data_6FCU # _model_server_result.job_id yk5Pfi_4yAQyvPhe_czogA _model_server_result.datetime_utc '2024-11-16 23:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":712}' # _entry.id 6FCU # _exptl.entry_id 6FCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FCU _cell.length_a 164.293 _cell.length_b 164.293 _cell.length_c 55.954 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG MAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 AMU NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG AMU C1 O1 . O4 HO4 . sing 4 ? 2 5 4 AMU NAG C1 O1 . O4 HO4 . sing 5 ? 2 6 5 NAG AMU C1 O1 . O4 HO4 . sing 6 ? 2 7 6 NM6 NAG C1 O1 . O4 HO4 . sing 7 ? 2 8 7 NAG NM6 C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAG 1 B 1 MAG B 1 OC3 2 n B NAG 2 B 2 NAG B 1 OC3 2 n B AMU 3 B 3 AMU B 1 OC3 2 n B NAG 4 B 4 NAG B 1 OC3 2 n B AMU 5 B 5 AMU B 1 OC3 2 n B NAG 6 B 6 NAG B 1 OC3 2 n B NM6 7 B 7 NM6 B 1 OC3 2 n B NAG 8 B 8 NAG B 1 OC3 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 130 1_555 A SG CYS 134 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E C ALA . A ALA 711 1_555 F N DGL . A DGL 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale2 E N ALA . A ALA 711 1_555 B C10 AMU . B AMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 B O4 MAG . B MAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 AMU . B AMU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? covale ? covale5 B O4 AMU . B AMU 3 1_555 B C1 NAG . B NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale6 B O4 NAG . B NAG 4 1_555 B C1 AMU . B AMU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 B O4 AMU . B AMU 5 1_555 B C1 NAG . B NAG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale8 B O4 NAG . B NAG 6 1_555 B C1 NM6 . B NM6 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale9 B O4 NM6 . B NM6 7 1_555 B C1 NAG . B NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id DGL _chem_comp.mon_nstd_flag . _chem_comp.name 'D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DGL sing 128 n n N H DGL sing 129 n n N H2 DGL sing 130 n n CA C DGL sing 131 n n CA CB DGL sing 132 n n CA HA DGL sing 133 n n C O DGL doub 134 n n C OXT DGL sing 135 n n CB CG DGL sing 136 n n CB HB2 DGL sing 137 n n CB HB3 DGL sing 138 n n CG CD DGL sing 139 n n CG HG2 DGL sing 140 n n CG HG3 DGL sing 141 n n CD OE1 DGL doub 142 n n CD OE2 DGL sing 143 n n OE2 HE2 DGL sing 144 n n OXT HXT DGL sing 145 n n # _atom_sites.entry_id 6FCU _atom_sites.fract_transf_matrix[1][1] 0.006087 _atom_sites.fract_transf_matrix[1][2] 0.003514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 701 1 ACT ACT . D 3 ACT A 1 702 2 ACT ACT . E 4 ALA A 1 711 1 ALA OC3 . F 5 DGL A 1 712 1 DGL OC3 . G 6 HOH A 1 801 23 HOH HOH . G 6 HOH A 2 802 60 HOH HOH . G 6 HOH A 3 803 3 HOH HOH . G 6 HOH A 4 804 45 HOH HOH . G 6 HOH A 5 805 71 HOH HOH . G 6 HOH A 6 806 55 HOH HOH . G 6 HOH A 7 807 22 HOH HOH . G 6 HOH A 8 808 74 HOH HOH . G 6 HOH A 9 809 34 HOH HOH . G 6 HOH A 10 810 32 HOH HOH . G 6 HOH A 11 811 43 HOH HOH . G 6 HOH A 12 812 54 HOH HOH . G 6 HOH A 13 813 47 HOH HOH . G 6 HOH A 14 814 61 HOH HOH . G 6 HOH A 15 815 37 HOH HOH . G 6 HOH A 16 816 59 HOH HOH . G 6 HOH A 17 817 58 HOH HOH . G 6 HOH A 18 818 41 HOH HOH . G 6 HOH A 19 819 53 HOH HOH . G 6 HOH A 20 820 38 HOH HOH . G 6 HOH A 21 821 77 HOH HOH . G 6 HOH A 22 822 68 HOH HOH . G 6 HOH A 23 823 33 HOH HOH . G 6 HOH A 24 824 49 HOH HOH . G 6 HOH A 25 825 70 HOH HOH . G 6 HOH A 26 826 31 HOH HOH . G 6 HOH A 27 827 50 HOH HOH . G 6 HOH A 28 828 57 HOH HOH . G 6 HOH A 29 829 69 HOH HOH . G 6 HOH A 30 830 30 HOH HOH . G 6 HOH A 31 831 40 HOH HOH . G 6 HOH A 32 832 28 HOH HOH . G 6 HOH A 33 833 46 HOH HOH . G 6 HOH A 34 834 62 HOH HOH . G 6 HOH A 35 835 42 HOH HOH . G 6 HOH A 36 836 65 HOH HOH . G 6 HOH A 37 837 35 HOH HOH . G 6 HOH A 38 838 25 HOH HOH . G 6 HOH A 39 839 36 HOH HOH . G 6 HOH A 40 840 51 HOH HOH . G 6 HOH A 41 841 48 HOH HOH . G 6 HOH A 42 842 44 HOH HOH . G 6 HOH A 43 843 67 HOH HOH . G 6 HOH A 44 844 72 HOH HOH . G 6 HOH A 45 845 56 HOH HOH . G 6 HOH A 46 846 66 HOH HOH . G 6 HOH A 47 847 24 HOH HOH . G 6 HOH A 48 848 27 HOH HOH . G 6 HOH A 49 849 39 HOH HOH . G 6 HOH A 50 850 29 HOH HOH . G 6 HOH A 51 851 26 HOH HOH . G 6 HOH A 52 852 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DGL . . . F 5 72.042 -18.388 -16.751 1 155.1 ? N DGL 712 A 1 HETATM 2 C CA DGL . . . F 5 73.392 -18.706 -17.274 1 152.94 ? CA DGL 712 A 1 HETATM 3 C C DGL . . . F 5 73.483 -18.326 -18.777 1 151.05 ? C DGL 712 A 1 HETATM 4 O O DGL . . . F 5 73.632 -19.189 -19.611 1 145.55 ? O DGL 712 A 1 HETATM 5 C CB DGL . . . F 5 74.485 -17.971 -16.448 1 148.9 ? CB DGL 712 A 1 HETATM 6 C CG DGL . . . F 5 75.582 -18.927 -15.936 1 140.9 ? CG DGL 712 A 1 HETATM 7 C CD DGL . . . F 5 76.71 -18.067 -15.333 1 133 ? CD DGL 712 A 1 HETATM 8 O OE1 DGL . . . F 5 77.704 -18.576 -14.877 1 124.09 ? OE1 DGL 712 A 1 HETATM 9 O OXT DGL . . . F 5 73.399 -16.958 -19.197 1 141.41 ? OXT DGL 712 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #