data_6FG7 # _model_server_result.job_id KqBZEHtT1PDX49MUE4eyvw _model_server_result.datetime_utc '2025-07-01 15:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 6FG7 # _exptl.entry_id 6FG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FG7 _cell.length_a 153.77 _cell.length_b 153.77 _cell.length_c 110.055 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1000 NAG 2 n C NAG 2 C 2 NAG A 1001 NAG 2 n C FUC 3 C 3 FUC A 1002 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 123 A CYS 123 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 212 A CYS 212 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 36 B CYS 36 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 123 B CYS 123 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf8 B SG CYS 212 B CYS 212 1_555 B SG CYS 220 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 58 A ASN 58 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 B ND2 ASN 58 B ASN 58 1_555 D C1 NAG . B NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 268 n n C1 O1 NAG sing 269 n n C1 O5 NAG sing 270 n n C1 H1 NAG sing 271 n n C2 C3 NAG sing 272 n n C2 N2 NAG sing 273 n n C2 H2 NAG sing 274 n n C3 C4 NAG sing 275 n n C3 O3 NAG sing 276 n n C3 H3 NAG sing 277 n n C4 C5 NAG sing 278 n n C4 O4 NAG sing 279 n n C4 H4 NAG sing 280 n n C5 C6 NAG sing 281 n n C5 O5 NAG sing 282 n n C5 H5 NAG sing 283 n n C6 O6 NAG sing 284 n n C6 H61 NAG sing 285 n n C6 H62 NAG sing 286 n n C7 C8 NAG sing 287 n n C7 N2 NAG sing 288 n n C7 O7 NAG doub 289 n n C8 H81 NAG sing 290 n n C8 H82 NAG sing 291 n n C8 H83 NAG sing 292 n n N2 HN2 NAG sing 293 n n O1 HO1 NAG sing 294 n n O3 HO3 NAG sing 295 n n O4 HO4 NAG sing 296 n n O6 HO6 NAG sing 297 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FG7 _atom_sites.fract_transf_matrix[1][1] 0.006503 _atom_sites.fract_transf_matrix[1][2] 0.003755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG B 1 1000 1000 NAG NAG . E 4 MLI B 1 1001 1001 MLI MLI . F 5 HOH A 1 1101 106 HOH HOH . F 5 HOH A 2 1102 91 HOH HOH . F 5 HOH A 3 1103 10 HOH HOH . F 5 HOH A 4 1104 24 HOH HOH . F 5 HOH A 5 1105 97 HOH HOH . F 5 HOH A 6 1106 33 HOH HOH . F 5 HOH A 7 1107 101 HOH HOH . F 5 HOH A 8 1108 107 HOH HOH . F 5 HOH A 9 1109 55 HOH HOH . F 5 HOH A 10 1110 83 HOH HOH . F 5 HOH A 11 1111 32 HOH HOH . F 5 HOH A 12 1112 67 HOH HOH . F 5 HOH A 13 1113 93 HOH HOH . F 5 HOH A 14 1114 22 HOH HOH . F 5 HOH A 15 1115 102 HOH HOH . F 5 HOH A 16 1116 4 HOH HOH . F 5 HOH A 17 1117 66 HOH HOH . F 5 HOH A 18 1118 18 HOH HOH . F 5 HOH A 19 1119 84 HOH HOH . F 5 HOH A 20 1120 36 HOH HOH . F 5 HOH A 21 1121 69 HOH HOH . F 5 HOH A 22 1122 116 HOH HOH . F 5 HOH A 23 1123 80 HOH HOH . F 5 HOH A 24 1124 17 HOH HOH . F 5 HOH A 25 1125 45 HOH HOH . F 5 HOH A 26 1126 44 HOH HOH . F 5 HOH A 27 1127 90 HOH HOH . F 5 HOH A 28 1128 30 HOH HOH . F 5 HOH A 29 1129 94 HOH HOH . F 5 HOH A 30 1130 42 HOH HOH . F 5 HOH A 31 1131 13 HOH HOH . F 5 HOH A 32 1132 43 HOH HOH . F 5 HOH A 33 1133 62 HOH HOH . F 5 HOH A 34 1134 31 HOH HOH . F 5 HOH A 35 1135 53 HOH HOH . F 5 HOH A 36 1136 21 HOH HOH . F 5 HOH A 37 1137 79 HOH HOH . F 5 HOH A 38 1138 58 HOH HOH . F 5 HOH A 39 1139 52 HOH HOH . F 5 HOH A 40 1140 48 HOH HOH . F 5 HOH A 41 1141 26 HOH HOH . F 5 HOH A 42 1142 2 HOH HOH . F 5 HOH A 43 1143 14 HOH HOH . F 5 HOH A 44 1144 25 HOH HOH . F 5 HOH A 45 1145 8 HOH HOH . F 5 HOH A 46 1146 82 HOH HOH . F 5 HOH A 47 1147 23 HOH HOH . F 5 HOH A 48 1148 20 HOH HOH . F 5 HOH A 49 1149 73 HOH HOH . F 5 HOH A 50 1150 59 HOH HOH . F 5 HOH A 51 1151 115 HOH HOH . F 5 HOH A 52 1152 71 HOH HOH . F 5 HOH A 53 1153 46 HOH HOH . F 5 HOH A 54 1154 9 HOH HOH . F 5 HOH A 55 1155 68 HOH HOH . F 5 HOH A 56 1156 56 HOH HOH . F 5 HOH A 57 1157 114 HOH HOH . F 5 HOH A 58 1158 86 HOH HOH . F 5 HOH A 59 1159 119 HOH HOH . F 5 HOH A 60 1160 112 HOH HOH . F 5 HOH A 61 1161 60 HOH HOH . F 5 HOH A 62 1162 54 HOH HOH . F 5 HOH A 63 1163 75 HOH HOH . F 5 HOH A 64 1164 47 HOH HOH . G 5 HOH B 1 1101 103 HOH HOH . G 5 HOH B 2 1102 92 HOH HOH . G 5 HOH B 3 1103 39 HOH HOH . G 5 HOH B 4 1104 88 HOH HOH . G 5 HOH B 5 1105 105 HOH HOH . G 5 HOH B 6 1106 109 HOH HOH . G 5 HOH B 7 1107 77 HOH HOH . G 5 HOH B 8 1108 61 HOH HOH . G 5 HOH B 9 1109 95 HOH HOH . G 5 HOH B 10 1110 40 HOH HOH . G 5 HOH B 11 1111 70 HOH HOH . G 5 HOH B 12 1112 85 HOH HOH . G 5 HOH B 13 1113 63 HOH HOH . G 5 HOH B 14 1114 37 HOH HOH . G 5 HOH B 15 1115 38 HOH HOH . G 5 HOH B 16 1116 1 HOH HOH . G 5 HOH B 17 1117 16 HOH HOH . G 5 HOH B 18 1118 11 HOH HOH . G 5 HOH B 19 1119 111 HOH HOH . G 5 HOH B 20 1120 7 HOH HOH . G 5 HOH B 21 1121 51 HOH HOH . G 5 HOH B 22 1122 118 HOH HOH . G 5 HOH B 23 1123 50 HOH HOH . G 5 HOH B 24 1124 100 HOH HOH . G 5 HOH B 25 1125 65 HOH HOH . G 5 HOH B 26 1126 72 HOH HOH . G 5 HOH B 27 1127 41 HOH HOH . G 5 HOH B 28 1128 5 HOH HOH . G 5 HOH B 29 1129 35 HOH HOH . G 5 HOH B 30 1130 108 HOH HOH . G 5 HOH B 31 1131 96 HOH HOH . G 5 HOH B 32 1132 3 HOH HOH . G 5 HOH B 33 1133 104 HOH HOH . G 5 HOH B 34 1134 64 HOH HOH . G 5 HOH B 35 1135 6 HOH HOH . G 5 HOH B 36 1136 76 HOH HOH . G 5 HOH B 37 1137 12 HOH HOH . G 5 HOH B 38 1138 99 HOH HOH . G 5 HOH B 39 1139 15 HOH HOH . G 5 HOH B 40 1140 28 HOH HOH . G 5 HOH B 41 1141 34 HOH HOH . G 5 HOH B 42 1142 27 HOH HOH . G 5 HOH B 43 1143 19 HOH HOH . G 5 HOH B 44 1144 78 HOH HOH . G 5 HOH B 45 1145 57 HOH HOH . G 5 HOH B 46 1146 117 HOH HOH . G 5 HOH B 47 1147 29 HOH HOH . G 5 HOH B 48 1148 89 HOH HOH . G 5 HOH B 49 1149 81 HOH HOH . G 5 HOH B 50 1150 98 HOH HOH . G 5 HOH B 51 1151 87 HOH HOH . G 5 HOH B 52 1152 74 HOH HOH . G 5 HOH B 53 1153 113 HOH HOH . G 5 HOH B 54 1154 49 HOH HOH . G 5 HOH B 55 1155 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 94.786 40.446 -21.894 1 56.5 ? C1 NAG 1000 B 1 HETATM 2 C C2 NAG . . . D 3 93.956 39.885 -23.054 1 61.75 ? C2 NAG 1000 B 1 HETATM 3 C C3 NAG . . . D 3 93.519 41.045 -23.943 1 63.45 ? C3 NAG 1000 B 1 HETATM 4 C C4 NAG . . . D 3 92.601 41.959 -23.134 1 64.52 ? C4 NAG 1000 B 1 HETATM 5 C C5 NAG . . . D 3 93.242 42.383 -21.802 1 63.74 ? C5 NAG 1000 B 1 HETATM 6 C C6 NAG . . . D 3 92.166 42.935 -20.862 1 64.44 ? C6 NAG 1000 B 1 HETATM 7 C C7 NAG . . . D 3 94.134 37.71 -24.271 1 60.92 ? C7 NAG 1000 B 1 HETATM 8 C C8 NAG . . . D 3 92.694 37.37 -23.978 1 60.63 ? C8 NAG 1000 B 1 HETATM 9 N N2 NAG . . . D 3 94.664 38.866 -23.827 1 61.13 ? N2 NAG 1000 B 1 HETATM 10 O O3 NAG . . . D 3 92.839 40.563 -25.109 1 65.35 ? O3 NAG 1000 B 1 HETATM 11 O O4 NAG . . . D 3 92.259 43.113 -23.918 1 64.66 ? O4 NAG 1000 B 1 HETATM 12 O O5 NAG . . . D 3 93.915 41.299 -21.123 1 60.9 ? O5 NAG 1000 B 1 HETATM 13 O O6 NAG . . . D 3 92.705 43.965 -20.025 1 64.5 ? O6 NAG 1000 B 1 HETATM 14 O O7 NAG . . . D 3 94.817 36.927 -24.912 1 59.71 ? O7 NAG 1000 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #