data_6FI2 # _model_server_result.job_id KGkNFdFGV4bNunKAFaaPAQ _model_server_result.datetime_utc '2024-12-26 23:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fi2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6FI2 # _exptl.entry_id 6FI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FI2 _cell.length_a 94.68 _cell.length_b 94.68 _cell.length_c 78.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 DJB DJB C1 O1 . O4 HO4 . sing 2 ? 2 3 2 DJE DJB C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B DJB 1 B 1 DJB E 3 GLX 2 n B DJB 2 B 2 DJB E 4 GLX 2 n B DJE 3 B 3 DJE E 5 GLX # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 279 A CYS 279 1_555 A SG CYS 296 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf3 A SG CYS 364 A CYS 364 1_555 A SG CYS 400 A CYS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 B O4 DJB . B DJB 1 1_555 B C1 DJB . B DJB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 B O4 DJB . B DJB 2 1_555 B C1 DJE . B DJE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 300 n n C1 C3 MLI sing 301 n n C1 H11 MLI sing 302 n n C1 H12 MLI sing 303 n n C2 O6 MLI doub 304 n n C2 O7 MLI sing 305 n n C3 O8 MLI doub 306 n n C3 O9 MLI sing 307 n n # _atom_sites.entry_id 6FI2 _atom_sites.fract_transf_matrix[1][1] 0.010562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLI A 1 501 1 MLI MLI . D 4 HOH A 1 601 288 HOH HOH . D 4 HOH A 2 602 242 HOH HOH . D 4 HOH A 3 603 205 HOH HOH . D 4 HOH A 4 604 253 HOH HOH . D 4 HOH A 5 605 184 HOH HOH . D 4 HOH A 6 606 206 HOH HOH . D 4 HOH A 7 607 220 HOH HOH . D 4 HOH A 8 608 178 HOH HOH . D 4 HOH A 9 609 175 HOH HOH . D 4 HOH A 10 610 67 HOH HOH . D 4 HOH A 11 611 160 HOH HOH . D 4 HOH A 12 612 58 HOH HOH . D 4 HOH A 13 613 211 HOH HOH . D 4 HOH A 14 614 149 HOH HOH . D 4 HOH A 15 615 267 HOH HOH . D 4 HOH A 16 616 260 HOH HOH . D 4 HOH A 17 617 87 HOH HOH . D 4 HOH A 18 618 66 HOH HOH . D 4 HOH A 19 619 18 HOH HOH . D 4 HOH A 20 620 256 HOH HOH . D 4 HOH A 21 621 26 HOH HOH . D 4 HOH A 22 622 21 HOH HOH . D 4 HOH A 23 623 89 HOH HOH . D 4 HOH A 24 624 124 HOH HOH . D 4 HOH A 25 625 265 HOH HOH . D 4 HOH A 26 626 44 HOH HOH . D 4 HOH A 27 627 257 HOH HOH . D 4 HOH A 28 628 29 HOH HOH . D 4 HOH A 29 629 145 HOH HOH . D 4 HOH A 30 630 232 HOH HOH . D 4 HOH A 31 631 275 HOH HOH . D 4 HOH A 32 632 20 HOH HOH . D 4 HOH A 33 633 80 HOH HOH . D 4 HOH A 34 634 48 HOH HOH . D 4 HOH A 35 635 279 HOH HOH . D 4 HOH A 36 636 216 HOH HOH . D 4 HOH A 37 637 177 HOH HOH . D 4 HOH A 38 638 100 HOH HOH . D 4 HOH A 39 639 271 HOH HOH . D 4 HOH A 40 640 197 HOH HOH . D 4 HOH A 41 641 14 HOH HOH . D 4 HOH A 42 642 62 HOH HOH . D 4 HOH A 43 643 198 HOH HOH . D 4 HOH A 44 644 72 HOH HOH . D 4 HOH A 45 645 47 HOH HOH . D 4 HOH A 46 646 135 HOH HOH . D 4 HOH A 47 647 199 HOH HOH . D 4 HOH A 48 648 54 HOH HOH . D 4 HOH A 49 649 137 HOH HOH . D 4 HOH A 50 650 186 HOH HOH . D 4 HOH A 51 651 234 HOH HOH . D 4 HOH A 52 652 22 HOH HOH . D 4 HOH A 53 653 51 HOH HOH . D 4 HOH A 54 654 33 HOH HOH . D 4 HOH A 55 655 27 HOH HOH . D 4 HOH A 56 656 83 HOH HOH . D 4 HOH A 57 657 183 HOH HOH . D 4 HOH A 58 658 11 HOH HOH . D 4 HOH A 59 659 217 HOH HOH . D 4 HOH A 60 660 128 HOH HOH . D 4 HOH A 61 661 180 HOH HOH . D 4 HOH A 62 662 140 HOH HOH . D 4 HOH A 63 663 103 HOH HOH . D 4 HOH A 64 664 52 HOH HOH . D 4 HOH A 65 665 70 HOH HOH . D 4 HOH A 66 666 192 HOH HOH . D 4 HOH A 67 667 227 HOH HOH . D 4 HOH A 68 668 60 HOH HOH . D 4 HOH A 69 669 116 HOH HOH . D 4 HOH A 70 670 117 HOH HOH . D 4 HOH A 71 671 238 HOH HOH . D 4 HOH A 72 672 281 HOH HOH . D 4 HOH A 73 673 108 HOH HOH . D 4 HOH A 74 674 144 HOH HOH . D 4 HOH A 75 675 97 HOH HOH . D 4 HOH A 76 676 185 HOH HOH . D 4 HOH A 77 677 94 HOH HOH . D 4 HOH A 78 678 121 HOH HOH . D 4 HOH A 79 679 179 HOH HOH . D 4 HOH A 80 680 25 HOH HOH . D 4 HOH A 81 681 214 HOH HOH . D 4 HOH A 82 682 46 HOH HOH . D 4 HOH A 83 683 7 HOH HOH . D 4 HOH A 84 684 147 HOH HOH . D 4 HOH A 85 685 10 HOH HOH . D 4 HOH A 86 686 91 HOH HOH . D 4 HOH A 87 687 188 HOH HOH . D 4 HOH A 88 688 41 HOH HOH . D 4 HOH A 89 689 152 HOH HOH . D 4 HOH A 90 690 138 HOH HOH . D 4 HOH A 91 691 125 HOH HOH . D 4 HOH A 92 692 37 HOH HOH . D 4 HOH A 93 693 193 HOH HOH . D 4 HOH A 94 694 8 HOH HOH . D 4 HOH A 95 695 174 HOH HOH . D 4 HOH A 96 696 35 HOH HOH . D 4 HOH A 97 697 3 HOH HOH . D 4 HOH A 98 698 13 HOH HOH . D 4 HOH A 99 699 43 HOH HOH . D 4 HOH A 100 700 31 HOH HOH . D 4 HOH A 101 701 129 HOH HOH . D 4 HOH A 102 702 61 HOH HOH . D 4 HOH A 103 703 187 HOH HOH . D 4 HOH A 104 704 172 HOH HOH . D 4 HOH A 105 705 222 HOH HOH . D 4 HOH A 106 706 16 HOH HOH . D 4 HOH A 107 707 92 HOH HOH . D 4 HOH A 108 708 55 HOH HOH . D 4 HOH A 109 709 19 HOH HOH . D 4 HOH A 110 710 161 HOH HOH . D 4 HOH A 111 711 64 HOH HOH . D 4 HOH A 112 712 15 HOH HOH . D 4 HOH A 113 713 34 HOH HOH . D 4 HOH A 114 714 38 HOH HOH . D 4 HOH A 115 715 143 HOH HOH . D 4 HOH A 116 716 6 HOH HOH . D 4 HOH A 117 717 201 HOH HOH . D 4 HOH A 118 718 212 HOH HOH . D 4 HOH A 119 719 79 HOH HOH . D 4 HOH A 120 720 12 HOH HOH . D 4 HOH A 121 721 236 HOH HOH . D 4 HOH A 122 722 76 HOH HOH . D 4 HOH A 123 723 250 HOH HOH . D 4 HOH A 124 724 266 HOH HOH . D 4 HOH A 125 725 118 HOH HOH . D 4 HOH A 126 726 213 HOH HOH . D 4 HOH A 127 727 158 HOH HOH . D 4 HOH A 128 728 203 HOH HOH . D 4 HOH A 129 729 115 HOH HOH . D 4 HOH A 130 730 90 HOH HOH . D 4 HOH A 131 731 96 HOH HOH . D 4 HOH A 132 732 154 HOH HOH . D 4 HOH A 133 733 130 HOH HOH . D 4 HOH A 134 734 49 HOH HOH . D 4 HOH A 135 735 195 HOH HOH . D 4 HOH A 136 736 23 HOH HOH . D 4 HOH A 137 737 259 HOH HOH . D 4 HOH A 138 738 9 HOH HOH . D 4 HOH A 139 739 268 HOH HOH . D 4 HOH A 140 740 285 HOH HOH . D 4 HOH A 141 741 150 HOH HOH . D 4 HOH A 142 742 40 HOH HOH . D 4 HOH A 143 743 32 HOH HOH . D 4 HOH A 144 744 77 HOH HOH . D 4 HOH A 145 745 261 HOH HOH . D 4 HOH A 146 746 191 HOH HOH . D 4 HOH A 147 747 249 HOH HOH . D 4 HOH A 148 748 85 HOH HOH . D 4 HOH A 149 749 219 HOH HOH . D 4 HOH A 150 750 30 HOH HOH . D 4 HOH A 151 751 274 HOH HOH . D 4 HOH A 152 752 258 HOH HOH . D 4 HOH A 153 753 106 HOH HOH . D 4 HOH A 154 754 2 HOH HOH . D 4 HOH A 155 755 36 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 39 HOH HOH . D 4 HOH A 158 758 235 HOH HOH . D 4 HOH A 159 759 123 HOH HOH . D 4 HOH A 160 760 208 HOH HOH . D 4 HOH A 161 761 17 HOH HOH . D 4 HOH A 162 762 204 HOH HOH . D 4 HOH A 163 763 181 HOH HOH . D 4 HOH A 164 764 65 HOH HOH . D 4 HOH A 165 765 45 HOH HOH . D 4 HOH A 166 766 50 HOH HOH . D 4 HOH A 167 767 189 HOH HOH . D 4 HOH A 168 768 231 HOH HOH . D 4 HOH A 169 769 57 HOH HOH . D 4 HOH A 170 770 209 HOH HOH . D 4 HOH A 171 771 283 HOH HOH . D 4 HOH A 172 772 280 HOH HOH . D 4 HOH A 173 773 99 HOH HOH . D 4 HOH A 174 774 86 HOH HOH . D 4 HOH A 175 775 28 HOH HOH . D 4 HOH A 176 776 233 HOH HOH . D 4 HOH A 177 777 287 HOH HOH . D 4 HOH A 178 778 254 HOH HOH . D 4 HOH A 179 779 102 HOH HOH . D 4 HOH A 180 780 113 HOH HOH . D 4 HOH A 181 781 59 HOH HOH . D 4 HOH A 182 782 146 HOH HOH . D 4 HOH A 183 783 73 HOH HOH . D 4 HOH A 184 784 207 HOH HOH . D 4 HOH A 185 785 131 HOH HOH . D 4 HOH A 186 786 153 HOH HOH . D 4 HOH A 187 787 119 HOH HOH . D 4 HOH A 188 788 63 HOH HOH . D 4 HOH A 189 789 120 HOH HOH . D 4 HOH A 190 790 133 HOH HOH . D 4 HOH A 191 791 53 HOH HOH . D 4 HOH A 192 792 229 HOH HOH . D 4 HOH A 193 793 88 HOH HOH . D 4 HOH A 194 794 126 HOH HOH . D 4 HOH A 195 795 276 HOH HOH . D 4 HOH A 196 796 111 HOH HOH . D 4 HOH A 197 797 81 HOH HOH . D 4 HOH A 198 798 127 HOH HOH . D 4 HOH A 199 799 75 HOH HOH . D 4 HOH A 200 800 69 HOH HOH . D 4 HOH A 201 801 56 HOH HOH . D 4 HOH A 202 802 42 HOH HOH . D 4 HOH A 203 803 104 HOH HOH . D 4 HOH A 204 804 210 HOH HOH . D 4 HOH A 205 805 142 HOH HOH . D 4 HOH A 206 806 272 HOH HOH . D 4 HOH A 207 807 277 HOH HOH . D 4 HOH A 208 808 71 HOH HOH . D 4 HOH A 209 809 148 HOH HOH . D 4 HOH A 210 810 84 HOH HOH . D 4 HOH A 211 811 240 HOH HOH . D 4 HOH A 212 812 68 HOH HOH . D 4 HOH A 213 813 101 HOH HOH . D 4 HOH A 214 814 95 HOH HOH . D 4 HOH A 215 815 173 HOH HOH . D 4 HOH A 216 816 109 HOH HOH . D 4 HOH A 217 817 215 HOH HOH . D 4 HOH A 218 818 171 HOH HOH . D 4 HOH A 219 819 112 HOH HOH . D 4 HOH A 220 820 98 HOH HOH . D 4 HOH A 221 821 168 HOH HOH . D 4 HOH A 222 822 134 HOH HOH . D 4 HOH A 223 823 169 HOH HOH . D 4 HOH A 224 824 228 HOH HOH . D 4 HOH A 225 825 194 HOH HOH . D 4 HOH A 226 826 284 HOH HOH . D 4 HOH A 227 827 255 HOH HOH . D 4 HOH A 228 828 110 HOH HOH . D 4 HOH A 229 829 167 HOH HOH . D 4 HOH A 230 830 225 HOH HOH . D 4 HOH A 231 831 226 HOH HOH . D 4 HOH A 232 832 107 HOH HOH . D 4 HOH A 233 833 244 HOH HOH . D 4 HOH A 234 834 246 HOH HOH . D 4 HOH A 235 835 151 HOH HOH . D 4 HOH A 236 836 182 HOH HOH . D 4 HOH A 237 837 289 HOH HOH . D 4 HOH A 238 838 136 HOH HOH . D 4 HOH A 239 839 170 HOH HOH . D 4 HOH A 240 840 74 HOH HOH . D 4 HOH A 241 841 196 HOH HOH . D 4 HOH A 242 842 218 HOH HOH . D 4 HOH A 243 843 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 3 12.269 30.109 49.198 1 34.49 ? C1 MLI 501 A 1 HETATM 2 C C2 MLI . . . C 3 11.136 30.689 48.361 1 32.44 ? C2 MLI 501 A 1 HETATM 3 C C3 MLI . . . C 3 13.604 30.68 48.759 1 35.24 ? C3 MLI 501 A 1 HETATM 4 O O6 MLI . . . C 3 10.264 29.926 47.934 1 34.03 ? O6 MLI 501 A 1 HETATM 5 O O7 MLI . . . C 3 11.085 31.908 48.108 1 32.1 ? O7 MLI 501 A 1 HETATM 6 O O8 MLI . . . C 3 14.027 30.423 47.612 1 38.62 ? O8 MLI 501 A 1 HETATM 7 O O9 MLI . . . C 3 14.24 31.401 49.564 1 40.64 ? O9 MLI 501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #