data_6FFB # _model_server_result.job_id FA_k0K84RtBjWeZujPpV-w _model_server_result.datetime_utc '2024-11-15 09:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ffb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6FFB # _exptl.entry_id 6FFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FFB _cell.length_a 91.645 _cell.length_b 91.645 _cell.length_c 132.555 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.645 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.645 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 C NA NA . A NA 302 1_555 F O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FFB _atom_sites.fract_transf_matrix[1][1] 0.010912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 NA A 1 302 1 NA NA . D 4 BGC A 1 303 1 BGC XXX . E 5 F45 A 1 304 1 F45 F45 . F 6 HOH A 1 401 941 HOH HOH . F 6 HOH A 2 402 877 HOH HOH . F 6 HOH A 3 403 826 HOH HOH . F 6 HOH A 4 404 808 HOH HOH . F 6 HOH A 5 405 928 HOH HOH . F 6 HOH A 6 406 804 HOH HOH . F 6 HOH A 7 407 948 HOH HOH . F 6 HOH A 8 408 723 HOH HOH . F 6 HOH A 9 409 918 HOH HOH . F 6 HOH A 10 410 938 HOH HOH . F 6 HOH A 11 411 803 HOH HOH . F 6 HOH A 12 412 423 HOH HOH . F 6 HOH A 13 413 816 HOH HOH . F 6 HOH A 14 414 799 HOH HOH . F 6 HOH A 15 415 742 HOH HOH . F 6 HOH A 16 416 919 HOH HOH . F 6 HOH A 17 417 875 HOH HOH . F 6 HOH A 18 418 405 HOH HOH . F 6 HOH A 19 419 407 HOH HOH . F 6 HOH A 20 420 937 HOH HOH . F 6 HOH A 21 421 952 HOH HOH . F 6 HOH A 22 422 420 HOH HOH . F 6 HOH A 23 423 821 HOH HOH . F 6 HOH A 24 424 752 HOH HOH . F 6 HOH A 25 425 446 HOH HOH . F 6 HOH A 26 426 437 HOH HOH . F 6 HOH A 27 427 793 HOH HOH . F 6 HOH A 28 428 932 HOH HOH . F 6 HOH A 29 429 795 HOH HOH . F 6 HOH A 30 430 453 HOH HOH . F 6 HOH A 31 431 917 HOH HOH . F 6 HOH A 32 432 900 HOH HOH . F 6 HOH A 33 433 882 HOH HOH . F 6 HOH A 34 434 792 HOH HOH . F 6 HOH A 35 435 956 HOH HOH . F 6 HOH A 36 436 784 HOH HOH . F 6 HOH A 37 437 425 HOH HOH . F 6 HOH A 38 438 443 HOH HOH . F 6 HOH A 39 439 914 HOH HOH . F 6 HOH A 40 440 432 HOH HOH . F 6 HOH A 41 441 755 HOH HOH . F 6 HOH A 42 442 759 HOH HOH . F 6 HOH A 43 443 758 HOH HOH . F 6 HOH A 44 444 791 HOH HOH . F 6 HOH A 45 445 813 HOH HOH . F 6 HOH A 46 446 416 HOH HOH . F 6 HOH A 47 447 847 HOH HOH . F 6 HOH A 48 448 923 HOH HOH . F 6 HOH A 49 449 779 HOH HOH . F 6 HOH A 50 450 635 HOH HOH . F 6 HOH A 51 451 435 HOH HOH . F 6 HOH A 52 452 884 HOH HOH . F 6 HOH A 53 453 754 HOH HOH . F 6 HOH A 54 454 841 HOH HOH . F 6 HOH A 55 455 772 HOH HOH . F 6 HOH A 56 456 805 HOH HOH . F 6 HOH A 57 457 463 HOH HOH . F 6 HOH A 58 458 459 HOH HOH . F 6 HOH A 59 459 438 HOH HOH . F 6 HOH A 60 460 745 HOH HOH . F 6 HOH A 61 461 595 HOH HOH . F 6 HOH A 62 462 434 HOH HOH . F 6 HOH A 63 463 489 HOH HOH . F 6 HOH A 64 464 951 HOH HOH . F 6 HOH A 65 465 872 HOH HOH . F 6 HOH A 66 466 481 HOH HOH . F 6 HOH A 67 467 440 HOH HOH . F 6 HOH A 68 468 454 HOH HOH . F 6 HOH A 69 469 429 HOH HOH . F 6 HOH A 70 470 781 HOH HOH . F 6 HOH A 71 471 790 HOH HOH . F 6 HOH A 72 472 465 HOH HOH . F 6 HOH A 73 473 445 HOH HOH . F 6 HOH A 74 474 903 HOH HOH . F 6 HOH A 75 475 901 HOH HOH . F 6 HOH A 76 476 460 HOH HOH . F 6 HOH A 77 477 509 HOH HOH . F 6 HOH A 78 478 880 HOH HOH . F 6 HOH A 79 479 477 HOH HOH . F 6 HOH A 80 480 848 HOH HOH . F 6 HOH A 81 481 943 HOH HOH . F 6 HOH A 82 482 771 HOH HOH . F 6 HOH A 83 483 940 HOH HOH . F 6 HOH A 84 484 913 HOH HOH . F 6 HOH A 85 485 827 HOH HOH . F 6 HOH A 86 486 455 HOH HOH . F 6 HOH A 87 487 845 HOH HOH . F 6 HOH A 88 488 912 HOH HOH . F 6 HOH A 89 489 466 HOH HOH . F 6 HOH A 90 490 450 HOH HOH . F 6 HOH A 91 491 823 HOH HOH . F 6 HOH A 92 492 876 HOH HOH . F 6 HOH A 93 493 922 HOH HOH . F 6 HOH A 94 494 479 HOH HOH . F 6 HOH A 95 495 449 HOH HOH . F 6 HOH A 96 496 874 HOH HOH . F 6 HOH A 97 497 846 HOH HOH . F 6 HOH A 98 498 717 HOH HOH . F 6 HOH A 99 499 467 HOH HOH . F 6 HOH A 100 500 831 HOH HOH . F 6 HOH A 101 501 822 HOH HOH . F 6 HOH A 102 502 475 HOH HOH . F 6 HOH A 103 503 486 HOH HOH . F 6 HOH A 104 504 789 HOH HOH . F 6 HOH A 105 505 833 HOH HOH . F 6 HOH A 106 506 500 HOH HOH . F 6 HOH A 107 507 942 HOH HOH . F 6 HOH A 108 508 519 HOH HOH . F 6 HOH A 109 509 934 HOH HOH . F 6 HOH A 110 510 794 HOH HOH . F 6 HOH A 111 511 780 HOH HOH . F 6 HOH A 112 512 915 HOH HOH . F 6 HOH A 113 513 514 HOH HOH . F 6 HOH A 114 514 492 HOH HOH . F 6 HOH A 115 515 522 HOH HOH . F 6 HOH A 116 516 515 HOH HOH . F 6 HOH A 117 517 502 HOH HOH . F 6 HOH A 118 518 946 HOH HOH . F 6 HOH A 119 519 484 HOH HOH . F 6 HOH A 120 520 920 HOH HOH . F 6 HOH A 121 521 718 HOH HOH . F 6 HOH A 122 522 807 HOH HOH . F 6 HOH A 123 523 892 HOH HOH . F 6 HOH A 124 524 750 HOH HOH . F 6 HOH A 125 525 725 HOH HOH . F 6 HOH A 126 526 510 HOH HOH . F 6 HOH A 127 527 766 HOH HOH . F 6 HOH A 128 528 853 HOH HOH . F 6 HOH A 129 529 765 HOH HOH . F 6 HOH A 130 530 800 HOH HOH . F 6 HOH A 131 531 607 HOH HOH . F 6 HOH A 132 532 894 HOH HOH . F 6 HOH A 133 533 851 HOH HOH . F 6 HOH A 134 534 753 HOH HOH . F 6 HOH A 135 535 783 HOH HOH . F 6 HOH A 136 536 504 HOH HOH . F 6 HOH A 137 537 802 HOH HOH . F 6 HOH A 138 538 824 HOH HOH . F 6 HOH A 139 539 834 HOH HOH . F 6 HOH A 140 540 930 HOH HOH . F 6 HOH A 141 541 881 HOH HOH . F 6 HOH A 142 542 843 HOH HOH . F 6 HOH A 143 543 889 HOH HOH . F 6 HOH A 144 544 746 HOH HOH . F 6 HOH A 145 545 907 HOH HOH . F 6 HOH A 146 546 947 HOH HOH . F 6 HOH A 147 547 798 HOH HOH . F 6 HOH A 148 548 849 HOH HOH . F 6 HOH A 149 549 902 HOH HOH . F 6 HOH A 150 550 933 HOH HOH . F 6 HOH A 151 551 830 HOH HOH . F 6 HOH A 152 552 869 HOH HOH . F 6 HOH A 153 553 796 HOH HOH . F 6 HOH A 154 554 550 HOH HOH . F 6 HOH A 155 555 726 HOH HOH . F 6 HOH A 156 556 905 HOH HOH . F 6 HOH A 157 557 893 HOH HOH . F 6 HOH A 158 558 927 HOH HOH . F 6 HOH A 159 559 844 HOH HOH . F 6 HOH A 160 560 832 HOH HOH . F 6 HOH A 161 561 547 HOH HOH . F 6 HOH A 162 562 837 HOH HOH . F 6 HOH A 163 563 722 HOH HOH . F 6 HOH A 164 564 895 HOH HOH . F 6 HOH A 165 565 926 HOH HOH . F 6 HOH A 166 566 776 HOH HOH . F 6 HOH A 167 567 850 HOH HOH . F 6 HOH A 168 568 838 HOH HOH . F 6 HOH A 169 569 955 HOH HOH . F 6 HOH A 170 570 899 HOH HOH . F 6 HOH A 171 571 929 HOH HOH . F 6 HOH A 172 572 712 HOH HOH . F 6 HOH A 173 573 908 HOH HOH . F 6 HOH A 174 574 883 HOH HOH . F 6 HOH A 175 575 897 HOH HOH . F 6 HOH A 176 576 904 HOH HOH . F 6 HOH A 177 577 778 HOH HOH . F 6 HOH A 178 578 770 HOH HOH . F 6 HOH A 179 579 806 HOH HOH . F 6 HOH A 180 580 820 HOH HOH . F 6 HOH A 181 581 809 HOH HOH . F 6 HOH A 182 582 879 HOH HOH . F 6 HOH A 183 583 878 HOH HOH . F 6 HOH A 184 584 924 HOH HOH . F 6 HOH A 185 585 909 HOH HOH . F 6 HOH A 186 586 828 HOH HOH . F 6 HOH A 187 587 774 HOH HOH . F 6 HOH A 188 588 944 HOH HOH . F 6 HOH A 189 589 954 HOH HOH . F 6 HOH A 190 590 810 HOH HOH . F 6 HOH A 191 591 797 HOH HOH . F 6 HOH A 192 592 871 HOH HOH . F 6 HOH A 193 593 760 HOH HOH . F 6 HOH A 194 594 950 HOH HOH . F 6 HOH A 195 595 873 HOH HOH . F 6 HOH A 196 596 811 HOH HOH . F 6 HOH A 197 597 886 HOH HOH . F 6 HOH A 198 598 945 HOH HOH . F 6 HOH A 199 599 577 HOH HOH . F 6 HOH A 200 600 732 HOH HOH . F 6 HOH A 201 601 768 HOH HOH . F 6 HOH A 202 602 939 HOH HOH . F 6 HOH A 203 603 819 HOH HOH . F 6 HOH A 204 604 763 HOH HOH . F 6 HOH A 205 605 748 HOH HOH . F 6 HOH A 206 606 896 HOH HOH . F 6 HOH A 207 607 761 HOH HOH . F 6 HOH A 208 608 911 HOH HOH . F 6 HOH A 209 609 931 HOH HOH . F 6 HOH A 210 610 840 HOH HOH . F 6 HOH A 211 611 829 HOH HOH . F 6 HOH A 212 612 910 HOH HOH . F 6 HOH A 213 613 842 HOH HOH . F 6 HOH A 214 614 775 HOH HOH . F 6 HOH A 215 615 925 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.811 _atom_site.Cartn_y -10.857 _atom_site.Cartn_z -21.102 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #