data_6FHL # _model_server_result.job_id OLc9f677IAuc0rAqih0gGw _model_server_result.datetime_utc '2024-10-19 12:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6FHL # _exptl.entry_id 6FHL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FHL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 I N N ? 2 L N N ? 2 O N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O2B ADP . A ADP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 G MG MG . A MG 402 1_555 H O3 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 I O2B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 J MG MG . B MG 402 1_555 K O3 PO4 . B PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 L O2B ADP . C ADP 401 1_555 M MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 M MG MG . C MG 402 1_555 N O3 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc7 O O2B ADP . D ADP 401 1_555 P MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 P MG MG . D MG 402 1_555 Q O3 PO4 . D PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 R O2B ADP . E ADP 401 1_555 S MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 S MG MG . E MG 402 1_555 T O3 PO4 . E PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FHL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ADP A 1 401 376 ADP ADP . G 3 MG A 1 402 377 MG MG . H 4 PO4 A 1 403 378 PO4 PO4 . I 2 ADP B 1 401 376 ADP ADP . J 3 MG B 1 402 377 MG MG . K 4 PO4 B 1 403 378 PO4 PO4 . L 2 ADP C 1 401 376 ADP ADP . M 3 MG C 1 402 377 MG MG . N 4 PO4 C 1 403 378 PO4 PO4 . O 2 ADP D 1 401 376 ADP ADP . P 3 MG D 1 402 377 MG MG . Q 4 PO4 D 1 403 378 PO4 PO4 . R 2 ADP E 1 401 376 ADP ADP . S 3 MG E 1 402 377 MG MG . T 4 PO4 E 1 403 378 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 2 125.027 137.553 193.49 1 37.04 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . F 2 124.051 138.161 192.525 1 37.5 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . F 2 124.321 137.256 194.837 1 35.67 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . F 2 126.364 138.178 193.586 1 38.89 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . F 2 124.686 134.887 193.296 1 28.37 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . F 2 123.208 135.061 193.071 1 33.71 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . F 2 125.105 134.465 194.667 1 33.43 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . F 2 125.429 136.181 192.94 1 31.24 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . F 2 125.285 133.85 192.292 1 32.46 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . F 2 126.023 134.343 191.197 1 34.58 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . F 2 127.45 133.814 191.248 1 36.6 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . F 2 127.455 132.443 191.605 1 38.11 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . F 2 128.123 133.865 189.903 1 35.12 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . F 2 129.54 133.973 189.964 1 37.74 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . F 2 127.799 132.548 189.371 1 39.45 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . F 2 128.737 132.202 188.405 1 40.39 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . F 2 127.951 131.661 190.538 1 37.12 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . F 2 127.148 130.472 190.315 1 37.45 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . F 2 125.837 130.429 190.117 1 39.55 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . F 2 125.406 129.162 189.93 1 40.29 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . F 2 126.49 128.386 190.012 1 38.06 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . F 2 126.782 126.954 189.9 1 39.43 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . F 2 125.832 126.041 189.657 1 43.28 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . F 2 128.047 126.574 190.052 1 37.05 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . F 2 129.02 127.454 190.292 1 36.43 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . F 2 128.859 128.767 190.405 1 35.83 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . F 2 127.631 129.27 190.271 1 34.77 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #