data_6FHL # _model_server_result.job_id afs0KaTpeJPbBuCSGQsyXQ _model_server_result.datetime_utc '2024-10-19 12:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6FHL # _exptl.entry_id 6FHL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FHL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 I N N ? 2 L N N ? 2 O N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O2B ADP . A ADP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 G MG MG . A MG 402 1_555 H O3 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 I O2B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 J MG MG . B MG 402 1_555 K O3 PO4 . B PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 L O2B ADP . C ADP 401 1_555 M MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 M MG MG . C MG 402 1_555 N O3 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc7 O O2B ADP . D ADP 401 1_555 P MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 P MG MG . D MG 402 1_555 Q O3 PO4 . D PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 R O2B ADP . E ADP 401 1_555 S MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 S MG MG . E MG 402 1_555 T O3 PO4 . E PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FHL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ADP A 1 401 376 ADP ADP . G 3 MG A 1 402 377 MG MG . H 4 PO4 A 1 403 378 PO4 PO4 . I 2 ADP B 1 401 376 ADP ADP . J 3 MG B 1 402 377 MG MG . K 4 PO4 B 1 403 378 PO4 PO4 . L 2 ADP C 1 401 376 ADP ADP . M 3 MG C 1 402 377 MG MG . N 4 PO4 C 1 403 378 PO4 PO4 . O 2 ADP D 1 401 376 ADP ADP . P 3 MG D 1 402 377 MG MG . Q 4 PO4 D 1 403 378 PO4 PO4 . R 2 ADP E 1 401 376 ADP ADP . S 3 MG E 1 402 377 MG MG . T 4 PO4 E 1 403 378 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 2 158.125 140.984 166.631 1 35.09 ? PB ADP 401 B 1 HETATM 2 O O1B ADP . . . I 2 158.935 140.161 165.672 1 35.66 ? O1B ADP 401 B 1 HETATM 3 O O2B ADP . . . I 2 158.88 141.118 167.978 1 32.23 ? O2B ADP 401 B 1 HETATM 4 O O3B ADP . . . I 2 156.68 140.684 166.728 1 38.34 ? O3B ADP 401 B 1 HETATM 5 P PA ADP . . . I 2 159.072 143.498 166.422 1 28.36 ? PA ADP 401 B 1 HETATM 6 O O1A ADP . . . I 2 160.47 142.986 166.2 1 34.15 ? O1A ADP 401 B 1 HETATM 7 O O2A ADP . . . I 2 158.76 144.013 167.79 1 34.24 ? O2A ADP 401 B 1 HETATM 8 O O3A ADP . . . I 2 158.05 142.408 166.072 1 29.33 ? O3A ADP 401 B 1 HETATM 9 O O5' ADP . . . I 2 158.729 144.638 165.411 1 30 ? O5' ADP 401 B 1 HETATM 10 C C5' ADP . . . I 2 157.897 144.322 164.317 1 31.89 ? C5' ADP 401 B 1 HETATM 11 C C4' ADP . . . I 2 156.631 145.166 164.363 1 32.06 ? C4' ADP 401 B 1 HETATM 12 O O4' ADP . . . I 2 156.942 146.503 164.712 1 35.83 ? O4' ADP 401 B 1 HETATM 13 C C3' ADP . . . I 2 155.965 145.264 163.016 1 30.91 ? C3' ADP 401 B 1 HETATM 14 O O3' ADP . . . I 2 154.561 145.486 163.076 1 33.92 ? O3' ADP 401 B 1 HETATM 15 C C2' ADP . . . I 2 156.584 146.467 162.477 1 33.71 ? C2' ADP 401 B 1 HETATM 16 O O2' ADP . . . I 2 155.751 147.014 161.507 1 36.49 ? O2' ADP 401 B 1 HETATM 17 C C1' ADP . . . I 2 156.64 147.372 163.639 1 32 ? C1' ADP 401 B 1 HETATM 18 N N9 ADP . . . I 2 157.696 148.343 163.41 1 32.49 ? N9 ADP 401 B 1 HETATM 19 C C8 ADP . . . I 2 158.982 148.081 163.215 1 35.24 ? C8 ADP 401 B 1 HETATM 20 N N7 ADP . . . I 2 159.694 149.214 163.021 1 35.08 ? N7 ADP 401 B 1 HETATM 21 C C5 ADP . . . I 2 158.817 150.219 163.096 1 32.32 ? C5 ADP 401 B 1 HETATM 22 C C6 ADP . . . I 2 158.864 151.679 162.976 1 34.65 ? C6 ADP 401 B 1 HETATM 23 N N6 ADP . . . I 2 159.999 152.346 162.729 1 37.61 ? N6 ADP 401 B 1 HETATM 24 N N1 ADP . . . I 2 157.72 152.341 163.123 1 33.39 ? N1 ADP 401 B 1 HETATM 25 C C2 ADP . . . I 2 156.571 151.711 163.367 1 32.35 ? C2 ADP 401 B 1 HETATM 26 N N3 ADP . . . I 2 156.424 150.397 163.488 1 30.64 ? N3 ADP 401 B 1 HETATM 27 C C4 ADP . . . I 2 157.503 149.624 163.358 1 30 ? C4 ADP 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #