data_6FF8 # _model_server_result.job_id KXc1ySqJZ72jptiMSvJipA _model_server_result.datetime_utc '2024-12-23 03:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ff8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 6FF8 # _exptl.entry_id 6FF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FF8 _cell.length_a 53.658 _cell.length_b 53.658 _cell.length_c 129.784 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 22 A THR 39 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A OG1 THR 40 A THR 57 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 C O1G GTP . A GTP 900 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 C O1B GTP . A GTP 900 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 D MG MG . A MG 901 1_555 G O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 D MG MG . A MG 901 1_555 G O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 B OG1 THR 22 B THR 39 1_555 F MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 B OG1 THR 40 B THR 57 1_555 F MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc9 E O3G GTP . B GTP 900 1_555 F MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc10 E O2B GTP . B GTP 900 1_555 F MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 F MG MG . B MG 901 1_555 H O HOH . B HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc12 F MG MG . B MG 901 1_555 H O HOH . B HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6FF8 _atom_sites.fract_transf_matrix[1][1] 0.018637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 900 900 GTP GTP . D 3 MG A 1 901 901 MG MG . E 2 GTP B 1 900 900 GTP GTP . F 3 MG B 1 901 901 MG MG . G 4 HOH A 1 1001 90 HOH HOH . G 4 HOH A 2 1002 86 HOH HOH . G 4 HOH A 3 1003 89 HOH HOH . G 4 HOH A 4 1004 21 HOH HOH . G 4 HOH A 5 1005 96 HOH HOH . G 4 HOH A 6 1006 6 HOH HOH . G 4 HOH A 7 1007 64 HOH HOH . G 4 HOH A 8 1008 57 HOH HOH . G 4 HOH A 9 1009 5 HOH HOH . G 4 HOH A 10 1010 7 HOH HOH . G 4 HOH A 11 1011 25 HOH HOH . G 4 HOH A 12 1012 29 HOH HOH . G 4 HOH A 13 1013 11 HOH HOH . G 4 HOH A 14 1014 37 HOH HOH . G 4 HOH A 15 1015 30 HOH HOH . G 4 HOH A 16 1016 39 HOH HOH . G 4 HOH A 17 1017 85 HOH HOH . G 4 HOH A 18 1018 12 HOH HOH . G 4 HOH A 19 1019 56 HOH HOH . G 4 HOH A 20 1020 53 HOH HOH . G 4 HOH A 21 1021 24 HOH HOH . G 4 HOH A 22 1022 22 HOH HOH . G 4 HOH A 23 1023 44 HOH HOH . G 4 HOH A 24 1024 68 HOH HOH . G 4 HOH A 25 1025 18 HOH HOH . G 4 HOH A 26 1026 9 HOH HOH . G 4 HOH A 27 1027 78 HOH HOH . H 4 HOH B 1 1001 34 HOH HOH . H 4 HOH B 2 1002 94 HOH HOH . H 4 HOH B 3 1003 95 HOH HOH . H 4 HOH B 4 1004 47 HOH HOH . H 4 HOH B 5 1005 19 HOH HOH . H 4 HOH B 6 1006 27 HOH HOH . H 4 HOH B 7 1007 76 HOH HOH . H 4 HOH B 8 1008 2 HOH HOH . H 4 HOH B 9 1009 8 HOH HOH . H 4 HOH B 10 1010 4 HOH HOH . H 4 HOH B 11 1011 16 HOH HOH . H 4 HOH B 12 1012 17 HOH HOH . H 4 HOH B 13 1013 93 HOH HOH . H 4 HOH B 14 1014 32 HOH HOH . H 4 HOH B 15 1015 15 HOH HOH . H 4 HOH B 16 1016 33 HOH HOH . H 4 HOH B 17 1017 60 HOH HOH . H 4 HOH B 18 1018 13 HOH HOH . H 4 HOH B 19 1019 41 HOH HOH . H 4 HOH B 20 1020 82 HOH HOH . H 4 HOH B 21 1021 63 HOH HOH . H 4 HOH B 22 1022 51 HOH HOH . H 4 HOH B 23 1023 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 2 -17.927 -26.929 18.052 1 28.23 ? PG GTP 900 A 1 HETATM 2 O O1G GTP . . . C 2 -16.677 -26.095 17.719 1 26.98 ? O1G GTP 900 A 1 HETATM 3 O O2G GTP . . . C 2 -19.241 -26.182 18.035 1 29.86 ? O2G GTP 900 A 1 HETATM 4 O O3G GTP . . . C 2 -17.721 -27.737 19.23 1 27.78 ? O3G GTP 900 A 1 HETATM 5 O O3B GTP . . . C 2 -17.971 -27.973 16.837 1 27.22 ? O3B GTP 900 A 1 HETATM 6 P PB GTP . . . C 2 -18.035 -27.692 15.293 1 26.24 ? PB GTP 900 A 1 HETATM 7 O O1B GTP . . . C 2 -17.244 -26.477 14.792 1 24.97 ? O1B GTP 900 A 1 HETATM 8 O O2B GTP . . . C 2 -19.482 -27.783 14.939 1 26.5 ? O2B GTP 900 A 1 HETATM 9 O O3A GTP . . . C 2 -17.333 -28.988 14.644 1 25.36 ? O3A GTP 900 A 1 HETATM 10 P PA GTP . . . C 2 -15.968 -29.131 13.76 1 26.28 ? PA GTP 900 A 1 HETATM 11 O O1A GTP . . . C 2 -16.038 -28.367 12.459 1 29.14 ? O1A GTP 900 A 1 HETATM 12 O O2A GTP . . . C 2 -14.906 -28.908 14.789 1 25.57 ? O2A GTP 900 A 1 HETATM 13 O O5' GTP . . . C 2 -16.06 -30.671 13.348 1 29.45 ? O5' GTP 900 A 1 HETATM 14 C C5' GTP . . . C 2 -16.279 -31.731 14.302 1 30.05 ? C5' GTP 900 A 1 HETATM 15 C C4' GTP . . . C 2 -15.622 -33.023 13.805 1 29.94 ? C4' GTP 900 A 1 HETATM 16 O O4' GTP . . . C 2 -16.326 -33.472 12.649 1 30.12 ? O4' GTP 900 A 1 HETATM 17 C C3' GTP . . . C 2 -14.172 -32.823 13.328 1 31.48 ? C3' GTP 900 A 1 HETATM 18 O O3' GTP . . . C 2 -13.321 -33.941 13.613 1 32.66 ? O3' GTP 900 A 1 HETATM 19 C C2' GTP . . . C 2 -14.244 -32.709 11.847 1 32.56 ? C2' GTP 900 A 1 HETATM 20 O O2' GTP . . . C 2 -13.068 -33.151 11.168 1 35.17 ? O2' GTP 900 A 1 HETATM 21 C C1' GTP . . . C 2 -15.445 -33.577 11.535 1 30.79 ? C1' GTP 900 A 1 HETATM 22 N N9 GTP . . . C 2 -16.146 -33.107 10.348 1 30.36 ? N9 GTP 900 A 1 HETATM 23 C C8 GTP . . . C 2 -16.651 -31.862 10.125 1 29.65 ? C8 GTP 900 A 1 HETATM 24 N N7 GTP . . . C 2 -17.261 -31.811 8.933 1 29.4 ? N7 GTP 900 A 1 HETATM 25 C C5 GTP . . . C 2 -17.18 -33.042 8.378 1 29.63 ? C5 GTP 900 A 1 HETATM 26 C C6 GTP . . . C 2 -17.633 -33.707 7.149 1 30.64 ? C6 GTP 900 A 1 HETATM 27 O O6 GTP . . . C 2 -18.241 -33.142 6.223 1 29.46 ? O6 GTP 900 A 1 HETATM 28 N N1 GTP . . . C 2 -17.323 -35.004 6.982 1 33.48 ? N1 GTP 900 A 1 HETATM 29 C C2 GTP . . . C 2 -16.642 -35.714 7.911 1 32.59 ? C2 GTP 900 A 1 HETATM 30 N N2 GTP . . . C 2 -16.384 -37.01 7.685 1 31.97 ? N2 GTP 900 A 1 HETATM 31 N N3 GTP . . . C 2 -16.225 -35.185 9.067 1 31.32 ? N3 GTP 900 A 1 HETATM 32 C C4 GTP . . . C 2 -16.453 -33.885 9.334 1 30.47 ? C4 GTP 900 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #