data_6FD3 # _model_server_result.job_id lUKz37EOhKbfWiLPC7DN7A _model_server_result.datetime_utc '2025-07-02 06:00:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6FD3 # _exptl.entry_id 6FD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FD3 _cell.length_a 108.825 _cell.length_b 108.825 _cell.length_c 57.934 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 176 A SER 435 1_555 A N T8L 177 A T8L 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C T8L 177 A T8L 436 1_555 A N MET 178 A MET 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASN 148 A ASN 407 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OD2 ASP 161 A ASP 420 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 A OD1 ASP 161 A ASP 420 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 A OD2 ASP 161 A ASP 420 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 B MG MG . A MG 601 1_555 D O2B ADP . A ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 B MG MG . A MG 601 1_555 D O2A ADP . A ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 B MG MG . A MG 601 1_555 G O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 B MG MG . A MG 601 1_555 G O HOH . A HOH 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 C MG MG . A MG 602 1_555 D O3B ADP . A ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc10 C MG MG . A MG 602 1_555 G O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 C MG MG . A MG 602 1_555 G O HOH . A HOH 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 C MG MG . A MG 602 1_555 G O HOH . A HOH 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FD3 _atom_sites.fract_transf_matrix[1][1] 0.009189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 3 ADP A 1 603 1 ADP ADP . E 4 EDO A 1 604 1 EDO EDO . F 4 EDO A 1 605 2 EDO EDO . G 5 HOH A 1 701 205 HOH HOH . G 5 HOH A 2 702 207 HOH HOH . G 5 HOH A 3 703 259 HOH HOH . G 5 HOH A 4 704 258 HOH HOH . G 5 HOH A 5 705 204 HOH HOH . G 5 HOH A 6 706 203 HOH HOH . G 5 HOH A 7 707 248 HOH HOH . G 5 HOH A 8 708 197 HOH HOH . G 5 HOH A 9 709 171 HOH HOH . G 5 HOH A 10 710 157 HOH HOH . G 5 HOH A 11 711 92 HOH HOH . G 5 HOH A 12 712 261 HOH HOH . G 5 HOH A 13 713 175 HOH HOH . G 5 HOH A 14 714 215 HOH HOH . G 5 HOH A 15 715 170 HOH HOH . G 5 HOH A 16 716 240 HOH HOH . G 5 HOH A 17 717 50 HOH HOH . G 5 HOH A 18 718 168 HOH HOH . G 5 HOH A 19 719 247 HOH HOH . G 5 HOH A 20 720 120 HOH HOH . G 5 HOH A 21 721 28 HOH HOH . G 5 HOH A 22 722 190 HOH HOH . G 5 HOH A 23 723 81 HOH HOH . G 5 HOH A 24 724 24 HOH HOH . G 5 HOH A 25 725 89 HOH HOH . G 5 HOH A 26 726 44 HOH HOH . G 5 HOH A 27 727 34 HOH HOH . G 5 HOH A 28 728 191 HOH HOH . G 5 HOH A 29 729 60 HOH HOH . G 5 HOH A 30 730 268 HOH HOH . G 5 HOH A 31 731 104 HOH HOH . G 5 HOH A 32 732 172 HOH HOH . G 5 HOH A 33 733 76 HOH HOH . G 5 HOH A 34 734 133 HOH HOH . G 5 HOH A 35 735 109 HOH HOH . G 5 HOH A 36 736 166 HOH HOH . G 5 HOH A 37 737 11 HOH HOH . G 5 HOH A 38 738 173 HOH HOH . G 5 HOH A 39 739 213 HOH HOH . G 5 HOH A 40 740 2 HOH HOH . G 5 HOH A 41 741 91 HOH HOH . G 5 HOH A 42 742 51 HOH HOH . G 5 HOH A 43 743 22 HOH HOH . G 5 HOH A 44 744 99 HOH HOH . G 5 HOH A 45 745 13 HOH HOH . G 5 HOH A 46 746 255 HOH HOH . G 5 HOH A 47 747 101 HOH HOH . G 5 HOH A 48 748 128 HOH HOH . G 5 HOH A 49 749 54 HOH HOH . G 5 HOH A 50 750 80 HOH HOH . G 5 HOH A 51 751 87 HOH HOH . G 5 HOH A 52 752 88 HOH HOH . G 5 HOH A 53 753 40 HOH HOH . G 5 HOH A 54 754 217 HOH HOH . G 5 HOH A 55 755 78 HOH HOH . G 5 HOH A 56 756 86 HOH HOH . G 5 HOH A 57 757 14 HOH HOH . G 5 HOH A 58 758 126 HOH HOH . G 5 HOH A 59 759 194 HOH HOH . G 5 HOH A 60 760 146 HOH HOH . G 5 HOH A 61 761 26 HOH HOH . G 5 HOH A 62 762 47 HOH HOH . G 5 HOH A 63 763 55 HOH HOH . G 5 HOH A 64 764 7 HOH HOH . G 5 HOH A 65 765 185 HOH HOH . G 5 HOH A 66 766 263 HOH HOH . G 5 HOH A 67 767 31 HOH HOH . G 5 HOH A 68 768 70 HOH HOH . G 5 HOH A 69 769 110 HOH HOH . G 5 HOH A 70 770 256 HOH HOH . G 5 HOH A 71 771 5 HOH HOH . G 5 HOH A 72 772 162 HOH HOH . G 5 HOH A 73 773 85 HOH HOH . G 5 HOH A 74 774 226 HOH HOH . G 5 HOH A 75 775 29 HOH HOH . G 5 HOH A 76 776 187 HOH HOH . G 5 HOH A 77 777 20 HOH HOH . G 5 HOH A 78 778 105 HOH HOH . G 5 HOH A 79 779 236 HOH HOH . G 5 HOH A 80 780 45 HOH HOH . G 5 HOH A 81 781 72 HOH HOH . G 5 HOH A 82 782 132 HOH HOH . G 5 HOH A 83 783 116 HOH HOH . G 5 HOH A 84 784 183 HOH HOH . G 5 HOH A 85 785 25 HOH HOH . G 5 HOH A 86 786 100 HOH HOH . G 5 HOH A 87 787 112 HOH HOH . G 5 HOH A 88 788 153 HOH HOH . G 5 HOH A 89 789 136 HOH HOH . G 5 HOH A 90 790 160 HOH HOH . G 5 HOH A 91 791 265 HOH HOH . G 5 HOH A 92 792 186 HOH HOH . G 5 HOH A 93 793 43 HOH HOH . G 5 HOH A 94 794 156 HOH HOH . G 5 HOH A 95 795 253 HOH HOH . G 5 HOH A 96 796 83 HOH HOH . G 5 HOH A 97 797 73 HOH HOH . G 5 HOH A 98 798 149 HOH HOH . G 5 HOH A 99 799 67 HOH HOH . G 5 HOH A 100 800 18 HOH HOH . G 5 HOH A 101 801 39 HOH HOH . G 5 HOH A 102 802 94 HOH HOH . G 5 HOH A 103 803 66 HOH HOH . G 5 HOH A 104 804 17 HOH HOH . G 5 HOH A 105 805 6 HOH HOH . G 5 HOH A 106 806 75 HOH HOH . G 5 HOH A 107 807 36 HOH HOH . G 5 HOH A 108 808 273 HOH HOH . G 5 HOH A 109 809 93 HOH HOH . G 5 HOH A 110 810 71 HOH HOH . G 5 HOH A 111 811 150 HOH HOH . G 5 HOH A 112 812 98 HOH HOH . G 5 HOH A 113 813 68 HOH HOH . G 5 HOH A 114 814 180 HOH HOH . G 5 HOH A 115 815 97 HOH HOH . G 5 HOH A 116 816 16 HOH HOH . G 5 HOH A 117 817 15 HOH HOH . G 5 HOH A 118 818 188 HOH HOH . G 5 HOH A 119 819 65 HOH HOH . G 5 HOH A 120 820 115 HOH HOH . G 5 HOH A 121 821 3 HOH HOH . G 5 HOH A 122 822 176 HOH HOH . G 5 HOH A 123 823 69 HOH HOH . G 5 HOH A 124 824 196 HOH HOH . G 5 HOH A 125 825 189 HOH HOH . G 5 HOH A 126 826 232 HOH HOH . G 5 HOH A 127 827 252 HOH HOH . G 5 HOH A 128 828 108 HOH HOH . G 5 HOH A 129 829 35 HOH HOH . G 5 HOH A 130 830 210 HOH HOH . G 5 HOH A 131 831 23 HOH HOH . G 5 HOH A 132 832 114 HOH HOH . G 5 HOH A 133 833 218 HOH HOH . G 5 HOH A 134 834 82 HOH HOH . G 5 HOH A 135 835 212 HOH HOH . G 5 HOH A 136 836 206 HOH HOH . G 5 HOH A 137 837 79 HOH HOH . G 5 HOH A 138 838 4 HOH HOH . G 5 HOH A 139 839 208 HOH HOH . G 5 HOH A 140 840 90 HOH HOH . G 5 HOH A 141 841 57 HOH HOH . G 5 HOH A 142 842 118 HOH HOH . G 5 HOH A 143 843 249 HOH HOH . G 5 HOH A 144 844 1 HOH HOH . G 5 HOH A 145 845 46 HOH HOH . G 5 HOH A 146 846 37 HOH HOH . G 5 HOH A 147 847 144 HOH HOH . G 5 HOH A 148 848 223 HOH HOH . G 5 HOH A 149 849 95 HOH HOH . G 5 HOH A 150 850 10 HOH HOH . G 5 HOH A 151 851 193 HOH HOH . G 5 HOH A 152 852 53 HOH HOH . G 5 HOH A 153 853 192 HOH HOH . G 5 HOH A 154 854 123 HOH HOH . G 5 HOH A 155 855 246 HOH HOH . G 5 HOH A 156 856 42 HOH HOH . G 5 HOH A 157 857 134 HOH HOH . G 5 HOH A 158 858 117 HOH HOH . G 5 HOH A 159 859 19 HOH HOH . G 5 HOH A 160 860 48 HOH HOH . G 5 HOH A 161 861 142 HOH HOH . G 5 HOH A 162 862 38 HOH HOH . G 5 HOH A 163 863 151 HOH HOH . G 5 HOH A 164 864 227 HOH HOH . G 5 HOH A 165 865 214 HOH HOH . G 5 HOH A 166 866 124 HOH HOH . G 5 HOH A 167 867 137 HOH HOH . G 5 HOH A 168 868 59 HOH HOH . G 5 HOH A 169 869 211 HOH HOH . G 5 HOH A 170 870 64 HOH HOH . G 5 HOH A 171 871 184 HOH HOH . G 5 HOH A 172 872 127 HOH HOH . G 5 HOH A 173 873 250 HOH HOH . G 5 HOH A 174 874 12 HOH HOH . G 5 HOH A 175 875 96 HOH HOH . G 5 HOH A 176 876 62 HOH HOH . G 5 HOH A 177 877 61 HOH HOH . G 5 HOH A 178 878 9 HOH HOH . G 5 HOH A 179 879 163 HOH HOH . G 5 HOH A 180 880 21 HOH HOH . G 5 HOH A 181 881 195 HOH HOH . G 5 HOH A 182 882 33 HOH HOH . G 5 HOH A 183 883 111 HOH HOH . G 5 HOH A 184 884 152 HOH HOH . G 5 HOH A 185 885 129 HOH HOH . G 5 HOH A 186 886 177 HOH HOH . G 5 HOH A 187 887 30 HOH HOH . G 5 HOH A 188 888 182 HOH HOH . G 5 HOH A 189 889 140 HOH HOH . G 5 HOH A 190 890 63 HOH HOH . G 5 HOH A 191 891 41 HOH HOH . G 5 HOH A 192 892 135 HOH HOH . G 5 HOH A 193 893 221 HOH HOH . G 5 HOH A 194 894 262 HOH HOH . G 5 HOH A 195 895 56 HOH HOH . G 5 HOH A 196 896 242 HOH HOH . G 5 HOH A 197 897 32 HOH HOH . G 5 HOH A 198 898 224 HOH HOH . G 5 HOH A 199 899 139 HOH HOH . G 5 HOH A 200 900 229 HOH HOH . G 5 HOH A 201 901 174 HOH HOH . G 5 HOH A 202 902 84 HOH HOH . G 5 HOH A 203 903 103 HOH HOH . G 5 HOH A 204 904 74 HOH HOH . G 5 HOH A 205 905 167 HOH HOH . G 5 HOH A 206 906 201 HOH HOH . G 5 HOH A 207 907 266 HOH HOH . G 5 HOH A 208 908 274 HOH HOH . G 5 HOH A 209 909 202 HOH HOH . G 5 HOH A 210 910 237 HOH HOH . G 5 HOH A 211 911 141 HOH HOH . G 5 HOH A 212 912 241 HOH HOH . G 5 HOH A 213 913 200 HOH HOH . G 5 HOH A 214 914 125 HOH HOH . G 5 HOH A 215 915 155 HOH HOH . G 5 HOH A 216 916 244 HOH HOH . G 5 HOH A 217 917 257 HOH HOH . G 5 HOH A 218 918 270 HOH HOH . G 5 HOH A 219 919 169 HOH HOH . G 5 HOH A 220 920 220 HOH HOH . G 5 HOH A 221 921 245 HOH HOH . G 5 HOH A 222 922 119 HOH HOH . G 5 HOH A 223 923 275 HOH HOH . G 5 HOH A 224 924 235 HOH HOH . G 5 HOH A 225 925 209 HOH HOH . G 5 HOH A 226 926 276 HOH HOH . G 5 HOH A 227 927 154 HOH HOH . G 5 HOH A 228 928 143 HOH HOH . G 5 HOH A 229 929 228 HOH HOH . G 5 HOH A 230 930 198 HOH HOH . G 5 HOH A 231 931 106 HOH HOH . G 5 HOH A 232 932 49 HOH HOH . G 5 HOH A 233 933 145 HOH HOH . G 5 HOH A 234 934 222 HOH HOH . G 5 HOH A 235 935 233 HOH HOH . G 5 HOH A 236 936 272 HOH HOH . G 5 HOH A 237 937 251 HOH HOH . G 5 HOH A 238 938 199 HOH HOH . G 5 HOH A 239 939 231 HOH HOH . G 5 HOH A 240 940 269 HOH HOH . G 5 HOH A 241 941 27 HOH HOH . G 5 HOH A 242 942 161 HOH HOH . G 5 HOH A 243 943 178 HOH HOH . G 5 HOH A 244 944 164 HOH HOH . G 5 HOH A 245 945 147 HOH HOH . G 5 HOH A 246 946 77 HOH HOH . G 5 HOH A 247 947 239 HOH HOH . G 5 HOH A 248 948 158 HOH HOH . G 5 HOH A 249 949 122 HOH HOH . G 5 HOH A 250 950 107 HOH HOH . G 5 HOH A 251 951 52 HOH HOH . G 5 HOH A 252 952 8 HOH HOH . G 5 HOH A 253 953 225 HOH HOH . G 5 HOH A 254 954 159 HOH HOH . G 5 HOH A 255 955 243 HOH HOH . G 5 HOH A 256 956 113 HOH HOH . G 5 HOH A 257 957 179 HOH HOH . G 5 HOH A 258 958 58 HOH HOH . G 5 HOH A 259 959 148 HOH HOH . G 5 HOH A 260 960 216 HOH HOH . G 5 HOH A 261 961 238 HOH HOH . G 5 HOH A 262 962 271 HOH HOH . G 5 HOH A 263 963 219 HOH HOH . G 5 HOH A 264 964 138 HOH HOH . G 5 HOH A 265 965 181 HOH HOH . G 5 HOH A 266 966 264 HOH HOH . G 5 HOH A 267 967 234 HOH HOH . G 5 HOH A 268 968 267 HOH HOH . G 5 HOH A 269 969 130 HOH HOH . G 5 HOH A 270 970 260 HOH HOH . G 5 HOH A 271 971 254 HOH HOH . G 5 HOH A 272 972 131 HOH HOH . G 5 HOH A 273 973 121 HOH HOH . G 5 HOH A 274 974 165 HOH HOH . G 5 HOH A 275 975 230 HOH HOH . G 5 HOH A 276 976 102 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.851 _atom_site.Cartn_y 87.327 _atom_site.Cartn_z -5.055 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #