data_6FD6 # _model_server_result.job_id 4fW3HmkNshlP5QXbZ8UIlw _model_server_result.datetime_utc '2024-11-23 06:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6FD6 # _exptl.entry_id 6FD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.93 _cell.angle_beta 61.5 _cell.angle_gamma 69.41 _cell.entry_id 6FD6 _cell.length_a 47.17 _cell.length_b 47.79 _cell.length_c 47.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O3' AMP . B AMP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 E O2' AMP . B AMP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc3 F MG MG . B MG 202 1_555 G O21 PPV . B PPV 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc4 F MG MG . B MG 202 1_555 G O22 PPV . B PPV 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 F MG MG . B MG 202 1_555 I O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 F MG MG . B MG 202 1_555 I O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 299 n n O11 H11 PPV sing 300 n n P1 O21 PPV sing 301 n n P1 O31 PPV doub 302 n n P1 OPP PPV sing 303 n n O21 H21 PPV sing 304 n n OPP P2 PPV sing 305 n n P2 O12 PPV sing 306 n n P2 O22 PPV doub 307 n n P2 O32 PPV sing 308 n n O12 H12 PPV sing 309 n n O32 H32 PPV sing 310 n n # _atom_sites.entry_id 6FD6 _atom_sites.fract_transf_matrix[1][1] 0.0212 _atom_sites.fract_transf_matrix[1][2] -0.007964 _atom_sites.fract_transf_matrix[1][3] -0.010974 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022353 _atom_sites.fract_transf_matrix[2][3] -0.001589 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 200 200 AMP AMP . D 3 PPV A 1 201 201 PPV PPV . E 2 AMP B 1 201 201 AMP AMP . F 4 MG B 1 202 202 MG MG . G 3 PPV B 1 203 203 PPV PPV . H 5 HOH A 1 301 301 HOH HOH . H 5 HOH A 2 302 302 HOH HOH . H 5 HOH A 3 303 303 HOH HOH . H 5 HOH A 4 304 304 HOH HOH . H 5 HOH A 5 305 305 HOH HOH . H 5 HOH A 6 306 306 HOH HOH . H 5 HOH A 7 307 307 HOH HOH . H 5 HOH A 8 308 308 HOH HOH . H 5 HOH A 9 309 309 HOH HOH . H 5 HOH A 10 310 310 HOH HOH . H 5 HOH A 11 311 311 HOH HOH . H 5 HOH A 12 312 312 HOH HOH . H 5 HOH A 13 313 313 HOH HOH . H 5 HOH A 14 314 314 HOH HOH . H 5 HOH A 15 315 315 HOH HOH . H 5 HOH A 16 316 316 HOH HOH . H 5 HOH A 17 317 317 HOH HOH . H 5 HOH A 18 318 318 HOH HOH . H 5 HOH A 19 319 319 HOH HOH . H 5 HOH A 20 320 320 HOH HOH . H 5 HOH A 21 321 321 HOH HOH . H 5 HOH A 22 322 322 HOH HOH . H 5 HOH A 23 323 323 HOH HOH . H 5 HOH A 24 324 324 HOH HOH . H 5 HOH A 25 325 325 HOH HOH . H 5 HOH A 26 326 326 HOH HOH . H 5 HOH A 27 327 327 HOH HOH . H 5 HOH A 28 328 328 HOH HOH . H 5 HOH A 29 329 329 HOH HOH . H 5 HOH A 30 330 330 HOH HOH . H 5 HOH A 31 331 331 HOH HOH . H 5 HOH A 32 332 332 HOH HOH . H 5 HOH A 33 333 333 HOH HOH . H 5 HOH A 34 334 334 HOH HOH . H 5 HOH A 35 335 335 HOH HOH . H 5 HOH A 36 336 336 HOH HOH . H 5 HOH A 37 337 337 HOH HOH . H 5 HOH A 38 338 338 HOH HOH . H 5 HOH A 39 339 339 HOH HOH . H 5 HOH A 40 340 340 HOH HOH . H 5 HOH A 41 341 341 HOH HOH . H 5 HOH A 42 342 342 HOH HOH . H 5 HOH A 43 343 343 HOH HOH . H 5 HOH A 44 344 344 HOH HOH . H 5 HOH A 45 345 345 HOH HOH . H 5 HOH A 46 346 346 HOH HOH . H 5 HOH A 47 347 347 HOH HOH . H 5 HOH A 48 348 348 HOH HOH . H 5 HOH A 49 349 349 HOH HOH . H 5 HOH A 50 350 350 HOH HOH . H 5 HOH A 51 351 351 HOH HOH . H 5 HOH A 52 352 352 HOH HOH . H 5 HOH A 53 353 353 HOH HOH . H 5 HOH A 54 354 354 HOH HOH . H 5 HOH A 55 355 355 HOH HOH . H 5 HOH A 56 356 356 HOH HOH . H 5 HOH A 57 357 357 HOH HOH . H 5 HOH A 58 358 358 HOH HOH . H 5 HOH A 59 359 359 HOH HOH . H 5 HOH A 60 360 360 HOH HOH . H 5 HOH A 61 361 361 HOH HOH . H 5 HOH A 62 362 362 HOH HOH . H 5 HOH A 63 363 363 HOH HOH . H 5 HOH A 64 364 364 HOH HOH . H 5 HOH A 65 365 365 HOH HOH . H 5 HOH A 66 366 366 HOH HOH . H 5 HOH A 67 367 367 HOH HOH . H 5 HOH A 68 368 368 HOH HOH . H 5 HOH A 69 369 369 HOH HOH . H 5 HOH A 70 370 370 HOH HOH . H 5 HOH A 71 371 371 HOH HOH . H 5 HOH A 72 372 372 HOH HOH . H 5 HOH A 73 373 373 HOH HOH . H 5 HOH A 74 374 374 HOH HOH . H 5 HOH A 75 375 375 HOH HOH . H 5 HOH A 76 376 376 HOH HOH . H 5 HOH A 77 377 377 HOH HOH . H 5 HOH A 78 378 378 HOH HOH . H 5 HOH A 79 379 379 HOH HOH . H 5 HOH A 80 380 380 HOH HOH . H 5 HOH A 81 381 381 HOH HOH . I 5 HOH B 1 301 301 HOH HOH . I 5 HOH B 2 302 302 HOH HOH . I 5 HOH B 3 303 303 HOH HOH . I 5 HOH B 4 304 304 HOH HOH . I 5 HOH B 5 305 305 HOH HOH . I 5 HOH B 6 306 306 HOH HOH . I 5 HOH B 7 307 307 HOH HOH . I 5 HOH B 8 308 308 HOH HOH . I 5 HOH B 9 309 309 HOH HOH . I 5 HOH B 10 310 310 HOH HOH . I 5 HOH B 11 311 311 HOH HOH . I 5 HOH B 12 312 312 HOH HOH . I 5 HOH B 13 313 313 HOH HOH . I 5 HOH B 14 314 314 HOH HOH . I 5 HOH B 15 315 315 HOH HOH . I 5 HOH B 16 316 316 HOH HOH . I 5 HOH B 17 317 317 HOH HOH . I 5 HOH B 18 318 318 HOH HOH . I 5 HOH B 19 319 319 HOH HOH . I 5 HOH B 20 320 320 HOH HOH . I 5 HOH B 21 321 321 HOH HOH . I 5 HOH B 22 322 322 HOH HOH . I 5 HOH B 23 323 323 HOH HOH . I 5 HOH B 24 324 324 HOH HOH . I 5 HOH B 25 325 325 HOH HOH . I 5 HOH B 26 326 326 HOH HOH . I 5 HOH B 27 327 327 HOH HOH . I 5 HOH B 28 328 328 HOH HOH . I 5 HOH B 29 329 329 HOH HOH . I 5 HOH B 30 330 330 HOH HOH . I 5 HOH B 31 331 331 HOH HOH . I 5 HOH B 32 332 332 HOH HOH . I 5 HOH B 33 333 333 HOH HOH . I 5 HOH B 34 334 334 HOH HOH . I 5 HOH B 35 335 335 HOH HOH . I 5 HOH B 36 336 336 HOH HOH . I 5 HOH B 37 337 337 HOH HOH . I 5 HOH B 38 338 338 HOH HOH . I 5 HOH B 39 339 339 HOH HOH . I 5 HOH B 40 340 340 HOH HOH . I 5 HOH B 41 341 341 HOH HOH . I 5 HOH B 42 342 342 HOH HOH . I 5 HOH B 43 343 343 HOH HOH . I 5 HOH B 44 344 344 HOH HOH . I 5 HOH B 45 345 345 HOH HOH . I 5 HOH B 46 346 346 HOH HOH . I 5 HOH B 47 347 347 HOH HOH . I 5 HOH B 48 348 348 HOH HOH . I 5 HOH B 49 349 349 HOH HOH . I 5 HOH B 50 350 350 HOH HOH . I 5 HOH B 51 351 351 HOH HOH . I 5 HOH B 52 352 352 HOH HOH . I 5 HOH B 53 353 353 HOH HOH . I 5 HOH B 54 354 354 HOH HOH . I 5 HOH B 55 355 355 HOH HOH . I 5 HOH B 56 356 356 HOH HOH . I 5 HOH B 57 357 357 HOH HOH . I 5 HOH B 58 358 358 HOH HOH . I 5 HOH B 59 359 359 HOH HOH . I 5 HOH B 60 360 360 HOH HOH . I 5 HOH B 61 361 361 HOH HOH . I 5 HOH B 62 362 362 HOH HOH . I 5 HOH B 63 363 363 HOH HOH . I 5 HOH B 64 364 364 HOH HOH . I 5 HOH B 65 365 365 HOH HOH . I 5 HOH B 66 366 366 HOH HOH . I 5 HOH B 67 367 367 HOH HOH . I 5 HOH B 68 368 368 HOH HOH . I 5 HOH B 69 369 369 HOH HOH . I 5 HOH B 70 370 370 HOH HOH . I 5 HOH B 71 371 371 HOH HOH . I 5 HOH B 72 372 372 HOH HOH . I 5 HOH B 73 373 373 HOH HOH . I 5 HOH B 74 374 374 HOH HOH . I 5 HOH B 75 375 375 HOH HOH . I 5 HOH B 76 376 376 HOH HOH . I 5 HOH B 77 377 377 HOH HOH . I 5 HOH B 78 378 378 HOH HOH . I 5 HOH B 79 379 379 HOH HOH . I 5 HOH B 80 380 380 HOH HOH . I 5 HOH B 81 381 381 HOH HOH . I 5 HOH B 82 382 382 HOH HOH . I 5 HOH B 83 383 383 HOH HOH . I 5 HOH B 84 384 384 HOH HOH . I 5 HOH B 85 385 385 HOH HOH . I 5 HOH B 86 386 386 HOH HOH . I 5 HOH B 87 387 387 HOH HOH . I 5 HOH B 88 388 388 HOH HOH . I 5 HOH B 89 389 389 HOH HOH . I 5 HOH B 90 390 390 HOH HOH . I 5 HOH B 91 391 391 HOH HOH . I 5 HOH B 92 392 392 HOH HOH . I 5 HOH B 93 393 393 HOH HOH . I 5 HOH B 94 394 394 HOH HOH . I 5 HOH B 95 395 395 HOH HOH . I 5 HOH B 96 396 396 HOH HOH . I 5 HOH B 97 397 397 HOH HOH . I 5 HOH B 98 398 398 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . D 3 -19.965 7.577 2.968 0.7 27.12 ? O11 PPV 201 A 1 HETATM 2 P P1 PPV . . . D 3 -18.897 6.501 2.984 0.7 29.32 ? P1 PPV 201 A 1 HETATM 3 O O21 PPV . . . D 3 -18.578 5.992 4.377 0.7 31.02 ? O21 PPV 201 A 1 HETATM 4 O O31 PPV . . . D 3 -17.697 6.871 2.138 0.7 28.22 ? O31 PPV 201 A 1 HETATM 5 O OPP PPV . . . D 3 -19.593 5.308 2.131 0.7 27.97 ? OPP PPV 201 A 1 HETATM 6 P P2 PPV . . . D 3 -19.693 3.713 2.395 0.7 23.13 ? P2 PPV 201 A 1 HETATM 7 O O12 PPV . . . D 3 -20.068 3.491 3.847 0.7 28.28 ? O12 PPV 201 A 1 HETATM 8 O O22 PPV . . . D 3 -20.756 3.356 1.373 0.7 20.97 ? O22 PPV 201 A 1 HETATM 9 O O32 PPV . . . D 3 -18.343 3.17 2.041 0.7 20.03 ? O32 PPV 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #