data_6FFA
#
_model_server_result.job_id            -vPi5Bljb6nNb72VC2gOFA 
_model_server_result.datetime_utc      '2024-11-21 18:14:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ffa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6FFA 
#
_exptl.entry_id    6FFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.81 
_cell.angle_gamma         90 
_cell.entry_id            6FFA 
_cell.length_a            114.188 
_cell.length_b            40.352 
_cell.length_c            58.052 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 23 A CYS 51 1_555 B C2 AYE 78 B AYE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? 
covale ? covale2 B C LEU 77 B LEU 154 1_555 B N1 AYE 78 B AYE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 139 n n 
C1 C2 GOL sing 140 n n 
C1 H11 GOL sing 141 n n 
C1 H12 GOL sing 142 n n 
O1 HO1 GOL sing 143 n n 
C2 O2 GOL sing 144 n n 
C2 C3 GOL sing 145 n n 
C2 H2 GOL sing 146 n n 
O2 HO2 GOL sing 147 n n 
C3 O3 GOL sing 148 n n 
C3 H31 GOL sing 149 n n 
C3 H32 GOL sing 150 n n 
O3 HO3 GOL sing 151 n n 
#
_atom_sites.entry_id                     6FFA 
_atom_sites.fract_transf_matrix[1][1]    0.008757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000278 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024782 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 201 3 GOL GOL . 
D 3 GOL A 1 202 5 GOL GOL . 
E 3 GOL A 1 203 6 GOL GOL . 
F 3 GOL A 1 204 7 GOL GOL . 
G 4 SO4 A 1 205 1 SO4 SO4 . 
H 4 SO4 A 1 206 2 SO4 SO4 . 
I 4 SO4 A 1 207 3 SO4 SO4 . 
J 3 GOL B 1 201 8 GOL GOL . 
K 5 HOH A 1 301 159 HOH HOH . 
K 5 HOH A 2 302 202 HOH HOH . 
K 5 HOH A 3 303 143 HOH HOH . 
K 5 HOH A 4 304 109 HOH HOH . 
K 5 HOH A 5 305 203 HOH HOH . 
K 5 HOH A 6 306 104 HOH HOH . 
K 5 HOH A 7 307 194 HOH HOH . 
K 5 HOH A 8 308 201 HOH HOH . 
K 5 HOH A 9 309 92 HOH HOH . 
K 5 HOH A 10 310 147 HOH HOH . 
K 5 HOH A 11 311 154 HOH HOH . 
K 5 HOH A 12 312 88 HOH HOH . 
K 5 HOH A 13 313 182 HOH HOH . 
K 5 HOH A 14 314 81 HOH HOH . 
K 5 HOH A 15 315 171 HOH HOH . 
K 5 HOH A 16 316 162 HOH HOH . 
K 5 HOH A 17 317 85 HOH HOH . 
K 5 HOH A 18 318 55 HOH HOH . 
K 5 HOH A 19 319 108 HOH HOH . 
K 5 HOH A 20 320 74 HOH HOH . 
K 5 HOH A 21 321 52 HOH HOH . 
K 5 HOH A 22 322 170 HOH HOH . 
K 5 HOH A 23 323 145 HOH HOH . 
K 5 HOH A 24 324 107 HOH HOH . 
K 5 HOH A 25 325 99 HOH HOH . 
K 5 HOH A 26 326 189 HOH HOH . 
K 5 HOH A 27 327 1 HOH HOH . 
K 5 HOH A 28 328 132 HOH HOH . 
K 5 HOH A 29 329 41 HOH HOH . 
K 5 HOH A 30 330 25 HOH HOH . 
K 5 HOH A 31 331 149 HOH HOH . 
K 5 HOH A 32 332 163 HOH HOH . 
K 5 HOH A 33 333 86 HOH HOH . 
K 5 HOH A 34 334 123 HOH HOH . 
K 5 HOH A 35 335 165 HOH HOH . 
K 5 HOH A 36 336 87 HOH HOH . 
K 5 HOH A 37 337 29 HOH HOH . 
K 5 HOH A 38 339 15 HOH HOH . 
K 5 HOH A 39 340 146 HOH HOH . 
K 5 HOH A 40 341 185 HOH HOH . 
K 5 HOH A 41 342 42 HOH HOH . 
K 5 HOH A 42 343 112 HOH HOH . 
K 5 HOH A 43 344 73 HOH HOH . 
K 5 HOH A 44 345 2 HOH HOH . 
K 5 HOH A 45 346 11 HOH HOH . 
K 5 HOH A 46 347 200 HOH HOH . 
K 5 HOH A 47 348 70 HOH HOH . 
K 5 HOH A 48 349 116 HOH HOH . 
K 5 HOH A 49 350 45 HOH HOH . 
K 5 HOH A 50 351 142 HOH HOH . 
K 5 HOH A 51 352 30 HOH HOH . 
K 5 HOH A 52 353 17 HOH HOH . 
K 5 HOH A 53 354 47 HOH HOH . 
K 5 HOH A 54 355 72 HOH HOH . 
K 5 HOH A 55 356 153 HOH HOH . 
K 5 HOH A 56 357 169 HOH HOH . 
K 5 HOH A 57 358 161 HOH HOH . 
K 5 HOH A 58 359 6 HOH HOH . 
K 5 HOH A 59 360 75 HOH HOH . 
K 5 HOH A 60 361 8 HOH HOH . 
K 5 HOH A 61 362 57 HOH HOH . 
K 5 HOH A 62 363 175 HOH HOH . 
K 5 HOH A 63 364 80 HOH HOH . 
K 5 HOH A 64 365 89 HOH HOH . 
K 5 HOH A 65 366 21 HOH HOH . 
K 5 HOH A 66 367 114 HOH HOH . 
K 5 HOH A 67 368 82 HOH HOH . 
K 5 HOH A 68 369 155 HOH HOH . 
K 5 HOH A 69 370 141 HOH HOH . 
K 5 HOH A 70 371 97 HOH HOH . 
K 5 HOH A 71 372 84 HOH HOH . 
K 5 HOH A 72 373 77 HOH HOH . 
K 5 HOH A 73 374 166 HOH HOH . 
K 5 HOH A 74 375 61 HOH HOH . 
K 5 HOH A 75 376 212 HOH HOH . 
K 5 HOH A 76 377 101 HOH HOH . 
K 5 HOH A 77 378 140 HOH HOH . 
K 5 HOH A 78 379 56 HOH HOH . 
K 5 HOH A 79 380 16 HOH HOH . 
K 5 HOH A 80 381 158 HOH HOH . 
K 5 HOH A 81 382 5 HOH HOH . 
K 5 HOH A 82 383 197 HOH HOH . 
K 5 HOH A 83 384 4 HOH HOH . 
K 5 HOH A 84 385 139 HOH HOH . 
K 5 HOH A 85 386 27 HOH HOH . 
K 5 HOH A 86 387 207 HOH HOH . 
K 5 HOH A 87 388 28 HOH HOH . 
K 5 HOH A 88 389 184 HOH HOH . 
K 5 HOH A 89 390 31 HOH HOH . 
K 5 HOH A 90 391 63 HOH HOH . 
K 5 HOH A 91 392 71 HOH HOH . 
K 5 HOH A 92 393 78 HOH HOH . 
K 5 HOH A 93 394 3 HOH HOH . 
K 5 HOH A 94 395 151 HOH HOH . 
K 5 HOH A 95 396 187 HOH HOH . 
K 5 HOH A 96 397 7 HOH HOH . 
K 5 HOH A 97 398 160 HOH HOH . 
K 5 HOH A 98 399 103 HOH HOH . 
K 5 HOH A 99 400 46 HOH HOH . 
K 5 HOH A 100 401 96 HOH HOH . 
K 5 HOH A 101 402 148 HOH HOH . 
K 5 HOH A 102 403 102 HOH HOH . 
K 5 HOH A 103 404 18 HOH HOH . 
K 5 HOH A 104 405 164 HOH HOH . 
K 5 HOH A 105 406 22 HOH HOH . 
K 5 HOH A 106 407 183 HOH HOH . 
K 5 HOH A 107 408 128 HOH HOH . 
K 5 HOH A 108 409 180 HOH HOH . 
K 5 HOH A 109 410 62 HOH HOH . 
K 5 HOH A 110 411 110 HOH HOH . 
K 5 HOH A 111 412 98 HOH HOH . 
K 5 HOH A 112 413 119 HOH HOH . 
K 5 HOH A 113 414 188 HOH HOH . 
K 5 HOH A 114 415 121 HOH HOH . 
K 5 HOH A 115 416 115 HOH HOH . 
K 5 HOH A 116 417 204 HOH HOH . 
K 5 HOH A 117 418 136 HOH HOH . 
K 5 HOH A 118 419 168 HOH HOH . 
K 5 HOH A 119 420 44 HOH HOH . 
K 5 HOH A 120 421 144 HOH HOH . 
K 5 HOH A 121 422 156 HOH HOH . 
K 5 HOH A 122 423 181 HOH HOH . 
K 5 HOH A 123 424 40 HOH HOH . 
K 5 HOH A 124 425 35 HOH HOH . 
K 5 HOH A 125 426 190 HOH HOH . 
K 5 HOH A 126 427 91 HOH HOH . 
K 5 HOH A 127 428 48 HOH HOH . 
K 5 HOH A 128 429 198 HOH HOH . 
K 5 HOH A 129 430 20 HOH HOH . 
K 5 HOH A 130 431 124 HOH HOH . 
K 5 HOH A 131 432 186 HOH HOH . 
K 5 HOH A 132 433 105 HOH HOH . 
K 5 HOH A 133 434 100 HOH HOH . 
K 5 HOH A 134 435 152 HOH HOH . 
K 5 HOH A 135 436 192 HOH HOH . 
K 5 HOH A 136 437 125 HOH HOH . 
K 5 HOH A 137 438 172 HOH HOH . 
L 5 HOH B 1 301 178 HOH HOH . 
L 5 HOH B 2 302 126 HOH HOH . 
L 5 HOH B 3 303 58 HOH HOH . 
L 5 HOH B 4 304 117 HOH HOH . 
L 5 HOH B 5 305 38 HOH HOH . 
L 5 HOH B 6 306 179 HOH HOH . 
L 5 HOH B 7 307 122 HOH HOH . 
L 5 HOH B 8 308 59 HOH HOH . 
L 5 HOH B 9 309 113 HOH HOH . 
L 5 HOH B 10 310 138 HOH HOH . 
L 5 HOH B 11 311 53 HOH HOH . 
L 5 HOH B 12 312 12 HOH HOH . 
L 5 HOH B 13 313 54 HOH HOH . 
L 5 HOH B 14 314 79 HOH HOH . 
L 5 HOH B 15 315 191 HOH HOH . 
L 5 HOH B 16 316 118 HOH HOH . 
L 5 HOH B 17 317 50 HOH HOH . 
L 5 HOH B 18 318 195 HOH HOH . 
L 5 HOH B 19 319 196 HOH HOH . 
L 5 HOH B 20 320 60 HOH HOH . 
L 5 HOH B 21 321 211 HOH HOH . 
L 5 HOH B 22 322 67 HOH HOH . 
L 5 HOH B 23 323 9 HOH HOH . 
L 5 HOH B 24 324 66 HOH HOH . 
L 5 HOH B 25 325 14 HOH HOH . 
L 5 HOH B 26 326 32 HOH HOH . 
L 5 HOH B 27 327 129 HOH HOH . 
L 5 HOH B 28 328 43 HOH HOH . 
L 5 HOH B 29 329 13 HOH HOH . 
L 5 HOH B 30 330 51 HOH HOH . 
L 5 HOH B 31 331 19 HOH HOH . 
L 5 HOH B 32 332 23 HOH HOH . 
L 5 HOH B 33 333 37 HOH HOH . 
L 5 HOH B 34 334 39 HOH HOH . 
L 5 HOH B 35 335 49 HOH HOH . 
L 5 HOH B 36 336 68 HOH HOH . 
L 5 HOH B 37 337 135 HOH HOH . 
L 5 HOH B 38 338 93 HOH HOH . 
L 5 HOH B 39 339 36 HOH HOH . 
L 5 HOH B 40 340 26 HOH HOH . 
L 5 HOH B 41 341 177 HOH HOH . 
L 5 HOH B 42 342 134 HOH HOH . 
L 5 HOH B 43 343 106 HOH HOH . 
L 5 HOH B 44 344 10 HOH HOH . 
L 5 HOH B 45 345 69 HOH HOH . 
L 5 HOH B 46 346 157 HOH HOH . 
L 5 HOH B 47 347 133 HOH HOH . 
L 5 HOH B 48 348 210 HOH HOH . 
L 5 HOH B 49 349 137 HOH HOH . 
L 5 HOH B 50 350 24 HOH HOH . 
L 5 HOH B 51 351 130 HOH HOH . 
L 5 HOH B 52 352 64 HOH HOH . 
L 5 HOH B 53 353 206 HOH HOH . 
L 5 HOH B 54 354 65 HOH HOH . 
L 5 HOH B 55 355 94 HOH HOH . 
L 5 HOH B 56 356 95 HOH HOH . 
L 5 HOH B 57 357 34 HOH HOH . 
L 5 HOH B 58 358 120 HOH HOH . 
L 5 HOH B 59 359 205 HOH HOH . 
L 5 HOH B 60 360 76 HOH HOH . 
L 5 HOH B 61 361 213 HOH HOH . 
L 5 HOH B 62 362 33 HOH HOH . 
L 5 HOH B 63 363 127 HOH HOH . 
L 5 HOH B 64 364 193 HOH HOH . 
L 5 HOH B 65 365 173 HOH HOH . 
L 5 HOH B 66 366 174 HOH HOH . 
L 5 HOH B 67 367 208 HOH HOH . 
L 5 HOH B 68 368 90 HOH HOH . 
L 5 HOH B 69 369 83 HOH HOH . 
L 5 HOH B 70 370 209 HOH HOH . 
L 5 HOH B 71 371 150 HOH HOH . 
L 5 HOH B 72 372 111 HOH HOH . 
L 5 HOH B 73 373 167 HOH HOH . 
L 5 HOH B 74 374 131 HOH HOH . 
L 5 HOH B 75 375 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 5.972 -45.351 78.48 1 32.98 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . D 3 4.863 -44.513 78.812 1 23 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . D 3 5.446 -46.528 77.671 1 41.08 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . D 3 4.24 -47.01 78.277 1 40.26 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . D 3 6.532 -47.595 77.565 1 43.58 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . D 3 6.656 -48.36 78.753 1 50.08 ? O3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#