data_6FCR # _model_server_result.job_id TlaZtbjpTzZiupGeyH1hPw _model_server_result.datetime_utc '2024-11-18 02:26:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6FCR # _exptl.entry_id 6FCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FCR _cell.length_a 166.703 _cell.length_b 166.703 _cell.length_c 55.378 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 AMU NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 NAG AMU C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 B 1 NAG B 1 208 3 n D AMU 2 B 2 AMU B 1 208 3 n D NAG 3 B 3 NAG B 1 208 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 130 1_555 A SG CYS 134 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 B C ALA 1 F ALA 1 1_555 B N DGL 2 F DGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 B N ALA 1 F ALA 1 1_555 D C10 AMU . B AMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale3 B CD DGL 2 F DGL 2 1_555 B N API 3 F API 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale4 B C API 3 F API 3 1_555 B N DAL 4 F DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale5 C C ALA 1 G ALA 1 1_555 C N DGL 2 G DGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C N ALA 1 G ALA 1 1_555 G C AH0 . G AH0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 C CD DGL 2 G DGL 2 1_555 C N API 3 G API 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 C C API 3 G API 3 1_555 C N DAL 4 G DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale9 G O4 AH0 . G AH0 101 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale10 D O4 NAG . B NAG 1 1_555 D C1 AMU . B AMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale11 D O4 AMU . B AMU 2 1_555 D C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 267 n n C1 C2 GOL sing 268 n n C1 H11 GOL sing 269 n n C1 H12 GOL sing 270 n n O1 HO1 GOL sing 271 n n C2 O2 GOL sing 272 n n C2 C3 GOL sing 273 n n C2 H2 GOL sing 274 n n O2 HO2 GOL sing 275 n n C3 O3 GOL sing 276 n n C3 H31 GOL sing 277 n n C3 H32 GOL sing 278 n n O3 HO3 GOL sing 279 n n # _atom_sites.entry_id 6FCR _atom_sites.fract_transf_matrix[1][1] 0.005999 _atom_sites.fract_transf_matrix[1][2] 0.003463 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 701 1 GOL GOL . F 5 ACT A 1 702 1 ACT ACT . G 6 AH0 G 1 101 1 AH0 208 . H 7 HOH A 1 801 118 HOH HOH . H 7 HOH A 2 802 125 HOH HOH . H 7 HOH A 3 803 158 HOH HOH . H 7 HOH A 4 804 126 HOH HOH . H 7 HOH A 5 805 77 HOH HOH . H 7 HOH A 6 806 131 HOH HOH . H 7 HOH A 7 807 62 HOH HOH . H 7 HOH A 8 808 1 HOH HOH . H 7 HOH A 9 809 121 HOH HOH . H 7 HOH A 10 810 141 HOH HOH . H 7 HOH A 11 811 93 HOH HOH . H 7 HOH A 12 812 100 HOH HOH . H 7 HOH A 13 813 3 HOH HOH . H 7 HOH A 14 814 140 HOH HOH . H 7 HOH A 15 815 25 HOH HOH . H 7 HOH A 16 816 49 HOH HOH . H 7 HOH A 17 817 82 HOH HOH . H 7 HOH A 18 818 33 HOH HOH . H 7 HOH A 19 819 147 HOH HOH . H 7 HOH A 20 820 63 HOH HOH . H 7 HOH A 21 821 65 HOH HOH . H 7 HOH A 22 822 64 HOH HOH . H 7 HOH A 23 823 156 HOH HOH . H 7 HOH A 24 824 42 HOH HOH . H 7 HOH A 25 825 31 HOH HOH . H 7 HOH A 26 826 43 HOH HOH . H 7 HOH A 27 827 88 HOH HOH . H 7 HOH A 28 828 135 HOH HOH . H 7 HOH A 29 829 83 HOH HOH . H 7 HOH A 30 830 99 HOH HOH . H 7 HOH A 31 831 112 HOH HOH . H 7 HOH A 32 832 109 HOH HOH . H 7 HOH A 33 833 79 HOH HOH . H 7 HOH A 34 834 134 HOH HOH . H 7 HOH A 35 835 19 HOH HOH . H 7 HOH A 36 836 145 HOH HOH . H 7 HOH A 37 837 119 HOH HOH . H 7 HOH A 38 838 51 HOH HOH . H 7 HOH A 39 839 35 HOH HOH . H 7 HOH A 40 840 14 HOH HOH . H 7 HOH A 41 841 157 HOH HOH . H 7 HOH A 42 842 143 HOH HOH . H 7 HOH A 43 843 91 HOH HOH . H 7 HOH A 44 844 138 HOH HOH . H 7 HOH A 45 845 78 HOH HOH . H 7 HOH A 46 846 38 HOH HOH . H 7 HOH A 47 847 44 HOH HOH . H 7 HOH A 48 848 152 HOH HOH . H 7 HOH A 49 849 8 HOH HOH . H 7 HOH A 50 850 74 HOH HOH . H 7 HOH A 51 851 161 HOH HOH . H 7 HOH A 52 852 148 HOH HOH . H 7 HOH A 53 853 105 HOH HOH . H 7 HOH A 54 854 130 HOH HOH . H 7 HOH A 55 855 48 HOH HOH . H 7 HOH A 56 856 45 HOH HOH . H 7 HOH A 57 857 67 HOH HOH . H 7 HOH A 58 858 68 HOH HOH . H 7 HOH A 59 859 75 HOH HOH . H 7 HOH A 60 860 60 HOH HOH . H 7 HOH A 61 861 39 HOH HOH . H 7 HOH A 62 862 159 HOH HOH . H 7 HOH A 63 863 66 HOH HOH . H 7 HOH A 64 864 76 HOH HOH . H 7 HOH A 65 865 144 HOH HOH . H 7 HOH A 66 866 154 HOH HOH . H 7 HOH A 67 867 30 HOH HOH . H 7 HOH A 68 868 162 HOH HOH . H 7 HOH A 69 869 23 HOH HOH . H 7 HOH A 70 870 94 HOH HOH . H 7 HOH A 71 871 117 HOH HOH . H 7 HOH A 72 872 142 HOH HOH . H 7 HOH A 73 873 110 HOH HOH . H 7 HOH A 74 874 139 HOH HOH . H 7 HOH A 75 875 70 HOH HOH . H 7 HOH A 76 876 20 HOH HOH . H 7 HOH A 77 877 114 HOH HOH . H 7 HOH A 78 878 59 HOH HOH . H 7 HOH A 79 879 69 HOH HOH . H 7 HOH A 80 880 107 HOH HOH . H 7 HOH A 81 881 136 HOH HOH . H 7 HOH A 82 882 151 HOH HOH . H 7 HOH A 83 883 21 HOH HOH . H 7 HOH A 84 884 111 HOH HOH . H 7 HOH A 85 885 149 HOH HOH . H 7 HOH A 86 886 133 HOH HOH . H 7 HOH A 87 887 84 HOH HOH . H 7 HOH A 88 888 106 HOH HOH . H 7 HOH A 89 889 34 HOH HOH . H 7 HOH A 90 890 36 HOH HOH . H 7 HOH A 91 891 41 HOH HOH . H 7 HOH A 92 892 6 HOH HOH . H 7 HOH A 93 893 28 HOH HOH . H 7 HOH A 94 894 132 HOH HOH . H 7 HOH A 95 895 37 HOH HOH . H 7 HOH A 96 896 89 HOH HOH . H 7 HOH A 97 897 123 HOH HOH . H 7 HOH A 98 898 108 HOH HOH . H 7 HOH A 99 899 127 HOH HOH . H 7 HOH A 100 900 96 HOH HOH . H 7 HOH A 101 901 129 HOH HOH . H 7 HOH A 102 902 95 HOH HOH . H 7 HOH A 103 903 47 HOH HOH . H 7 HOH A 104 904 72 HOH HOH . H 7 HOH A 105 905 104 HOH HOH . H 7 HOH A 106 906 86 HOH HOH . H 7 HOH A 107 907 7 HOH HOH . H 7 HOH A 108 908 137 HOH HOH . H 7 HOH A 109 909 150 HOH HOH . H 7 HOH A 110 910 92 HOH HOH . H 7 HOH A 111 911 128 HOH HOH . H 7 HOH A 112 912 101 HOH HOH . H 7 HOH A 113 913 146 HOH HOH . H 7 HOH A 114 914 122 HOH HOH . H 7 HOH A 115 915 124 HOH HOH . H 7 HOH A 116 916 29 HOH HOH . H 7 HOH A 117 917 155 HOH HOH . H 7 HOH A 118 918 113 HOH HOH . H 7 HOH A 119 919 90 HOH HOH . H 7 HOH A 120 920 160 HOH HOH . I 7 HOH F 1 201 98 HOH HOH . I 7 HOH F 2 202 58 HOH HOH . I 7 HOH F 3 203 102 HOH HOH . I 7 HOH F 4 204 57 HOH HOH . J 7 HOH G 1 201 163 HOH HOH . J 7 HOH G 2 202 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 69.137 -47.222 -12.584 1 65.41 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . E 4 70.152 -46.488 -11.878 1 60.95 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . E 4 69.278 -47.078 -14.107 1 66.63 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . E 4 69.55 -45.711 -14.456 1 70.62 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . E 4 70.384 -47.998 -14.64 1 65.8 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . E 4 71.036 -47.456 -15.798 1 61.65 ? O3 GOL 701 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #