data_6FD5
#
_model_server_result.job_id            Hdr6wq138zMH6ObpwkAxaA 
_model_server_result.datetime_utc      '2024-11-23 06:53:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    6FD5 
#
_exptl.entry_id    6FD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         77.3 
_cell.angle_beta          61.71 
_cell.angle_gamma         69.47 
_cell.entry_id            6FD5 
_cell.length_a            47.232 
_cell.length_b            47.75 
_cell.length_c            48.039 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O3' AMP . A AMP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc2 C O2' AMP . A AMP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc3 D O21 PPV . A PPV 202 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc4 D O22 PPV . A PPV 202 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc5 E MG MG . A MG 203 1_555 K O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 E MG MG . A MG 203 1_555 K O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc7 G O1 PRP . B PRP 200 1_555 I MG MG . B MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 G O2 PRP . B PRP 200 1_555 I MG MG . B MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc9 G O3 PRP . B PRP 200 1_555 I MG MG . B MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 G O2B PRP . B PRP 200 1_555 I MG MG . B MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc11 H O3' AMP . B AMP 201 1_555 I MG MG . B MG 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc12 I MG MG . B MG 202 1_555 J O12 PPV . B PPV 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc13 I MG MG . B MG 202 1_555 J O21 PPV . B PPV 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc14 I MG MG . B MG 202 1_555 L O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc15 I MG MG . B MG 202 1_555 L O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6FD5 
_atom_sites.fract_transf_matrix[1][1]    0.021172 
_atom_sites.fract_transf_matrix[1][2]    -0.007928 
_atom_sites.fract_transf_matrix[1][3]    -0.0109 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022362 
_atom_sites.fract_transf_matrix[2][3]    -0.00146 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023689 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 201 201 AMP AMP . 
D 3 PPV A 1 202 202 PPV PPV . 
E 4 MG A 1 203 203 MG MG . 
F 5 GOL A 1 204 204 GOL GOL . 
G 6 PRP B 1 200 200 PRP PRP . 
H 2 AMP B 1 201 201 AMP AMP . 
I 4 MG B 1 202 202 MG MG . 
J 3 PPV B 1 203 203 PPV PPV . 
K 7 HOH A 1 301 301 HOH HOH . 
K 7 HOH A 2 302 302 HOH HOH . 
K 7 HOH A 3 303 303 HOH HOH . 
K 7 HOH A 4 304 304 HOH HOH . 
K 7 HOH A 5 305 305 HOH HOH . 
K 7 HOH A 6 306 306 HOH HOH . 
K 7 HOH A 7 307 307 HOH HOH . 
K 7 HOH A 8 308 308 HOH HOH . 
K 7 HOH A 9 309 309 HOH HOH . 
K 7 HOH A 10 310 310 HOH HOH . 
K 7 HOH A 11 311 311 HOH HOH . 
K 7 HOH A 12 312 312 HOH HOH . 
K 7 HOH A 13 313 313 HOH HOH . 
K 7 HOH A 14 314 314 HOH HOH . 
K 7 HOH A 15 315 315 HOH HOH . 
K 7 HOH A 16 316 316 HOH HOH . 
K 7 HOH A 17 317 317 HOH HOH . 
K 7 HOH A 18 318 318 HOH HOH . 
K 7 HOH A 19 319 319 HOH HOH . 
K 7 HOH A 20 320 320 HOH HOH . 
K 7 HOH A 21 321 321 HOH HOH . 
K 7 HOH A 22 322 322 HOH HOH . 
K 7 HOH A 23 323 323 HOH HOH . 
K 7 HOH A 24 324 324 HOH HOH . 
K 7 HOH A 25 325 325 HOH HOH . 
K 7 HOH A 26 326 326 HOH HOH . 
K 7 HOH A 27 327 327 HOH HOH . 
K 7 HOH A 28 328 328 HOH HOH . 
K 7 HOH A 29 329 329 HOH HOH . 
K 7 HOH A 30 330 330 HOH HOH . 
K 7 HOH A 31 331 331 HOH HOH . 
K 7 HOH A 32 332 332 HOH HOH . 
K 7 HOH A 33 333 333 HOH HOH . 
K 7 HOH A 34 334 334 HOH HOH . 
K 7 HOH A 35 335 335 HOH HOH . 
K 7 HOH A 36 336 336 HOH HOH . 
K 7 HOH A 37 337 337 HOH HOH . 
K 7 HOH A 38 338 338 HOH HOH . 
K 7 HOH A 39 339 339 HOH HOH . 
K 7 HOH A 40 340 340 HOH HOH . 
K 7 HOH A 41 341 341 HOH HOH . 
K 7 HOH A 42 342 342 HOH HOH . 
K 7 HOH A 43 343 343 HOH HOH . 
K 7 HOH A 44 344 344 HOH HOH . 
K 7 HOH A 45 345 345 HOH HOH . 
K 7 HOH A 46 346 346 HOH HOH . 
K 7 HOH A 47 347 347 HOH HOH . 
K 7 HOH A 48 348 348 HOH HOH . 
K 7 HOH A 49 349 349 HOH HOH . 
K 7 HOH A 50 350 350 HOH HOH . 
K 7 HOH A 51 351 351 HOH HOH . 
K 7 HOH A 52 352 352 HOH HOH . 
K 7 HOH A 53 353 353 HOH HOH . 
K 7 HOH A 54 354 354 HOH HOH . 
K 7 HOH A 55 355 355 HOH HOH . 
K 7 HOH A 56 356 356 HOH HOH . 
K 7 HOH A 57 357 357 HOH HOH . 
K 7 HOH A 58 358 358 HOH HOH . 
K 7 HOH A 59 359 359 HOH HOH . 
K 7 HOH A 60 360 360 HOH HOH . 
K 7 HOH A 61 361 361 HOH HOH . 
K 7 HOH A 62 362 362 HOH HOH . 
K 7 HOH A 63 363 363 HOH HOH . 
K 7 HOH A 64 364 364 HOH HOH . 
K 7 HOH A 65 365 365 HOH HOH . 
K 7 HOH A 66 366 366 HOH HOH . 
K 7 HOH A 67 367 367 HOH HOH . 
K 7 HOH A 68 368 368 HOH HOH . 
K 7 HOH A 69 369 369 HOH HOH . 
K 7 HOH A 70 370 370 HOH HOH . 
K 7 HOH A 71 371 371 HOH HOH . 
K 7 HOH A 72 372 372 HOH HOH . 
K 7 HOH A 73 373 373 HOH HOH . 
K 7 HOH A 74 374 374 HOH HOH . 
K 7 HOH A 75 375 375 HOH HOH . 
K 7 HOH A 76 376 376 HOH HOH . 
K 7 HOH A 77 377 377 HOH HOH . 
K 7 HOH A 78 378 378 HOH HOH . 
K 7 HOH A 79 379 379 HOH HOH . 
K 7 HOH A 80 380 380 HOH HOH . 
K 7 HOH A 81 381 381 HOH HOH . 
K 7 HOH A 82 382 382 HOH HOH . 
K 7 HOH A 83 383 383 HOH HOH . 
K 7 HOH A 84 384 384 HOH HOH . 
K 7 HOH A 85 385 385 HOH HOH . 
K 7 HOH A 86 386 386 HOH HOH . 
K 7 HOH A 87 387 387 HOH HOH . 
K 7 HOH A 88 388 388 HOH HOH . 
K 7 HOH A 89 389 389 HOH HOH . 
K 7 HOH A 90 390 390 HOH HOH . 
K 7 HOH A 91 391 391 HOH HOH . 
K 7 HOH A 92 392 392 HOH HOH . 
K 7 HOH A 93 393 393 HOH HOH . 
K 7 HOH A 94 394 394 HOH HOH . 
K 7 HOH A 95 395 395 HOH HOH . 
K 7 HOH A 96 396 396 HOH HOH . 
K 7 HOH A 97 397 397 HOH HOH . 
K 7 HOH A 98 398 398 HOH HOH . 
K 7 HOH A 99 399 399 HOH HOH . 
K 7 HOH A 100 400 400 HOH HOH . 
K 7 HOH A 101 401 401 HOH HOH . 
K 7 HOH A 102 402 402 HOH HOH . 
K 7 HOH A 103 403 403 HOH HOH . 
K 7 HOH A 104 404 404 HOH HOH . 
K 7 HOH A 105 405 405 HOH HOH . 
K 7 HOH A 106 406 406 HOH HOH . 
K 7 HOH A 107 407 407 HOH HOH . 
K 7 HOH A 108 408 408 HOH HOH . 
K 7 HOH A 109 409 409 HOH HOH . 
K 7 HOH A 110 410 410 HOH HOH . 
K 7 HOH A 111 411 411 HOH HOH . 
L 7 HOH B 1 301 301 HOH HOH . 
L 7 HOH B 2 302 302 HOH HOH . 
L 7 HOH B 3 303 303 HOH HOH . 
L 7 HOH B 4 304 304 HOH HOH . 
L 7 HOH B 5 305 305 HOH HOH . 
L 7 HOH B 6 306 306 HOH HOH . 
L 7 HOH B 7 307 307 HOH HOH . 
L 7 HOH B 8 308 308 HOH HOH . 
L 7 HOH B 9 309 309 HOH HOH . 
L 7 HOH B 10 310 310 HOH HOH . 
L 7 HOH B 11 311 311 HOH HOH . 
L 7 HOH B 12 312 312 HOH HOH . 
L 7 HOH B 13 313 313 HOH HOH . 
L 7 HOH B 14 314 314 HOH HOH . 
L 7 HOH B 15 315 315 HOH HOH . 
L 7 HOH B 16 316 316 HOH HOH . 
L 7 HOH B 17 317 317 HOH HOH . 
L 7 HOH B 18 318 318 HOH HOH . 
L 7 HOH B 19 319 319 HOH HOH . 
L 7 HOH B 20 320 320 HOH HOH . 
L 7 HOH B 21 321 321 HOH HOH . 
L 7 HOH B 22 322 322 HOH HOH . 
L 7 HOH B 23 323 323 HOH HOH . 
L 7 HOH B 24 324 324 HOH HOH . 
L 7 HOH B 25 325 325 HOH HOH . 
L 7 HOH B 26 326 326 HOH HOH . 
L 7 HOH B 27 327 327 HOH HOH . 
L 7 HOH B 28 328 328 HOH HOH . 
L 7 HOH B 29 329 329 HOH HOH . 
L 7 HOH B 30 330 330 HOH HOH . 
L 7 HOH B 31 331 331 HOH HOH . 
L 7 HOH B 32 332 332 HOH HOH . 
L 7 HOH B 33 333 333 HOH HOH . 
L 7 HOH B 34 334 334 HOH HOH . 
L 7 HOH B 35 335 335 HOH HOH . 
L 7 HOH B 36 336 336 HOH HOH . 
L 7 HOH B 37 337 337 HOH HOH . 
L 7 HOH B 38 338 338 HOH HOH . 
L 7 HOH B 39 339 339 HOH HOH . 
L 7 HOH B 40 340 340 HOH HOH . 
L 7 HOH B 41 341 341 HOH HOH . 
L 7 HOH B 42 342 342 HOH HOH . 
L 7 HOH B 43 343 343 HOH HOH . 
L 7 HOH B 44 344 344 HOH HOH . 
L 7 HOH B 45 345 345 HOH HOH . 
L 7 HOH B 46 346 346 HOH HOH . 
L 7 HOH B 47 347 347 HOH HOH . 
L 7 HOH B 48 348 348 HOH HOH . 
L 7 HOH B 49 349 349 HOH HOH . 
L 7 HOH B 50 350 350 HOH HOH . 
L 7 HOH B 51 351 351 HOH HOH . 
L 7 HOH B 52 352 352 HOH HOH . 
L 7 HOH B 53 353 353 HOH HOH . 
L 7 HOH B 54 354 354 HOH HOH . 
L 7 HOH B 55 355 355 HOH HOH . 
L 7 HOH B 56 356 356 HOH HOH . 
L 7 HOH B 57 357 357 HOH HOH . 
L 7 HOH B 58 358 358 HOH HOH . 
L 7 HOH B 59 359 359 HOH HOH . 
L 7 HOH B 60 360 360 HOH HOH . 
L 7 HOH B 61 361 361 HOH HOH . 
L 7 HOH B 62 362 362 HOH HOH . 
L 7 HOH B 63 363 363 HOH HOH . 
L 7 HOH B 64 364 364 HOH HOH . 
L 7 HOH B 65 365 365 HOH HOH . 
L 7 HOH B 66 366 366 HOH HOH . 
L 7 HOH B 67 367 367 HOH HOH . 
L 7 HOH B 68 368 368 HOH HOH . 
L 7 HOH B 69 369 369 HOH HOH . 
L 7 HOH B 70 370 370 HOH HOH . 
L 7 HOH B 71 371 371 HOH HOH . 
L 7 HOH B 72 372 372 HOH HOH . 
L 7 HOH B 73 373 373 HOH HOH . 
L 7 HOH B 74 374 374 HOH HOH . 
L 7 HOH B 75 375 375 HOH HOH . 
L 7 HOH B 76 376 376 HOH HOH . 
L 7 HOH B 77 377 377 HOH HOH . 
L 7 HOH B 78 378 378 HOH HOH . 
L 7 HOH B 79 379 379 HOH HOH . 
L 7 HOH B 80 380 380 HOH HOH . 
L 7 HOH B 81 381 381 HOH HOH . 
L 7 HOH B 82 382 382 HOH HOH . 
L 7 HOH B 83 383 383 HOH HOH . 
L 7 HOH B 84 384 384 HOH HOH . 
L 7 HOH B 85 385 385 HOH HOH . 
L 7 HOH B 86 386 386 HOH HOH . 
L 7 HOH B 87 387 387 HOH HOH . 
L 7 HOH B 88 388 388 HOH HOH . 
L 7 HOH B 89 389 389 HOH HOH . 
L 7 HOH B 90 390 390 HOH HOH . 
L 7 HOH B 91 391 391 HOH HOH . 
L 7 HOH B 92 392 392 HOH HOH . 
L 7 HOH B 93 393 393 HOH HOH . 
L 7 HOH B 94 394 394 HOH HOH . 
L 7 HOH B 95 395 395 HOH HOH . 
L 7 HOH B 96 396 396 HOH HOH . 
L 7 HOH B 97 397 397 HOH HOH . 
L 7 HOH B 98 398 398 HOH HOH . 
L 7 HOH B 99 399 399 HOH HOH . 
L 7 HOH B 100 400 400 HOH HOH . 
L 7 HOH B 101 401 401 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               18.723 
_atom_site.Cartn_y               -2.994 
_atom_site.Cartn_z               -7.205 
_atom_site.occupancy             0.55 
_atom_site.B_iso_or_equiv        18.84 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#