data_6FDS # _model_server_result.job_id JLn1J7l3vtkvUie-IWqiiA _model_server_result.datetime_utc '2024-11-26 22:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 6FDS # _exptl.entry_id 6FDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.07 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANIDINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.05 _cell.angle_gamma 90 _cell.entry_id 6FDS _cell.length_a 112.72 _cell.length_b 120.17 _cell.length_c 68.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 I N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 115 A HIS 673 1_555 G ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A NE2 HIS 151 A HIS 709 1_555 G ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 A OD2 ASP 152 A ASP 710 1_555 G ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 A OD1 ASP 152 A ASP 710 1_555 H MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc5 A OD1 ASP 264 A ASP 822 1_555 G ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 G ZN ZN . A ZN 1005 1_555 P O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 G ZN ZN . A ZN 1005 1_555 P O HOH . A HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 H MG MG . A MG 1006 1_555 P O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc9 H MG MG . A MG 1006 1_555 P O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc10 H MG MG . A MG 1006 1_555 P O HOH . A HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc11 H MG MG . A MG 1006 1_555 P O HOH . A HOH 1169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc12 H MG MG . A MG 1006 1_555 P O HOH . A HOH 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc13 B NE2 HIS 115 B HIS 673 1_555 K ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc14 B NE2 HIS 151 B HIS 709 1_555 K ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc15 B OD1 ASP 152 B ASP 710 1_555 J MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc16 B OD2 ASP 152 B ASP 710 1_555 K ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc17 B OD1 ASP 264 B ASP 822 1_555 K ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc18 J MG MG . B MG 1001 1_555 Q O HOH . B HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? metalc ? metalc19 J MG MG . B MG 1001 1_555 Q O HOH . B HOH 1138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc20 J MG MG . B MG 1001 1_555 Q O HOH . B HOH 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc21 J MG MG . B MG 1001 1_555 Q O HOH . B HOH 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc22 K ZN ZN . B ZN 1002 1_555 Q O HOH . B HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc23 K ZN ZN . B ZN 1002 1_555 Q O HOH . B HOH 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'C H5 N3' _chem_comp.formula_weight 59.07 _chem_comp.id GAI _chem_comp.mon_nstd_flag . _chem_comp.name GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N1 GAI doub 165 n n C N2 GAI sing 166 n n C N3 GAI sing 167 n n N1 HN1 GAI sing 168 n n N2 HN21 GAI sing 169 n n N2 HN22 GAI sing 170 n n N3 HN31 GAI sing 171 n n N3 HN32 GAI sing 172 n n # _atom_sites.entry_id 6FDS _atom_sites.fract_transf_matrix[1][1] 0.008872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GAI A 1 1001 919 GAI GAI . D 3 D5T A 1 1002 920 D5T D5T . E 2 GAI A 1 1003 921 GAI GAI . F 2 GAI A 1 1004 922 GAI GAI . G 4 ZN A 1 1005 923 ZN ZN . H 5 MG A 1 1006 924 MG MG . I 2 GAI A 1 1007 925 GAI GAI . J 5 MG B 1 1001 918 MG MG . K 4 ZN B 1 1002 919 ZN ZN . L 6 GOL B 1 1003 920 GOL GOL . M 2 GAI B 1 1004 921 GAI GAI . N 2 GAI B 1 1005 922 GAI GAI . O 3 D5T B 1 1006 923 D5T D5T . P 7 HOH A 1 1101 1012 HOH HOH . P 7 HOH A 2 1102 1009 HOH HOH . P 7 HOH A 3 1103 970 HOH HOH . P 7 HOH A 4 1104 1019 HOH HOH . P 7 HOH A 5 1105 986 HOH HOH . P 7 HOH A 6 1106 1021 HOH HOH . P 7 HOH A 7 1107 958 HOH HOH . P 7 HOH A 8 1108 939 HOH HOH . P 7 HOH A 9 1109 981 HOH HOH . P 7 HOH A 10 1110 953 HOH HOH . P 7 HOH A 11 1111 1013 HOH HOH . P 7 HOH A 12 1112 962 HOH HOH . P 7 HOH A 13 1113 935 HOH HOH . P 7 HOH A 14 1114 955 HOH HOH . P 7 HOH A 15 1115 933 HOH HOH . P 7 HOH A 16 1116 1008 HOH HOH . P 7 HOH A 17 1117 1000 HOH HOH . P 7 HOH A 18 1118 992 HOH HOH . P 7 HOH A 19 1119 973 HOH HOH . P 7 HOH A 20 1120 957 HOH HOH . P 7 HOH A 21 1121 978 HOH HOH . P 7 HOH A 22 1122 952 HOH HOH . P 7 HOH A 23 1123 994 HOH HOH . P 7 HOH A 24 1124 1029 HOH HOH . P 7 HOH A 25 1125 931 HOH HOH . P 7 HOH A 26 1126 996 HOH HOH . P 7 HOH A 27 1127 951 HOH HOH . P 7 HOH A 28 1128 1028 HOH HOH . P 7 HOH A 29 1129 942 HOH HOH . P 7 HOH A 30 1130 936 HOH HOH . P 7 HOH A 31 1131 988 HOH HOH . P 7 HOH A 32 1132 1003 HOH HOH . P 7 HOH A 33 1133 993 HOH HOH . P 7 HOH A 34 1134 941 HOH HOH . P 7 HOH A 35 1135 961 HOH HOH . P 7 HOH A 36 1136 932 HOH HOH . P 7 HOH A 37 1137 948 HOH HOH . P 7 HOH A 38 1138 997 HOH HOH . P 7 HOH A 39 1139 940 HOH HOH . P 7 HOH A 40 1140 976 HOH HOH . P 7 HOH A 41 1141 927 HOH HOH . P 7 HOH A 42 1142 980 HOH HOH . P 7 HOH A 43 1143 937 HOH HOH . P 7 HOH A 44 1144 968 HOH HOH . P 7 HOH A 45 1145 954 HOH HOH . P 7 HOH A 46 1146 966 HOH HOH . P 7 HOH A 47 1147 934 HOH HOH . P 7 HOH A 48 1148 950 HOH HOH . P 7 HOH A 49 1149 949 HOH HOH . P 7 HOH A 50 1150 995 HOH HOH . P 7 HOH A 51 1151 938 HOH HOH . P 7 HOH A 52 1152 1027 HOH HOH . P 7 HOH A 53 1153 959 HOH HOH . P 7 HOH A 54 1154 1015 HOH HOH . P 7 HOH A 55 1155 971 HOH HOH . P 7 HOH A 56 1156 1007 HOH HOH . P 7 HOH A 57 1157 945 HOH HOH . P 7 HOH A 58 1158 956 HOH HOH . P 7 HOH A 59 1159 965 HOH HOH . P 7 HOH A 60 1160 946 HOH HOH . P 7 HOH A 61 1161 928 HOH HOH . P 7 HOH A 62 1162 1016 HOH HOH . P 7 HOH A 63 1163 1017 HOH HOH . P 7 HOH A 64 1164 1001 HOH HOH . P 7 HOH A 65 1165 1026 HOH HOH . P 7 HOH A 66 1166 929 HOH HOH . P 7 HOH A 67 1167 989 HOH HOH . P 7 HOH A 68 1168 960 HOH HOH . P 7 HOH A 69 1169 991 HOH HOH . P 7 HOH A 70 1170 977 HOH HOH . P 7 HOH A 71 1171 967 HOH HOH . P 7 HOH A 72 1172 999 HOH HOH . P 7 HOH A 73 1173 1025 HOH HOH . P 7 HOH A 74 1174 1010 HOH HOH . P 7 HOH A 75 1175 984 HOH HOH . P 7 HOH A 76 1176 926 HOH HOH . P 7 HOH A 77 1177 975 HOH HOH . P 7 HOH A 78 1178 985 HOH HOH . P 7 HOH A 79 1179 1014 HOH HOH . P 7 HOH A 80 1180 974 HOH HOH . P 7 HOH A 81 1181 943 HOH HOH . P 7 HOH A 82 1182 1011 HOH HOH . P 7 HOH A 83 1183 1020 HOH HOH . P 7 HOH A 84 1184 982 HOH HOH . P 7 HOH A 85 1185 964 HOH HOH . P 7 HOH A 86 1186 1022 HOH HOH . P 7 HOH A 87 1187 944 HOH HOH . P 7 HOH A 88 1188 979 HOH HOH . P 7 HOH A 89 1189 947 HOH HOH . P 7 HOH A 90 1190 960 HOH HOH . P 7 HOH A 91 1191 972 HOH HOH . P 7 HOH A 92 1192 1005 HOH HOH . P 7 HOH A 93 1193 1023 HOH HOH . P 7 HOH A 94 1194 983 HOH HOH . P 7 HOH A 95 1195 998 HOH HOH . P 7 HOH A 96 1196 966 HOH HOH . P 7 HOH A 97 1197 1018 HOH HOH . P 7 HOH A 98 1198 930 HOH HOH . P 7 HOH A 99 1199 990 HOH HOH . P 7 HOH A 100 1200 1002 HOH HOH . P 7 HOH A 101 1201 1004 HOH HOH . P 7 HOH A 102 1202 969 HOH HOH . P 7 HOH A 103 1203 963 HOH HOH . P 7 HOH A 104 1204 987 HOH HOH . Q 7 HOH B 1 1101 965 HOH HOH . Q 7 HOH B 2 1102 988 HOH HOH . Q 7 HOH B 3 1103 944 HOH HOH . Q 7 HOH B 4 1104 984 HOH HOH . Q 7 HOH B 5 1105 928 HOH HOH . Q 7 HOH B 6 1106 950 HOH HOH . Q 7 HOH B 7 1107 956 HOH HOH . Q 7 HOH B 8 1108 959 HOH HOH . Q 7 HOH B 9 1109 929 HOH HOH . Q 7 HOH B 10 1110 985 HOH HOH . Q 7 HOH B 11 1111 931 HOH HOH . Q 7 HOH B 12 1112 955 HOH HOH . Q 7 HOH B 13 1113 995 HOH HOH . Q 7 HOH B 14 1114 987 HOH HOH . Q 7 HOH B 15 1115 978 HOH HOH . Q 7 HOH B 16 1116 946 HOH HOH . Q 7 HOH B 17 1117 1001 HOH HOH . Q 7 HOH B 18 1118 980 HOH HOH . Q 7 HOH B 19 1119 972 HOH HOH . Q 7 HOH B 20 1120 996 HOH HOH . Q 7 HOH B 21 1121 935 HOH HOH . Q 7 HOH B 22 1122 983 HOH HOH . Q 7 HOH B 23 1123 969 HOH HOH . Q 7 HOH B 24 1124 941 HOH HOH . Q 7 HOH B 25 1125 924 HOH HOH . Q 7 HOH B 26 1126 971 HOH HOH . Q 7 HOH B 27 1127 949 HOH HOH . Q 7 HOH B 28 1128 933 HOH HOH . Q 7 HOH B 29 1129 999 HOH HOH . Q 7 HOH B 30 1130 932 HOH HOH . Q 7 HOH B 31 1131 982 HOH HOH . Q 7 HOH B 32 1132 947 HOH HOH . Q 7 HOH B 33 1133 927 HOH HOH . Q 7 HOH B 34 1134 940 HOH HOH . Q 7 HOH B 35 1135 964 HOH HOH . Q 7 HOH B 36 1136 990 HOH HOH . Q 7 HOH B 37 1137 986 HOH HOH . Q 7 HOH B 38 1138 997 HOH HOH . Q 7 HOH B 39 1139 938 HOH HOH . Q 7 HOH B 40 1140 930 HOH HOH . Q 7 HOH B 41 1141 945 HOH HOH . Q 7 HOH B 42 1142 952 HOH HOH . Q 7 HOH B 43 1143 943 HOH HOH . Q 7 HOH B 44 1144 942 HOH HOH . Q 7 HOH B 45 1145 953 HOH HOH . Q 7 HOH B 46 1146 926 HOH HOH . Q 7 HOH B 47 1147 994 HOH HOH . Q 7 HOH B 48 1148 934 HOH HOH . Q 7 HOH B 49 1149 925 HOH HOH . Q 7 HOH B 50 1150 1000 HOH HOH . Q 7 HOH B 51 1151 970 HOH HOH . Q 7 HOH B 52 1152 951 HOH HOH . Q 7 HOH B 53 1153 968 HOH HOH . Q 7 HOH B 54 1154 991 HOH HOH . Q 7 HOH B 55 1155 957 HOH HOH . Q 7 HOH B 56 1156 936 HOH HOH . Q 7 HOH B 57 1157 962 HOH HOH . Q 7 HOH B 58 1158 963 HOH HOH . Q 7 HOH B 59 1159 948 HOH HOH . Q 7 HOH B 60 1160 937 HOH HOH . Q 7 HOH B 61 1161 967 HOH HOH . Q 7 HOH B 62 1162 998 HOH HOH . Q 7 HOH B 63 1163 989 HOH HOH . Q 7 HOH B 64 1164 979 HOH HOH . Q 7 HOH B 65 1165 976 HOH HOH . Q 7 HOH B 66 1166 954 HOH HOH . Q 7 HOH B 67 1167 974 HOH HOH . Q 7 HOH B 68 1168 973 HOH HOH . Q 7 HOH B 69 1169 958 HOH HOH . Q 7 HOH B 70 1170 961 HOH HOH . Q 7 HOH B 71 1171 992 HOH HOH . Q 7 HOH B 72 1172 981 HOH HOH . Q 7 HOH B 73 1173 993 HOH HOH . Q 7 HOH B 74 1174 939 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GAI . . . E 2 94.582 -3.928 71.037 1 87.76 ? C GAI 1003 A 1 HETATM 2 N N1 GAI . . . E 2 93.566 -4.5 70.39 1 94.06 ? N1 GAI 1003 A 1 HETATM 3 N N2 GAI . . . E 2 95.257 -4.638 71.931 1 85.58 ? N2 GAI 1003 A 1 HETATM 4 N N3 GAI . . . E 2 94.895 -2.732 70.807 1 71.71 ? N3 GAI 1003 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #