data_6FFA # _model_server_result.job_id QaxHxgcmTWYTU429TFYGww _model_server_result.datetime_utc '2024-11-05 10:53:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ffa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6FFA # _exptl.entry_id 6FFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.81 _cell.angle_gamma 90 _cell.entry_id 6FFA _cell.length_a 114.188 _cell.length_b 40.352 _cell.length_c 58.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 23 A CYS 51 1_555 B C2 AYE 78 B AYE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? covale ? covale2 B C LEU 77 B LEU 154 1_555 B N1 AYE 78 B AYE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 139 n n C1 C2 GOL sing 140 n n C1 H11 GOL sing 141 n n C1 H12 GOL sing 142 n n O1 HO1 GOL sing 143 n n C2 O2 GOL sing 144 n n C2 C3 GOL sing 145 n n C2 H2 GOL sing 146 n n O2 HO2 GOL sing 147 n n C3 O3 GOL sing 148 n n C3 H31 GOL sing 149 n n C3 H32 GOL sing 150 n n O3 HO3 GOL sing 151 n n # _atom_sites.entry_id 6FFA _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 3 GOL GOL . D 3 GOL A 1 202 5 GOL GOL . E 3 GOL A 1 203 6 GOL GOL . F 3 GOL A 1 204 7 GOL GOL . G 4 SO4 A 1 205 1 SO4 SO4 . H 4 SO4 A 1 206 2 SO4 SO4 . I 4 SO4 A 1 207 3 SO4 SO4 . J 3 GOL B 1 201 8 GOL GOL . K 5 HOH A 1 301 159 HOH HOH . K 5 HOH A 2 302 202 HOH HOH . K 5 HOH A 3 303 143 HOH HOH . K 5 HOH A 4 304 109 HOH HOH . K 5 HOH A 5 305 203 HOH HOH . K 5 HOH A 6 306 104 HOH HOH . K 5 HOH A 7 307 194 HOH HOH . K 5 HOH A 8 308 201 HOH HOH . K 5 HOH A 9 309 92 HOH HOH . K 5 HOH A 10 310 147 HOH HOH . K 5 HOH A 11 311 154 HOH HOH . K 5 HOH A 12 312 88 HOH HOH . K 5 HOH A 13 313 182 HOH HOH . K 5 HOH A 14 314 81 HOH HOH . K 5 HOH A 15 315 171 HOH HOH . K 5 HOH A 16 316 162 HOH HOH . K 5 HOH A 17 317 85 HOH HOH . K 5 HOH A 18 318 55 HOH HOH . K 5 HOH A 19 319 108 HOH HOH . K 5 HOH A 20 320 74 HOH HOH . K 5 HOH A 21 321 52 HOH HOH . K 5 HOH A 22 322 170 HOH HOH . K 5 HOH A 23 323 145 HOH HOH . K 5 HOH A 24 324 107 HOH HOH . K 5 HOH A 25 325 99 HOH HOH . K 5 HOH A 26 326 189 HOH HOH . K 5 HOH A 27 327 1 HOH HOH . K 5 HOH A 28 328 132 HOH HOH . K 5 HOH A 29 329 41 HOH HOH . K 5 HOH A 30 330 25 HOH HOH . K 5 HOH A 31 331 149 HOH HOH . K 5 HOH A 32 332 163 HOH HOH . K 5 HOH A 33 333 86 HOH HOH . K 5 HOH A 34 334 123 HOH HOH . K 5 HOH A 35 335 165 HOH HOH . K 5 HOH A 36 336 87 HOH HOH . K 5 HOH A 37 337 29 HOH HOH . K 5 HOH A 38 339 15 HOH HOH . K 5 HOH A 39 340 146 HOH HOH . K 5 HOH A 40 341 185 HOH HOH . K 5 HOH A 41 342 42 HOH HOH . K 5 HOH A 42 343 112 HOH HOH . K 5 HOH A 43 344 73 HOH HOH . K 5 HOH A 44 345 2 HOH HOH . K 5 HOH A 45 346 11 HOH HOH . K 5 HOH A 46 347 200 HOH HOH . K 5 HOH A 47 348 70 HOH HOH . K 5 HOH A 48 349 116 HOH HOH . K 5 HOH A 49 350 45 HOH HOH . K 5 HOH A 50 351 142 HOH HOH . K 5 HOH A 51 352 30 HOH HOH . K 5 HOH A 52 353 17 HOH HOH . K 5 HOH A 53 354 47 HOH HOH . K 5 HOH A 54 355 72 HOH HOH . K 5 HOH A 55 356 153 HOH HOH . K 5 HOH A 56 357 169 HOH HOH . K 5 HOH A 57 358 161 HOH HOH . K 5 HOH A 58 359 6 HOH HOH . K 5 HOH A 59 360 75 HOH HOH . K 5 HOH A 60 361 8 HOH HOH . K 5 HOH A 61 362 57 HOH HOH . K 5 HOH A 62 363 175 HOH HOH . K 5 HOH A 63 364 80 HOH HOH . K 5 HOH A 64 365 89 HOH HOH . K 5 HOH A 65 366 21 HOH HOH . K 5 HOH A 66 367 114 HOH HOH . K 5 HOH A 67 368 82 HOH HOH . K 5 HOH A 68 369 155 HOH HOH . K 5 HOH A 69 370 141 HOH HOH . K 5 HOH A 70 371 97 HOH HOH . K 5 HOH A 71 372 84 HOH HOH . K 5 HOH A 72 373 77 HOH HOH . K 5 HOH A 73 374 166 HOH HOH . K 5 HOH A 74 375 61 HOH HOH . K 5 HOH A 75 376 212 HOH HOH . K 5 HOH A 76 377 101 HOH HOH . K 5 HOH A 77 378 140 HOH HOH . K 5 HOH A 78 379 56 HOH HOH . K 5 HOH A 79 380 16 HOH HOH . K 5 HOH A 80 381 158 HOH HOH . K 5 HOH A 81 382 5 HOH HOH . K 5 HOH A 82 383 197 HOH HOH . K 5 HOH A 83 384 4 HOH HOH . K 5 HOH A 84 385 139 HOH HOH . K 5 HOH A 85 386 27 HOH HOH . K 5 HOH A 86 387 207 HOH HOH . K 5 HOH A 87 388 28 HOH HOH . K 5 HOH A 88 389 184 HOH HOH . K 5 HOH A 89 390 31 HOH HOH . K 5 HOH A 90 391 63 HOH HOH . K 5 HOH A 91 392 71 HOH HOH . K 5 HOH A 92 393 78 HOH HOH . K 5 HOH A 93 394 3 HOH HOH . K 5 HOH A 94 395 151 HOH HOH . K 5 HOH A 95 396 187 HOH HOH . K 5 HOH A 96 397 7 HOH HOH . K 5 HOH A 97 398 160 HOH HOH . K 5 HOH A 98 399 103 HOH HOH . K 5 HOH A 99 400 46 HOH HOH . K 5 HOH A 100 401 96 HOH HOH . K 5 HOH A 101 402 148 HOH HOH . K 5 HOH A 102 403 102 HOH HOH . K 5 HOH A 103 404 18 HOH HOH . K 5 HOH A 104 405 164 HOH HOH . K 5 HOH A 105 406 22 HOH HOH . K 5 HOH A 106 407 183 HOH HOH . K 5 HOH A 107 408 128 HOH HOH . K 5 HOH A 108 409 180 HOH HOH . K 5 HOH A 109 410 62 HOH HOH . K 5 HOH A 110 411 110 HOH HOH . K 5 HOH A 111 412 98 HOH HOH . K 5 HOH A 112 413 119 HOH HOH . K 5 HOH A 113 414 188 HOH HOH . K 5 HOH A 114 415 121 HOH HOH . K 5 HOH A 115 416 115 HOH HOH . K 5 HOH A 116 417 204 HOH HOH . K 5 HOH A 117 418 136 HOH HOH . K 5 HOH A 118 419 168 HOH HOH . K 5 HOH A 119 420 44 HOH HOH . K 5 HOH A 120 421 144 HOH HOH . K 5 HOH A 121 422 156 HOH HOH . K 5 HOH A 122 423 181 HOH HOH . K 5 HOH A 123 424 40 HOH HOH . K 5 HOH A 124 425 35 HOH HOH . K 5 HOH A 125 426 190 HOH HOH . K 5 HOH A 126 427 91 HOH HOH . K 5 HOH A 127 428 48 HOH HOH . K 5 HOH A 128 429 198 HOH HOH . K 5 HOH A 129 430 20 HOH HOH . K 5 HOH A 130 431 124 HOH HOH . K 5 HOH A 131 432 186 HOH HOH . K 5 HOH A 132 433 105 HOH HOH . K 5 HOH A 133 434 100 HOH HOH . K 5 HOH A 134 435 152 HOH HOH . K 5 HOH A 135 436 192 HOH HOH . K 5 HOH A 136 437 125 HOH HOH . K 5 HOH A 137 438 172 HOH HOH . L 5 HOH B 1 301 178 HOH HOH . L 5 HOH B 2 302 126 HOH HOH . L 5 HOH B 3 303 58 HOH HOH . L 5 HOH B 4 304 117 HOH HOH . L 5 HOH B 5 305 38 HOH HOH . L 5 HOH B 6 306 179 HOH HOH . L 5 HOH B 7 307 122 HOH HOH . L 5 HOH B 8 308 59 HOH HOH . L 5 HOH B 9 309 113 HOH HOH . L 5 HOH B 10 310 138 HOH HOH . L 5 HOH B 11 311 53 HOH HOH . L 5 HOH B 12 312 12 HOH HOH . L 5 HOH B 13 313 54 HOH HOH . L 5 HOH B 14 314 79 HOH HOH . L 5 HOH B 15 315 191 HOH HOH . L 5 HOH B 16 316 118 HOH HOH . L 5 HOH B 17 317 50 HOH HOH . L 5 HOH B 18 318 195 HOH HOH . L 5 HOH B 19 319 196 HOH HOH . L 5 HOH B 20 320 60 HOH HOH . L 5 HOH B 21 321 211 HOH HOH . L 5 HOH B 22 322 67 HOH HOH . L 5 HOH B 23 323 9 HOH HOH . L 5 HOH B 24 324 66 HOH HOH . L 5 HOH B 25 325 14 HOH HOH . L 5 HOH B 26 326 32 HOH HOH . L 5 HOH B 27 327 129 HOH HOH . L 5 HOH B 28 328 43 HOH HOH . L 5 HOH B 29 329 13 HOH HOH . L 5 HOH B 30 330 51 HOH HOH . L 5 HOH B 31 331 19 HOH HOH . L 5 HOH B 32 332 23 HOH HOH . L 5 HOH B 33 333 37 HOH HOH . L 5 HOH B 34 334 39 HOH HOH . L 5 HOH B 35 335 49 HOH HOH . L 5 HOH B 36 336 68 HOH HOH . L 5 HOH B 37 337 135 HOH HOH . L 5 HOH B 38 338 93 HOH HOH . L 5 HOH B 39 339 36 HOH HOH . L 5 HOH B 40 340 26 HOH HOH . L 5 HOH B 41 341 177 HOH HOH . L 5 HOH B 42 342 134 HOH HOH . L 5 HOH B 43 343 106 HOH HOH . L 5 HOH B 44 344 10 HOH HOH . L 5 HOH B 45 345 69 HOH HOH . L 5 HOH B 46 346 157 HOH HOH . L 5 HOH B 47 347 133 HOH HOH . L 5 HOH B 48 348 210 HOH HOH . L 5 HOH B 49 349 137 HOH HOH . L 5 HOH B 50 350 24 HOH HOH . L 5 HOH B 51 351 130 HOH HOH . L 5 HOH B 52 352 64 HOH HOH . L 5 HOH B 53 353 206 HOH HOH . L 5 HOH B 54 354 65 HOH HOH . L 5 HOH B 55 355 94 HOH HOH . L 5 HOH B 56 356 95 HOH HOH . L 5 HOH B 57 357 34 HOH HOH . L 5 HOH B 58 358 120 HOH HOH . L 5 HOH B 59 359 205 HOH HOH . L 5 HOH B 60 360 76 HOH HOH . L 5 HOH B 61 361 213 HOH HOH . L 5 HOH B 62 362 33 HOH HOH . L 5 HOH B 63 363 127 HOH HOH . L 5 HOH B 64 364 193 HOH HOH . L 5 HOH B 65 365 173 HOH HOH . L 5 HOH B 66 366 174 HOH HOH . L 5 HOH B 67 367 208 HOH HOH . L 5 HOH B 68 368 90 HOH HOH . L 5 HOH B 69 369 83 HOH HOH . L 5 HOH B 70 370 209 HOH HOH . L 5 HOH B 71 371 150 HOH HOH . L 5 HOH B 72 372 111 HOH HOH . L 5 HOH B 73 373 167 HOH HOH . L 5 HOH B 74 374 131 HOH HOH . L 5 HOH B 75 375 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 16.491 -24.663 87.828 1 64.18 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . F 3 16.376 -24.215 86.494 1 46.45 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . F 3 17.875 -25.156 88.226 1 72.47 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . F 3 18.67 -24.027 88.501 1 77.91 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . F 3 17.764 -26.018 89.484 1 76.46 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . F 3 18.974 -26.713 89.686 1 83.69 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #