 HOH A 79 379 379 HOH HOH . E 3 HOH A 80 380 380 HOH HOH . E 3 HOH A 81 381 381 HOH HOH . E 3 HOH A 82 382 382 HOH HOH . E 3 HOH A 83 383 383 HOH HOH . E 3 HOH A 84 384 384 HOH HOH . E 3 HOH A 85 385 385 HOH HOH . E 3 HOH A 86 386 386 HOH HOH . E 3 HOH A 87 387 387 HOH HOH . E 3 HOH A 88 388 388 HOH HOH . E 3 HOH A 89 389 389 HOH HOH . E 3 HOH A 90 390 390 HOH HOH . E 3 HOH A 91 391 391 HOH HOH . E 3 HOH A 92 392 392 HOH HOH . E 3 HOH A 93 393 393 HOH HOH . E 3 HOH A 94 394 394 HOH HOH . E 3 HOH A 95 395 395 HOH HOH . E 3 HOH A 96 396 396 HOH HOH . E 3 HOH A 97 397 397 HOH HOH . E 3 HOH A 98 398 398 HOH HOH . E 3 HOH A 99 399 399 HOH HOH . E 3 HOH A 100 400 400 HOH HOH . E 3 HOH A 101 401 401 HOH HOH . E 3 HOH A 102 402 402 HOH HOH . E 3 HOH A 103 403 403 HOH HOH . E 3 HOH A 104 404 404 HOH HOH . E 3 HOH A 105 405 405 HOH HOH . E 3 HOH A 106 406 406 HOH HOH . F 3 HOH B 1 301 301 HOH HOH . F 3 HOH B 2 302 302 HOH HOH . F 3 HOH B 3 303 303 HOH HOH . F 3 HOH B 4 304 304 HOH HOH . F 3 HOH B 5 305 305 HOH HOH . F 3 HOH B 6 306 306 HOH HOH . F 3 HOH B 7 307 307 HOH HOH . F 3 HOH B 8 308 308 HOH HOH . F 3 HOH B 9 309 309 HOH HOH . F 3 HOH B 10 310 310 HOH HOH . F 3 HOH B 11 311 311 HOH HOH . F 3 HOH B 12 312 312 HOH HOH . F 3 HOH B 13 313 313 HOH HOH . F 3 HOH B 14 314 314 HOH HOH . F 3 HOH B 15 315 315 HOH HOH . F 3 HOH B 16 316 316 HOH HOH . F 3 HOH B 17 317 317 HOH HOH . F 3 HOH B 18 318 318 HOH HOH . F 3 HOH B 19 319 319 HOH HOH . F 3 HOH B 20 320 320 HOH HOH . F 3 HOH B 21 321 321 HOH HOH . F 3 HOH B 22 322 322 HOH HOH . F 3 HOH B 23 323 323 HOH HOH . F 3 HOH B 24 324 324 HOH HOH . F 3 HOH B 25 325 325 HOH HOH . F 3 HOH B 26 326 326 HOH HOH . F 3 HOH B 27 327 327 HOH HOH . F 3 HOH B 28 328 328 HOH HOH . F 3 HOH B 29 329 329 HOH HOH . F 3 HOH B 30 330 330 HOH HOH . F 3 HOH B 31 331 331 HOH HOH . F 3 HOH B 32 332 332 HOH HOH . F 3 HOH B 33 333 333 HOH HOH . F 3 HOH B 34 334 334 HOH HOH . F 3 HOH B 35 335 335 HOH HOH . F 3 HOH B 36 336 336 HOH HOH . F 3 HOH B 37 337 337 HOH HOH . F 3 HOH B 38 338 338 HOH HOH . F 3 HOH B 39 339 339 HOH HOH . F 3 HOH B 40 340 340 HOH HOH . F 3 HOH B 41 341 341 HOH HOH . F 3 HOH B 42 342 342 HOH HOH . F 3 HOH B 43 343 343 HOH HOH . F 3 HOH B 44 344 344 HOH HOH . F 3 HOH B 45 345 345 HOH HOH . F 3 HOH B 46 346 346 HOH HOH . F 3 HOH B 47 347 347 HOH HOH . F 3 HOH B 48 348 348 HOH HOH . F 3 HOH B 49 349 349 HOH HOH . F 3 HOH B 50 350 350 HOH HOH . F 3 HOH B 51 351 351 HOH HOH . F 3 HOH B 52 352 352 HOH HOH . F 3 HOH B 53 353 353 HOH HOH . F 3 HOH B 54 354 354 HOH HOH . F 3 HOH B 55 355 355 HOH HOH . F 3 HOH B 56 356 356 HOH HOH . F 3 HOH B 57 357 357 HOH HOH . F 3 HOH B 58 358 358 HOH HOH . F 3 HOH B 59 359 359 HOH HOH . F 3 HOH B 60 360 360 HOH HOH . F 3 HOH B 61 361 361 HOH HOH . F 3 HOH B 62 362 362 HOH HOH . F 3 HOH B 63 363 363 HOH HOH . F 3 HOH B 64 364 364 HOH HOH . F 3 HOH B 65 365 365 HOH HOH . F 3 HOH B 66 366 366 HOH HOH . F 3 HOH B 67 367 367 HOH HOH . F 3 HOH B 68 368 368 HOH HOH . F 3 HOH B 69 369 369 HOH HOH . F 3 HOH B 70 370 370 HOH HOH . F 3 HOH B 71 371 371 HOH HOH . F 3 HOH B 72 372 372 HOH HOH . F 3 HOH B 73 373 373 HOH HOH . F 3 HOH B 74 374 374 HOH HOH . F 3 HOH B 75 375 375 HOH HOH . F 3 HOH B 76 376 376 HOH HOH . F 3 HOH B 77 377 377 HOH HOH . F 3 HOH B 78 378 378 HOH HOH . F 3 HOH B 79 379 379 HOH HOH . F 3 HOH B 80 380 380 HOH HOH . F 3 HOH B 81 381 381 HOH HOH . F 3 HOH B 82 382 382 HOH HOH . F 3 HOH B 83 383 383 HOH HOH . F 3 HOH B 84 384 384 HOH HOH . F 3 HOH B 85 385 385 HOH HOH . F 3 HOH B 86 386 386 HOH HOH . F 3 HOH B 87 387 387 HOH HOH . F 3 HOH B 88 388 388 HOH HOH . F 3 HOH B 89 389 389 HOH HOH . F 3 HOH B 90 390 390 HOH HOH . F 3 HOH B 91 391 391 HOH HOH . F 3 HOH B 92 392 392 HOH HOH . F 3 HOH B 93 393 393 HOH HOH . F 3 HOH B 94 394 394 HOH HOH . F 3 HOH B 95 395 395 HOH HOH . F 3 HOH B 96 396 396 HOH HOH . F 3 HOH B 97 397 397 HOH HOH . F 3 HOH B 98 398 398 HOH HOH . F 3 HOH B 99 399 399 HOH HOH . F 3 HOH B 100 400 400 HOH HOH . F 3 HOH B 101 401 401 HOH HOH . F 3 HOH B 102 402 402 HOH HOH . F 3 HOH B 103 403 403 HOH HOH . F 3 HOH B 104 404 404 HOH HOH . F 3 HOH B 105 405 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 2 -32.945 -6.512 -8.152 1 15.58 ? P AMP 200 B 1 HETATM 2 O O1P AMP . . . D 2 -34.113 -6.166 -9.068 1 15.29 ? O1P AMP 200 B 1 HETATM 3 O O2P AMP . . . D 2 -32.994 -7.956 -7.729 1 14.39 ? O2P AMP 200 B 1 HETATM 4 O O3P AMP . . . D 2 -31.584 -6.092 -8.68 1 16.78 ? O3P AMP 200 B 1 HETATM 5 O O5' AMP . . . D 2 -33.197 -5.597 -6.885 1 15.87 ? O5' AMP 200 B 1 HETATM 6 C C5' AMP . . . D 2 -32.753 -6.04 -5.622 1 21.79 ? C5' AMP 200 B 1 HETATM 7 C C4' AMP . . . D 2 -32.135 -4.854 -4.912 1 21.03 ? C4' AMP 200 B 1 HETATM 8 O O4' AMP . . . D 2 -33.086 -3.791 -4.783 1 21.52 ? O4' AMP 200 B 1 HETATM 9 C C3' AMP . . . D 2 -31.785 -5.312 -3.524 1 24.29 ? C3' AMP 200 B 1 HETATM 10 O O3' AMP . . . D 2 -30.675 -4.534 -3.078 1 26.73 ? O3' AMP 200 B 1 HETATM 11 C C2' AMP . . . D 2 -33.047 -5.016 -2.734 1 19.9 ? C2' AMP 200 B 1 HETATM 12 O O2' AMP . . . D 2 -32.689 -4.519 -1.448 1 22.58 ? O2' AMP 200 B 1 HETATM 13 C C1' AMP . . . D 2 -33.749 -3.898 -3.527 1 18.34 ? C1' AMP 200 B 1 HETATM 14 N N9 AMP . . . D 2 -35.202 -4.128 -3.769 1 15.26 ? N9 AMP 200 B 1 HETATM 15 C C8 AMP . . . D 2 -35.775 -4.367 -4.964 1 16.93 ? C8 AMP 200 B 1 HETATM 16 N N7 AMP . . . D 2 -37.122 -4.485 -4.844 1 18.85 ? N7 AMP 200 B 1 HETATM 17 C C5 AMP . . . D 2 -37.371 -4.288 -3.546 1 15.23 ? C5 AMP 200 B 1 HETATM 18 C C6 AMP . . . D 2 -38.622 -4.27 -2.836 1 14.46 ? C6 AMP 200 B 1 HETATM 19 N N6 AMP . . . D 2 -39.837 -4.481 -3.38 1 15.06 ? N6 AMP 200 B 1 HETATM 20 N N1 AMP . . . D 2 -38.528 -4.007 -1.415 1 14.95 ? N1 AMP 200 B 1 HETATM 21 C C2 AMP . . . D 2 -37.336 -3.77 -0.831 1 14.97 ? C2 AMP 200 B 1 HETATM 22 N N3 AMP . . . D 2 -36.178 -3.781 -1.513 1 14.3 ? N3 AMP 200 B 1 HETATM 23 C C4 AMP . . . D 2 -36.183 -4.014 -2.857 1 16.76 ? C4 AMP 200 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #