data_6FCY
#
_model_server_result.job_id            w08QDGQUuUmAxTkBjgpIqw 
_model_server_result.datetime_utc      '2024-11-09 23:17:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6FCY 
#
_exptl.entry_id    6FCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.07 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.61 
_cell.angle_gamma         90 
_cell.entry_id            6FCY 
_cell.length_a            70.58 
_cell.length_b            34.04 
_cell.length_c            93.868 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -70.58 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O1A PRP . A PRP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 B O3B PRP . A PRP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc3 C O2B ADP . A ADP 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc4 C O2A ADP . A ADP 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
#
_chem_comp.formula           'C5 H13 O14 P3' 
_chem_comp.formula_weight    390.07 
_chem_comp.id                PRP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID;1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose;1-O-pyrophosphono-5-O-phosphono-D-ribose;1-O-pyrophosphono-5-O-phosphono-ribose' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PRP sing 321 n n 
C1 O1 PRP sing 322 n n 
C1 O4 PRP sing 323 n n 
C1 H1 PRP sing 324 n n 
C2 C3 PRP sing 325 n n 
C2 O2 PRP sing 326 n n 
C2 H2 PRP sing 327 n n 
C3 C4 PRP sing 328 n n 
C3 O3 PRP sing 329 n n 
C3 H3 PRP sing 330 n n 
C4 C5 PRP sing 331 n n 
C4 O4 PRP sing 332 n n 
C4 H4 PRP sing 333 n n 
C5 O5 PRP sing 334 n n 
C5 H51 PRP sing 335 n n 
C5 H52 PRP sing 336 n n 
O1 PA PRP sing 337 n n 
O2 HO2 PRP sing 338 n n 
O3 HO3 PRP sing 339 n n 
O5 P PRP sing 340 n n 
P O1P PRP doub 341 n n 
P O2P PRP sing 342 n n 
P O3P PRP sing 343 n n 
O2P HOP2 PRP sing 344 n n 
O3P HOP3 PRP sing 345 n n 
PA O1A PRP doub 346 n n 
PA O2A PRP sing 347 n n 
PA O3A PRP sing 348 n n 
O2A HOA2 PRP sing 349 n n 
O3A PB PRP sing 350 n n 
PB O1B PRP doub 351 n n 
PB O2B PRP sing 352 n n 
PB O3B PRP sing 353 n n 
O2B HOB2 PRP sing 354 n n 
O3B HOB3 PRP sing 355 n n 
#
_pdbx_chem_comp_identifier.comp_id            PRP 
_pdbx_chem_comp_identifier.identifier         a-D-Ribf1PO35PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6FCY 
_atom_sites.fract_transf_matrix[1][1]    0.014168 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000397 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029377 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PRP A 1 301 400 PRP PRP . 
C 3 ADP A 1 302 500 ADP ADP . 
D 4 MG A 1 303 1 MG MG . 
E 5 HOH A 1 401 96 HOH HOH . 
E 5 HOH A 2 402 93 HOH HOH . 
E 5 HOH A 3 403 95 HOH HOH . 
E 5 HOH A 4 404 88 HOH HOH . 
E 5 HOH A 5 405 85 HOH HOH . 
E 5 HOH A 6 406 41 HOH HOH . 
E 5 HOH A 7 407 32 HOH HOH . 
E 5 HOH A 8 408 90 HOH HOH . 
E 5 HOH A 9 409 110 HOH HOH . 
E 5 HOH A 10 410 42 HOH HOH . 
E 5 HOH A 11 411 44 HOH HOH . 
E 5 HOH A 12 412 91 HOH HOH . 
E 5 HOH A 13 413 66 HOH HOH . 
E 5 HOH A 14 414 35 HOH HOH . 
E 5 HOH A 15 415 81 HOH HOH . 
E 5 HOH A 16 416 114 HOH HOH . 
E 5 HOH A 17 417 98 HOH HOH . 
E 5 HOH A 18 418 24 HOH HOH . 
E 5 HOH A 19 419 62 HOH HOH . 
E 5 HOH A 20 420 79 HOH HOH . 
E 5 HOH A 21 421 103 HOH HOH . 
E 5 HOH A 22 422 1 HOH HOH . 
E 5 HOH A 23 423 94 HOH HOH . 
E 5 HOH A 24 424 6 HOH HOH . 
E 5 HOH A 25 425 22 HOH HOH . 
E 5 HOH A 26 426 74 HOH HOH . 
E 5 HOH A 27 427 113 HOH HOH . 
E 5 HOH A 28 428 50 HOH HOH . 
E 5 HOH A 29 429 57 HOH HOH . 
E 5 HOH A 30 430 92 HOH HOH . 
E 5 HOH A 31 431 38 HOH HOH . 
E 5 HOH A 32 432 55 HOH HOH . 
E 5 HOH A 33 433 54 HOH HOH . 
E 5 HOH A 34 434 2 HOH HOH . 
E 5 HOH A 35 435 73 HOH HOH . 
E 5 HOH A 36 436 86 HOH HOH . 
E 5 HOH A 37 437 65 HOH HOH . 
E 5 HOH A 38 438 12 HOH HOH . 
E 5 HOH A 39 439 16 HOH HOH . 
E 5 HOH A 40 440 13 HOH HOH . 
E 5 HOH A 41 441 109 HOH HOH . 
E 5 HOH A 42 442 100 HOH HOH . 
E 5 HOH A 43 443 105 HOH HOH . 
E 5 HOH A 44 444 21 HOH HOH . 
E 5 HOH A 45 445 104 HOH HOH . 
E 5 HOH A 46 446 17 HOH HOH . 
E 5 HOH A 47 447 19 HOH HOH . 
E 5 HOH A 48 448 43 HOH HOH . 
E 5 HOH A 49 449 108 HOH HOH . 
E 5 HOH A 50 450 10 HOH HOH . 
E 5 HOH A 51 451 28 HOH HOH . 
E 5 HOH A 52 452 75 HOH HOH . 
E 5 HOH A 53 453 99 HOH HOH . 
E 5 HOH A 54 454 63 HOH HOH . 
E 5 HOH A 55 455 107 HOH HOH . 
E 5 HOH A 56 456 11 HOH HOH . 
E 5 HOH A 57 457 72 HOH HOH . 
E 5 HOH A 58 458 102 HOH HOH . 
E 5 HOH A 59 459 34 HOH HOH . 
E 5 HOH A 60 460 7 HOH HOH . 
E 5 HOH A 61 461 9 HOH HOH . 
E 5 HOH A 62 462 3 HOH HOH . 
E 5 HOH A 63 463 89 HOH HOH . 
E 5 HOH A 64 464 61 HOH HOH . 
E 5 HOH A 65 465 84 HOH HOH . 
E 5 HOH A 66 466 30 HOH HOH . 
E 5 HOH A 67 467 101 HOH HOH . 
E 5 HOH A 68 468 51 HOH HOH . 
E 5 HOH A 69 469 46 HOH HOH . 
E 5 HOH A 70 470 78 HOH HOH . 
E 5 HOH A 71 471 56 HOH HOH . 
E 5 HOH A 72 472 4 HOH HOH . 
E 5 HOH A 73 473 37 HOH HOH . 
E 5 HOH A 74 474 33 HOH HOH . 
E 5 HOH A 75 475 69 HOH HOH . 
E 5 HOH A 76 476 60 HOH HOH . 
E 5 HOH A 77 477 25 HOH HOH . 
E 5 HOH A 78 478 112 HOH HOH . 
E 5 HOH A 79 479 26 HOH HOH . 
E 5 HOH A 80 480 53 HOH HOH . 
E 5 HOH A 81 481 49 HOH HOH . 
E 5 HOH A 82 482 58 HOH HOH . 
E 5 HOH A 83 483 70 HOH HOH . 
E 5 HOH A 84 484 83 HOH HOH . 
E 5 HOH A 85 485 18 HOH HOH . 
E 5 HOH A 86 486 15 HOH HOH . 
E 5 HOH A 87 487 23 HOH HOH . 
E 5 HOH A 88 488 29 HOH HOH . 
E 5 HOH A 89 489 67 HOH HOH . 
E 5 HOH A 90 490 111 HOH HOH . 
E 5 HOH A 91 491 77 HOH HOH . 
E 5 HOH A 92 492 87 HOH HOH . 
E 5 HOH A 93 493 48 HOH HOH . 
E 5 HOH A 94 494 20 HOH HOH . 
E 5 HOH A 95 495 31 HOH HOH . 
E 5 HOH A 96 496 47 HOH HOH . 
E 5 HOH A 97 497 14 HOH HOH . 
E 5 HOH A 98 498 36 HOH HOH . 
E 5 HOH A 99 499 27 HOH HOH . 
E 5 HOH A 100 500 80 HOH HOH . 
E 5 HOH A 101 501 59 HOH HOH . 
E 5 HOH A 102 502 8 HOH HOH . 
E 5 HOH A 103 503 64 HOH HOH . 
E 5 HOH A 104 504 5 HOH HOH . 
E 5 HOH A 105 505 71 HOH HOH . 
E 5 HOH A 106 506 45 HOH HOH . 
E 5 HOH A 107 507 39 HOH HOH . 
E 5 HOH A 108 508 82 HOH HOH . 
E 5 HOH A 109 509 97 HOH HOH . 
E 5 HOH A 110 510 106 HOH HOH . 
E 5 HOH A 111 511 40 HOH HOH . 
E 5 HOH A 112 512 52 HOH HOH . 
E 5 HOH A 113 513 76 HOH HOH . 
E 5 HOH A 114 514 115 HOH HOH . 
E 5 HOH A 115 515 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PRP . . . B 2 -29.412 -10.308 10.144 1 47.85 ? C1 PRP 301 A 1 
HETATM 2 C C2 PRP . . . B 2 -30.063 -11.624 10.528 1 43.07 ? C2 PRP 301 A 1 
HETATM 3 C C3 PRP . . . B 2 -30.597 -11.347 11.922 1 40.3 ? C3 PRP 301 A 1 
HETATM 4 C C4 PRP . . . B 2 -29.821 -10.127 12.399 1 38.88 ? C4 PRP 301 A 1 
HETATM 5 C C5 PRP . . . B 2 -29.052 -10.406 13.664 1 35.04 ? C5 PRP 301 A 1 
HETATM 6 O O1 PRP . . . B 2 -30.389 -9.395 9.654 1 58.4 ? O1 PRP 301 A 1 
HETATM 7 O O2 PRP . . . B 2 -31.077 -12.014 9.601 1 42.08 ? O2 PRP 301 A 1 
HETATM 8 O O3 PRP . . . B 2 -31.991 -11.046 11.91 1 38.27 ? O3 PRP 301 A 1 
HETATM 9 O O4 PRP . . . B 2 -28.902 -9.768 11.357 1 43.6 ? O4 PRP 301 A 1 
HETATM 10 O O5 PRP . . . B 2 -28.211 -9.287 13.901 1 31.61 ? O5 PRP 301 A 1 
HETATM 11 P P PRP . . . B 2 -28.219 -8.608 15.344 1 30.24 ? P PRP 301 A 1 
HETATM 12 O O1P PRP . . . B 2 -27.076 -7.614 15.336 1 33.18 ? O1P PRP 301 A 1 
HETATM 13 O O2P PRP . . . B 2 -27.932 -9.779 16.26 1 29.48 ? O2P PRP 301 A 1 
HETATM 14 O O3P PRP . . . B 2 -29.605 -8.032 15.48 1 28.96 ? O3P PRP 301 A 1 
HETATM 15 P PA PRP . . . B 2 -30.079 -8.316 8.499 1 65.58 ? PA PRP 301 A 1 
HETATM 16 O O1A PRP . . . B 2 -29.305 -9.006 7.394 1 64.37 ? O1A PRP 301 A 1 
HETATM 17 O O2A PRP . . . B 2 -29.508 -7.081 9.164 1 61.49 ? O2A PRP 301 A 1 
HETATM 18 O O3A PRP . . . B 2 -31.578 -7.997 7.982 1 70.5 ? O3A PRP 301 A 1 
HETATM 19 P PB PRP . . . B 2 -32.607 -9.126 7.432 1 78.95 ? PB PRP 301 A 1 
HETATM 20 O O1B PRP . . . B 2 -32.789 -8.735 5.98 1 80 ? O1B PRP 301 A 1 
HETATM 21 O O2B PRP . . . B 2 -33.826 -8.921 8.304 1 80.1 ? O2B PRP 301 A 1 
HETATM 22 O O3B PRP . . . B 2 -31.971 -10.491 7.599 1 77.87 ? O3B PRP 301 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#