data_6FH2 # _model_server_result.job_id XP56ZXf8ilC0XpXlVY2KeA _model_server_result.datetime_utc '2024-12-21 17:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6FH2 # _exptl.entry_id 6FH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMP PHOSPHORAMIDATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.2 _cell.angle_gamma 90 _cell.entry_id 6FH2 _cell.length_a 50.34 _cell.length_b 80.62 _cell.length_c 97.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N6 O9 P2' _chem_comp.formula_weight 426.216 _chem_comp.id AN2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMP PHOSPHORAMIDATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB AN2 sing 13 n n N3B H3B1 AN2 sing 14 n n N3B H3B2 AN2 sing 15 n n PB O2B AN2 sing 16 n n PB O1B AN2 doub 17 n n PB O3A AN2 sing 18 n n O2B HO2B AN2 sing 19 n n O3A PA AN2 sing 20 n n PA O1A AN2 doub 21 n n PA O2A AN2 sing 22 n n PA O5' AN2 sing 23 n n O2A HO2A AN2 sing 24 n n O5' C5' AN2 sing 25 n n C5' C4' AN2 sing 26 n n C5' "H5'1" AN2 sing 27 n n C5' "H5'2" AN2 sing 28 n n C4' O4' AN2 sing 29 n n C4' C3' AN2 sing 30 n n C4' H4' AN2 sing 31 n n O4' C1' AN2 sing 32 n n C3' O3' AN2 sing 33 n n C3' C2' AN2 sing 34 n n C3' H3' AN2 sing 35 n n O3' HA AN2 sing 36 n n C2' O2' AN2 sing 37 n n C2' C1' AN2 sing 38 n n C2' H2' AN2 sing 39 n n O2' HB AN2 sing 40 n n C1' N9 AN2 sing 41 n n C1' H1' AN2 sing 42 n n N9 C8 AN2 sing 43 n y N9 C4 AN2 sing 44 n y C8 N7 AN2 doub 45 n y C8 H8 AN2 sing 46 n n N7 C5 AN2 sing 47 n y C5 C4 AN2 doub 48 n y C5 C6 AN2 sing 49 n y C4 N3 AN2 sing 50 n y N3 C2 AN2 doub 51 n y C2 N1 AN2 sing 52 n y C2 H2 AN2 sing 53 n n N1 C6 AN2 doub 54 n y C6 N6 AN2 sing 55 n n N6 H6N1 AN2 sing 56 n n N6 H6N2 AN2 sing 57 n n # _atom_sites.entry_id 6FH2 _atom_sites.fract_transf_matrix[1][1] 0.019865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003218 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AN2 A 1 401 401 AN2 AN2 . D 3 EDO A 1 402 1 EDO EDO . E 3 EDO A 1 403 2 EDO EDO . F 3 EDO A 1 404 4 EDO EDO . G 3 EDO A 1 405 5 EDO EDO . H 3 EDO B 1 401 3 EDO EDO . I 3 EDO B 1 402 6 EDO EDO . J 4 HOH A 1 501 2 HOH HOH . J 4 HOH A 2 502 16 HOH HOH . J 4 HOH A 3 503 4 HOH HOH . J 4 HOH A 4 504 44 HOH HOH . J 4 HOH A 5 505 19 HOH HOH . J 4 HOH A 6 506 9 HOH HOH . J 4 HOH A 7 507 38 HOH HOH . J 4 HOH A 8 508 13 HOH HOH . J 4 HOH A 9 509 8 HOH HOH . J 4 HOH A 10 510 40 HOH HOH . J 4 HOH A 11 511 12 HOH HOH . J 4 HOH A 12 512 21 HOH HOH . J 4 HOH A 13 513 14 HOH HOH . J 4 HOH A 14 514 46 HOH HOH . J 4 HOH A 15 515 37 HOH HOH . J 4 HOH A 16 516 47 HOH HOH . J 4 HOH A 17 517 31 HOH HOH . J 4 HOH A 18 518 36 HOH HOH . J 4 HOH A 19 519 45 HOH HOH . J 4 HOH A 20 520 43 HOH HOH . K 4 HOH B 1 501 3 HOH HOH . K 4 HOH B 2 502 25 HOH HOH . K 4 HOH B 3 503 32 HOH HOH . K 4 HOH B 4 504 1 HOH HOH . K 4 HOH B 5 505 26 HOH HOH . K 4 HOH B 6 506 24 HOH HOH . K 4 HOH B 7 507 11 HOH HOH . K 4 HOH B 8 508 6 HOH HOH . K 4 HOH B 9 509 34 HOH HOH . K 4 HOH B 10 510 30 HOH HOH . K 4 HOH B 11 511 33 HOH HOH . K 4 HOH B 12 512 29 HOH HOH . K 4 HOH B 13 513 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B AN2 . . . C 2 -27.569 -34.596 345.605 1 78.44 ? N3B AN2 401 A 1 HETATM 2 P PB AN2 . . . C 2 -27.09 -36.055 344.851 1 78.56 ? PB AN2 401 A 1 HETATM 3 O O2B AN2 . . . C 2 -25.928 -36.536 345.521 1 82.71 ? O2B AN2 401 A 1 HETATM 4 O O1B AN2 . . . C 2 -28.168 -37.158 345.074 1 90.22 ? O1B AN2 401 A 1 HETATM 5 O O3A AN2 . . . C 2 -26.798 -35.884 343.319 1 80.47 ? O3A AN2 401 A 1 HETATM 6 P PA AN2 . . . C 2 -26.876 -34.507 342.557 1 90.29 ? PA AN2 401 A 1 HETATM 7 O O1A AN2 . . . C 2 -27.384 -34.79 341.206 1 81.33 ? O1A AN2 401 A 1 HETATM 8 O O2A AN2 . . . C 2 -27.551 -33.507 343.412 1 89.36 ? O2A AN2 401 A 1 HETATM 9 O O5' AN2 . . . C 2 -25.377 -34.11 342.412 1 79.21 ? O5' AN2 401 A 1 HETATM 10 C C5' AN2 . . . C 2 -24.728 -33.604 343.551 1 80.46 ? C5' AN2 401 A 1 HETATM 11 C C4' AN2 . . . C 2 -23.337 -33.251 343.137 1 70.15 ? C4' AN2 401 A 1 HETATM 12 O O4' AN2 . . . C 2 -22.764 -34.414 342.622 1 70.24 ? O4' AN2 401 A 1 HETATM 13 C C3' AN2 . . . C 2 -23.458 -32.303 341.994 1 77.47 ? C3' AN2 401 A 1 HETATM 14 O O3' AN2 . . . C 2 -23.065 -31.055 342.511 1 82.34 ? O3' AN2 401 A 1 HETATM 15 C C2' AN2 . . . C 2 -22.57 -32.841 340.901 1 77.45 ? C2' AN2 401 A 1 HETATM 16 O O2' AN2 . . . C 2 -21.556 -31.908 340.545 1 72.4 ? O2' AN2 401 A 1 HETATM 17 C C1' AN2 . . . C 2 -21.935 -34.039 341.551 1 76.88 ? C1' AN2 401 A 1 HETATM 18 N N9 AN2 . . . C 2 -21.763 -35.232 340.716 1 73.27 ? N9 AN2 401 A 1 HETATM 19 C C8 AN2 . . . C 2 -22.635 -36.199 340.474 1 69.1 ? C8 AN2 401 A 1 HETATM 20 N N7 AN2 . . . C 2 -22.088 -37.155 339.706 1 67.15 ? N7 AN2 401 A 1 HETATM 21 C C5 AN2 . . . C 2 -20.842 -36.79 339.461 1 65.13 ? C5 AN2 401 A 1 HETATM 22 C C4 AN2 . . . C 2 -20.637 -35.534 340.141 1 67.74 ? C4 AN2 401 A 1 HETATM 23 N N3 AN2 . . . C 2 -19.462 -34.933 340.064 1 61.64 ? N3 AN2 401 A 1 HETATM 24 C C2 AN2 . . . C 2 -18.489 -35.481 339.37 1 63.59 ? C2 AN2 401 A 1 HETATM 25 N N1 AN2 . . . C 2 -18.586 -36.628 338.717 1 67.11 ? N1 AN2 401 A 1 HETATM 26 C C6 AN2 . . . C 2 -19.705 -37.324 338.723 1 65.14 ? C6 AN2 401 A 1 HETATM 27 N N6 AN2 . . . C 2 -19.764 -38.47 338.075 1 63.52 ? N6 AN2 401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #