data_6FFK # _model_server_result.job_id 1EZG3NGq9R3KtggorssE_g _model_server_result.datetime_utc '2024-11-22 21:49:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ffk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 6FFK # _exptl.entry_id 6FFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PtCl2(1(R),2(R)-DACH) _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.26 _cell.angle_gamma 90 _cell.entry_id 6FFK _cell.length_a 156.85 _cell.length_b 35.37 _cell.length_c 114.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 B SG CYS 57 B CYS 57 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 C SG CYS 57 D CYS 57 1_555 C SG CYS 146 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 D SG CYS 57 F CYS 57 1_555 D SG CYS 146 F CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A SG CYS 111 A CYS 111 1_555 E PT8 D7Z . A D7Z 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 B SG CYS 111 B CYS 111 1_555 F PT8 D7Z . B D7Z 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 C SG CYS 111 D CYS 111 1_555 G PT8 D7Z . D D7Z 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 D SG CYS 111 F CYS 111 1_555 H PT8 D7Z . F D7Z 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C6 H12 Cl2 N2 Pt' _chem_comp.formula_weight 378.157 _chem_comp.id D7Z _chem_comp.mon_nstd_flag . _chem_comp.name PtCl2(1(R),2(R)-DACH) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 D7Z sing 83 n n C3 C4 D7Z sing 84 n n C6 C1 D7Z sing 85 n n C6 C5 D7Z sing 86 n n N1 C1 D7Z sing 87 n n N1 PT8 D7Z sing 88 n n C1 C2 D7Z sing 89 n n C2 N2 D7Z sing 90 n n C4 C5 D7Z sing 91 n n N2 PT8 D7Z sing 92 n n PT8 CL1 D7Z sing 93 n n C3 H1 D7Z sing 94 n n C3 H2 D7Z sing 95 n n C6 H3 D7Z sing 96 n n C6 H4 D7Z sing 97 n n N1 H5 D7Z sing 98 n n C1 H6 D7Z sing 99 n n C2 H7 D7Z sing 100 n n C4 H8 D7Z sing 101 n n C4 H9 D7Z sing 102 n n C5 H10 D7Z sing 103 n n C5 H11 D7Z sing 104 n n N2 H12 D7Z sing 105 n n PT8 CL2 D7Z sing 106 n n # _atom_sites.entry_id 6FFK _atom_sites.fract_transf_matrix[1][1] 0.006376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00261 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 D7Z A 1 201 201 D7Z D7Z . F 2 D7Z B 1 201 201 D7Z D7Z . G 2 D7Z D 1 201 201 D7Z D7Z . H 2 D7Z F 1 201 201 D7Z D7Z . I 3 HOH A 1 301 151 HOH HOH . I 3 HOH A 2 302 108 HOH HOH . I 3 HOH A 3 303 79 HOH HOH . I 3 HOH A 4 304 208 HOH HOH . I 3 HOH A 5 305 11 HOH HOH . I 3 HOH A 6 306 66 HOH HOH . I 3 HOH A 7 307 32 HOH HOH . I 3 HOH A 8 308 12 HOH HOH . I 3 HOH A 9 309 7 HOH HOH . I 3 HOH A 10 310 14 HOH HOH . I 3 HOH A 11 311 234 HOH HOH . I 3 HOH A 12 312 10 HOH HOH . I 3 HOH A 13 313 360 HOH HOH . I 3 HOH A 14 314 15 HOH HOH . I 3 HOH A 15 315 65 HOH HOH . I 3 HOH A 16 316 157 HOH HOH . I 3 HOH A 17 317 245 HOH HOH . I 3 HOH A 18 318 140 HOH HOH . I 3 HOH A 19 319 205 HOH HOH . J 3 HOH B 1 301 9 HOH HOH . J 3 HOH B 2 302 83 HOH HOH . J 3 HOH B 3 303 67 HOH HOH . J 3 HOH B 4 304 6 HOH HOH . J 3 HOH B 5 305 51 HOH HOH . J 3 HOH B 6 306 262 HOH HOH . J 3 HOH B 7 307 223 HOH HOH . J 3 HOH B 8 308 72 HOH HOH . J 3 HOH B 9 309 196 HOH HOH . J 3 HOH B 10 310 159 HOH HOH . J 3 HOH B 11 311 40 HOH HOH . J 3 HOH B 12 312 218 HOH HOH . J 3 HOH B 13 313 257 HOH HOH . J 3 HOH B 14 314 48 HOH HOH . J 3 HOH B 15 315 35 HOH HOH . J 3 HOH B 16 316 217 HOH HOH . J 3 HOH B 17 317 177 HOH HOH . J 3 HOH B 18 318 41 HOH HOH . J 3 HOH B 19 319 4 HOH HOH . J 3 HOH B 20 320 75 HOH HOH . J 3 HOH B 21 321 28 HOH HOH . J 3 HOH B 22 322 211 HOH HOH . J 3 HOH B 23 323 185 HOH HOH . J 3 HOH B 24 324 98 HOH HOH . K 3 HOH D 1 301 61 HOH HOH . K 3 HOH D 2 302 70 HOH HOH . K 3 HOH D 3 303 313 HOH HOH . K 3 HOH D 4 304 31 HOH HOH . K 3 HOH D 5 305 154 HOH HOH . K 3 HOH D 6 306 21 HOH HOH . K 3 HOH D 7 307 158 HOH HOH . K 3 HOH D 8 308 212 HOH HOH . K 3 HOH D 9 309 16 HOH HOH . L 3 HOH F 1 301 143 HOH HOH . L 3 HOH F 2 302 17 HOH HOH . L 3 HOH F 3 303 26 HOH HOH . L 3 HOH F 4 304 221 HOH HOH . L 3 HOH F 5 305 136 HOH HOH . L 3 HOH F 6 306 94 HOH HOH . L 3 HOH F 7 307 310 HOH HOH . L 3 HOH F 8 308 29 HOH HOH . L 3 HOH F 9 309 152 HOH HOH . L 3 HOH F 10 310 206 HOH HOH . L 3 HOH F 11 311 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 D7Z . . . H 2 -12.342 -3.997 -24.212 0.2 70.83 ? C3 D7Z 201 F 1 HETATM 2 C C6 D7Z . . . H 2 -14.933 -2.67 -23.522 0.2 70.67 ? C6 D7Z 201 F 1 HETATM 3 N N1 D7Z . . . H 2 -16.079 -4.79 -24.154 0.2 71.04 ? N1 D7Z 201 F 1 HETATM 4 C C1 D7Z . . . H 2 -14.812 -4.188 -23.7 0.2 70.76 ? C1 D7Z 201 F 1 HETATM 5 C C2 D7Z . . . H 2 -13.693 -4.543 -24.686 0.2 70.73 ? C2 D7Z 201 F 1 HETATM 6 C C4 D7Z . . . H 2 -12.403 -2.479 -23.969 0.2 70.83 ? C4 D7Z 201 F 1 HETATM 7 C C5 D7Z . . . H 2 -13.596 -2.037 -23.101 0.2 70.76 ? C5 D7Z 201 F 1 HETATM 8 N N2 D7Z . . . H 2 -13.672 -6.002 -24.915 0.2 70.85 ? N2 D7Z 201 F 1 HETATM 9 PT PT8 D7Z . . . H 2 -15.619 -6.588 -24.998 0.2 71.33 ? PT8 D7Z 201 F 1 HETATM 10 CL CL1 D7Z . . . H 2 -15.034 -8.742 -25.945 0.2 70.65 ? CL1 D7Z 201 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #