data_6FCX # _model_server_result.job_id SB1Gs2ACvluwROWDzmpjww _model_server_result.datetime_utc '2024-11-22 08:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 6FCX # _exptl.entry_id 6FCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FCX _cell.length_a 97.337 _cell.length_b 127.942 _cell.length_c 147.015 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CB ALA 139 B ALA 175 1_555 F O2A FAD . B FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 B CA ASP 174 B ASP 210 1_555 F O2B FAD . B FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale3 B OE1 GLN 449 B GLN 485 1_555 G N SAH . B SAH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FCX _atom_sites.fract_transf_matrix[1][1] 0.010274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 701 1 FAD FAD . D 3 SAH A 1 702 1 SAH SAH . E 4 CIT A 1 703 1 CIT CIT . F 2 FAD B 1 701 2 FAD FAD . G 3 SAH B 1 702 1 SAH SAH . H 4 CIT B 1 703 2 CIT CIT . I 5 HOH A 1 801 43 HOH HOH . I 5 HOH A 2 802 48 HOH HOH . I 5 HOH A 3 803 65 HOH HOH . I 5 HOH A 4 804 22 HOH HOH . I 5 HOH A 5 805 55 HOH HOH . I 5 HOH A 6 806 38 HOH HOH . I 5 HOH A 7 807 35 HOH HOH . I 5 HOH A 8 808 47 HOH HOH . I 5 HOH A 9 809 7 HOH HOH . I 5 HOH A 10 810 30 HOH HOH . I 5 HOH A 11 811 33 HOH HOH . I 5 HOH A 12 812 40 HOH HOH . I 5 HOH A 13 813 31 HOH HOH . I 5 HOH A 14 814 66 HOH HOH . I 5 HOH A 15 815 1 HOH HOH . I 5 HOH A 16 816 8 HOH HOH . I 5 HOH A 17 817 62 HOH HOH . I 5 HOH A 18 818 59 HOH HOH . I 5 HOH A 19 819 70 HOH HOH . I 5 HOH A 20 820 37 HOH HOH . I 5 HOH A 21 821 5 HOH HOH . I 5 HOH A 22 822 49 HOH HOH . I 5 HOH A 23 823 4 HOH HOH . I 5 HOH A 24 824 44 HOH HOH . I 5 HOH A 25 825 36 HOH HOH . I 5 HOH A 26 826 28 HOH HOH . I 5 HOH A 27 827 25 HOH HOH . I 5 HOH A 28 828 20 HOH HOH . I 5 HOH A 29 829 14 HOH HOH . I 5 HOH A 30 830 10 HOH HOH . I 5 HOH A 31 831 32 HOH HOH . I 5 HOH A 32 832 39 HOH HOH . I 5 HOH A 33 833 61 HOH HOH . I 5 HOH A 34 834 54 HOH HOH . I 5 HOH A 35 835 41 HOH HOH . I 5 HOH A 36 836 27 HOH HOH . I 5 HOH A 37 837 23 HOH HOH . I 5 HOH A 38 838 19 HOH HOH . I 5 HOH A 39 839 63 HOH HOH . I 5 HOH A 40 840 13 HOH HOH . I 5 HOH A 41 841 17 HOH HOH . I 5 HOH A 42 842 67 HOH HOH . I 5 HOH A 43 843 52 HOH HOH . I 5 HOH A 44 844 57 HOH HOH . I 5 HOH A 45 845 58 HOH HOH . I 5 HOH A 46 846 26 HOH HOH . I 5 HOH A 47 847 53 HOH HOH . I 5 HOH A 48 848 64 HOH HOH . J 5 HOH B 1 801 24 HOH HOH . J 5 HOH B 2 802 3 HOH HOH . J 5 HOH B 3 803 46 HOH HOH . J 5 HOH B 4 804 12 HOH HOH . J 5 HOH B 5 805 9 HOH HOH . J 5 HOH B 6 806 56 HOH HOH . J 5 HOH B 7 807 2 HOH HOH . J 5 HOH B 8 808 42 HOH HOH . J 5 HOH B 9 809 45 HOH HOH . J 5 HOH B 10 810 69 HOH HOH . J 5 HOH B 11 811 15 HOH HOH . J 5 HOH B 12 812 16 HOH HOH . J 5 HOH B 13 813 21 HOH HOH . J 5 HOH B 14 814 68 HOH HOH . J 5 HOH B 15 815 18 HOH HOH . J 5 HOH B 16 816 50 HOH HOH . J 5 HOH B 17 817 11 HOH HOH . J 5 HOH B 18 818 60 HOH HOH . J 5 HOH B 19 819 34 HOH HOH . J 5 HOH B 20 820 6 HOH HOH . J 5 HOH B 21 821 71 HOH HOH . J 5 HOH B 22 822 51 HOH HOH . J 5 HOH B 23 823 29 HOH HOH . J 5 HOH B 24 824 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 -32.78 19.167 -8.289 1 52.12 ? N SAH 702 A 1 HETATM 2 C CA SAH . . . D 3 -31.375 18.76 -8.355 1 54.69 ? CA SAH 702 A 1 HETATM 3 C CB SAH . . . D 3 -30.868 18.313 -6.99 1 55.27 ? CB SAH 702 A 1 HETATM 4 C CG SAH . . . D 3 -30.804 19.453 -5.984 1 59.18 ? CG SAH 702 A 1 HETATM 5 S SD SAH . . . D 3 -29.703 20.818 -6.513 1 57.82 ? SD SAH 702 A 1 HETATM 6 C C SAH . . . D 3 -31.034 17.643 -9.321 1 58.87 ? C SAH 702 A 1 HETATM 7 O O SAH . . . D 3 -31.775 17.195 -10.182 1 59.28 ? O SAH 702 A 1 HETATM 8 O OXT SAH . . . D 3 -29.926 17.143 -9.202 1 61 ? OXT SAH 702 A 1 HETATM 9 C C5' SAH . . . D 3 -29.436 21.394 -4.827 1 54.27 ? C5' SAH 702 A 1 HETATM 10 C C4' SAH . . . D 3 -30.687 22.07 -4.28 1 53.43 ? C4' SAH 702 A 1 HETATM 11 O O4' SAH . . . D 3 -30.602 22.319 -2.897 1 56.78 ? O4' SAH 702 A 1 HETATM 12 C C3' SAH . . . D 3 -31.017 23.384 -4.965 1 54.12 ? C3' SAH 702 A 1 HETATM 13 O O3' SAH . . . D 3 -32.374 23.275 -5.288 1 53.82 ? O3' SAH 702 A 1 HETATM 14 C C2' SAH . . . D 3 -30.798 24.424 -3.882 1 56.42 ? C2' SAH 702 A 1 HETATM 15 O O2' SAH . . . D 3 -31.546 25.629 -4.045 1 55.55 ? O2' SAH 702 A 1 HETATM 16 C C1' SAH . . . D 3 -31.154 23.62 -2.632 1 55.42 ? C1' SAH 702 A 1 HETATM 17 N N9 SAH . . . D 3 -30.626 24.23 -1.404 1 50.32 ? N9 SAH 702 A 1 HETATM 18 C C8 SAH . . . D 3 -29.481 24.975 -1.25 1 50.18 ? C8 SAH 702 A 1 HETATM 19 N N7 SAH . . . D 3 -29.328 25.34 0.053 1 49.85 ? N7 SAH 702 A 1 HETATM 20 C C5 SAH . . . D 3 -30.379 24.818 0.716 1 50.45 ? C5 SAH 702 A 1 HETATM 21 C C6 SAH . . . D 3 -30.72 24.861 2.044 1 52.04 ? C6 SAH 702 A 1 HETATM 22 N N6 SAH . . . D 3 -29.906 25.55 2.864 1 51.03 ? N6 SAH 702 A 1 HETATM 23 N N1 SAH . . . D 3 -31.88 24.199 2.48 1 52.43 ? N1 SAH 702 A 1 HETATM 24 C C2 SAH . . . D 3 -32.687 23.531 1.577 1 48.99 ? C2 SAH 702 A 1 HETATM 25 N N3 SAH . . . D 3 -32.322 23.506 0.244 1 47.36 ? N3 SAH 702 A 1 HETATM 26 C C4 SAH . . . D 3 -31.193 24.114 -0.168 1 48.02 ? C4 SAH 702 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #