data_6FFH # _model_server_result.job_id YmoYCdlTFgk5ERZ5enqEbw _model_server_result.datetime_utc '2024-11-04 22:39:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ffh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4006}' # _entry.id 6FFH # _exptl.entry_id 6FFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.684 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-chlorophenyl)-3-(3-methyl-5-oxidanylidene-4~{H}-imidazol-2-yl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.22 _cell.angle_gamma 90 _cell.entry_id 6FFH _cell.length_a 143.217 _cell.length_b 43.478 _cell.length_c 82.383 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 644 1_555 A SG CYS 328 A CYS 1733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C PHE 68 A PHE 633 1_555 A N YCM 69 A YCM 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C YCM 69 A YCM 634 1_555 A N LEU 70 A LEU 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C11 H11 Cl N4 O2' _chem_comp.formula_weight 266.684 _chem_comp.id D7W _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-chlorophenyl)-3-(3-methyl-5-oxidanylidene-4~{H}-imidazol-2-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C14 D7W sing 83 n n C14 C15 D7W doub 84 n y C14 C13 D7W sing 85 n y C15 C16 D7W sing 86 n y C13 C12 D7W doub 87 n y C16 C17 D7W doub 88 n y C12 C17 D7W sing 89 n y C12 N11 D7W sing 90 n n O10 C09 D7W doub 91 n n N11 C09 D7W sing 92 n n C09 N08 D7W sing 93 n n N06 C04 D7W sing 94 n n N06 C07 D7W doub 95 n n O05 C04 D7W doub 96 n n N08 C07 D7W sing 97 n n C04 C03 D7W sing 98 n n C07 N02 D7W sing 99 n n C03 N02 D7W sing 100 n n N02 C01 D7W sing 101 n n C13 H1 D7W sing 102 n n C15 H2 D7W sing 103 n n C17 H3 D7W sing 104 n n C01 H4 D7W sing 105 n n C01 H5 D7W sing 106 n n C01 H6 D7W sing 107 n n C03 H7 D7W sing 108 n n C03 H8 D7W sing 109 n n C16 H9 D7W sing 110 n n N08 H10 D7W sing 111 n n N11 H11 D7W sing 112 n n # _atom_sites.entry_id 6FFH _atom_sites.fract_transf_matrix[1][1] 0.006982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 4001 4001 OLA OLA . C 2 OLA A 1 4002 4002 OLA OLA . D 2 OLA A 1 4003 4003 OLA OLA . E 2 OLA A 1 4004 4004 OLA OLA . F 3 MES A 1 4005 4006 MES MES . G 4 D7W A 1 4006 1 D7W LIG . H 2 OLA A 1 4007 2 OLA OLA . I 5 OLC A 1 4008 1 OLC OLC . J 6 HOH A 1 4101 11 HOH HOH . J 6 HOH A 2 4102 7 HOH HOH . J 6 HOH A 3 4103 1 HOH HOH . J 6 HOH A 4 4104 9 HOH HOH . J 6 HOH A 5 4105 10 HOH HOH . J 6 HOH A 6 4106 4 HOH HOH . J 6 HOH A 7 4107 2 HOH HOH . J 6 HOH A 8 4108 6 HOH HOH . J 6 HOH A 9 4109 8 HOH HOH . J 6 HOH A 10 4110 5 HOH HOH . J 6 HOH A 11 4111 12 HOH HOH . J 6 HOH A 12 4112 3 HOH HOH . J 6 HOH A 13 4113 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 D7W . . . G 4 -24.73 14.989 40.542 1 52.04 ? C13 D7W 4006 A 1 HETATM 2 C C15 D7W . . . G 4 -26.068 13.231 39.465 1 53.07 ? C15 D7W 4006 A 1 HETATM 3 C C17 D7W . . . G 4 -25.329 13.015 41.805 1 52.04 ? C17 D7W 4006 A 1 HETATM 4 C C01 D7W . . . G 4 -21.801 18.265 47.081 1 46.98 ? C01 D7W 4006 A 1 HETATM 5 C C03 D7W . . . G 4 -22.977 20.307 46.033 1 47 ? C03 D7W 4006 A 1 HETATM 6 C C04 D7W . . . G 4 -23.881 20.515 44.816 1 47.33 ? C04 D7W 4006 A 1 HETATM 7 C C07 D7W . . . G 4 -23.338 18.247 44.898 1 47.6 ? C07 D7W 4006 A 1 HETATM 8 C C09 D7W . . . G 4 -23.967 16.21 43.378 1 50.47 ? C09 D7W 4006 A 1 HETATM 9 C C12 D7W . . . G 4 -24.672 14.271 41.769 1 51.65 ? C12 D7W 4006 A 1 HETATM 10 C C14 D7W . . . G 4 -25.418 14.466 39.434 1 53.04 ? C14 D7W 4006 A 1 HETATM 11 C C16 D7W . . . G 4 -26.013 12.512 40.675 1 52.79 ? C16 D7W 4006 A 1 HETATM 12 N N02 D7W . . . G 4 -22.661 18.849 46.038 1 47 ? N02 D7W 4006 A 1 HETATM 13 N N06 D7W . . . G 4 -24.035 19.205 44.198 1 47.22 ? N06 D7W 4006 A 1 HETATM 14 N N08 D7W . . . G 4 -23.273 16.819 44.549 1 48.87 ? N08 D7W 4006 A 1 HETATM 15 N N11 D7W . . . G 4 -23.944 14.806 42.973 1 51.31 ? N11 D7W 4006 A 1 HETATM 16 O O05 D7W . . . G 4 -24.358 21.582 44.465 1 47.63 ? O05 D7W 4006 A 1 HETATM 17 O O10 D7W . . . G 4 -24.624 16.967 42.688 1 51.14 ? O10 D7W 4006 A 1 HETATM 18 CL CL1 D7W . . . G 4 -25.47 15.418 37.894 1 54.39 ? CL1 D7W 4006 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #