data_6FI4 # _model_server_result.job_id s5wKUdroX5aMFqz16zi6wg _model_server_result.datetime_utc '2025-02-05 14:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6FI4 # _exptl.entry_id 6FI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.339 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-2-(diphenylmethyl)pyrrolidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FI4 _cell.length_a 62.38 _cell.length_b 148.46 _cell.length_c 78.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PRO 1 B PRO 4 1_555 B N SEP 2 B SEP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C SEP 2 B SEP 5 1_555 B N LEU 3 B LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C PRO 4 B PRO 7 1_555 B N DVA 5 B DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C DVA 5 B DVA 8 1_555 F N10 60H . B 60H 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 A O GLY 4 A GLY -1 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A OE2 GLU 7 A GLU 2 1_555 E NA NA . A NA 303 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 A O ALA 208 A ALA 203 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A OD1 ASP 209 A ASP 204 1_555 C CA CA . A CA 301 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 C CA CA . A CA 301 1_555 G O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 C CA CA . A CA 301 1_555 G O HOH . A HOH 442 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 C CA CA . A CA 301 1_555 G O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc8 C CA CA . A CA 301 1_555 G O HOH . A HOH 486 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc9 E NA NA . A NA 303 1_555 G O HOH . A HOH 436 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc10 E NA NA . A NA 303 1_555 G O HOH . A HOH 454 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc11 E NA NA . A NA 303 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 E NA NA . A NA 303 1_555 G O HOH . A HOH 525 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C17 H19 N' _chem_comp.formula_weight 237.339 _chem_comp.id 60H _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-2-(diphenylmethyl)pyrrolidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C49 C50 60H doub 1 n y C49 C48 60H sing 2 n y C50 C51 60H sing 3 n y C48 C47 60H doub 4 n y C51 C46 60H doub 5 n y C47 C46 60H sing 6 n y C46 C39 60H sing 7 n n C39 C40 60H sing 8 n n C39 C38 60H sing 9 n n C41 C40 60H doub 10 n y C41 C42 60H sing 11 n y C40 C45 60H sing 12 n y C38 N10 60H sing 13 n n C38 C37 60H sing 14 n n N10 C35 60H sing 15 n n C42 C43 60H doub 16 n y C45 C44 60H doub 17 n y C43 C44 60H sing 18 n y C37 C36 60H sing 19 n n C35 C36 60H sing 20 n n N10 H1 60H sing 21 n n C38 H66 60H sing 22 n n C39 H67 60H sing 23 n n C51 H77 60H sing 24 n n C50 H76 60H sing 25 n n C49 H75 60H sing 26 n n C48 H74 60H sing 27 n n C47 H73 60H sing 28 n n C45 H72 60H sing 29 n n C44 H71 60H sing 30 n n C43 H70 60H sing 31 n n C42 H69 60H sing 32 n n C41 H68 60H sing 33 n n C37 H65 60H sing 34 n n C37 H64 60H sing 35 n n C36 H63 60H sing 36 n n C36 H62 60H sing 37 n n C35 H60 60H sing 38 n n C35 H61 60H sing 39 n n # _atom_sites.entry_id 6FI4 _atom_sites.fract_transf_matrix[1][1] 0.016031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 CL A 1 302 2 CL CL . E 5 NA A 1 303 3 NA NA . F 6 60H B 1 101 9 60H BZH . G 7 HOH A 1 401 62 HOH HOH . G 7 HOH A 2 402 56 HOH HOH . G 7 HOH A 3 403 90 HOH HOH . G 7 HOH A 4 404 15 HOH HOH . G 7 HOH A 5 405 83 HOH HOH . G 7 HOH A 6 406 94 HOH HOH . G 7 HOH A 7 407 141 HOH HOH . G 7 HOH A 8 408 121 HOH HOH . G 7 HOH A 9 409 6 HOH HOH . G 7 HOH A 10 410 63 HOH HOH . G 7 HOH A 11 411 26 HOH HOH . G 7 HOH A 12 412 1 HOH HOH . G 7 HOH A 13 413 44 HOH HOH . G 7 HOH A 14 414 99 HOH HOH . G 7 HOH A 15 415 33 HOH HOH . G 7 HOH A 16 416 82 HOH HOH . G 7 HOH A 17 417 8 HOH HOH . G 7 HOH A 18 418 41 HOH HOH . G 7 HOH A 19 419 37 HOH HOH . G 7 HOH A 20 420 111 HOH HOH . G 7 HOH A 21 421 60 HOH HOH . G 7 HOH A 22 422 35 HOH HOH . G 7 HOH A 23 423 12 HOH HOH . G 7 HOH A 24 424 67 HOH HOH . G 7 HOH A 25 425 17 HOH HOH . G 7 HOH A 26 426 24 HOH HOH . G 7 HOH A 27 427 140 HOH HOH . G 7 HOH A 28 428 21 HOH HOH . G 7 HOH A 29 429 108 HOH HOH . G 7 HOH A 30 430 34 HOH HOH . G 7 HOH A 31 431 23 HOH HOH . G 7 HOH A 32 432 36 HOH HOH . G 7 HOH A 33 433 2 HOH HOH . G 7 HOH A 34 434 3 HOH HOH . G 7 HOH A 35 435 13 HOH HOH . G 7 HOH A 36 436 31 HOH HOH . G 7 HOH A 37 437 32 HOH HOH . G 7 HOH A 38 438 105 HOH HOH . G 7 HOH A 39 439 9 HOH HOH . G 7 HOH A 40 440 92 HOH HOH . G 7 HOH A 41 441 19 HOH HOH . G 7 HOH A 42 442 80 HOH HOH . G 7 HOH A 43 443 54 HOH HOH . G 7 HOH A 44 444 27 HOH HOH . G 7 HOH A 45 445 117 HOH HOH . G 7 HOH A 46 446 5 HOH HOH . G 7 HOH A 47 447 45 HOH HOH . G 7 HOH A 48 448 59 HOH HOH . G 7 HOH A 49 449 65 HOH HOH . G 7 HOH A 50 450 25 HOH HOH . G 7 HOH A 51 451 48 HOH HOH . G 7 HOH A 52 452 49 HOH HOH . G 7 HOH A 53 453 46 HOH HOH . G 7 HOH A 54 454 96 HOH HOH . G 7 HOH A 55 455 10 HOH HOH . G 7 HOH A 56 456 47 HOH HOH . G 7 HOH A 57 457 143 HOH HOH . G 7 HOH A 58 458 16 HOH HOH . G 7 HOH A 59 459 84 HOH HOH . G 7 HOH A 60 460 110 HOH HOH . G 7 HOH A 61 461 20 HOH HOH . G 7 HOH A 62 462 116 HOH HOH . G 7 HOH A 63 463 51 HOH HOH . G 7 HOH A 64 464 93 HOH HOH . G 7 HOH A 65 465 87 HOH HOH . G 7 HOH A 66 466 127 HOH HOH . G 7 HOH A 67 467 22 HOH HOH . G 7 HOH A 68 468 7 HOH HOH . G 7 HOH A 69 469 134 HOH HOH . G 7 HOH A 70 470 18 HOH HOH . G 7 HOH A 71 471 14 HOH HOH . G 7 HOH A 72 472 77 HOH HOH . G 7 HOH A 73 473 28 HOH HOH . G 7 HOH A 74 474 11 HOH HOH . G 7 HOH A 75 475 29 HOH HOH . G 7 HOH A 76 476 75 HOH HOH . G 7 HOH A 77 477 4 HOH HOH . G 7 HOH A 78 478 119 HOH HOH . G 7 HOH A 79 479 88 HOH HOH . G 7 HOH A 80 480 104 HOH HOH . G 7 HOH A 81 481 74 HOH HOH . G 7 HOH A 82 482 61 HOH HOH . G 7 HOH A 83 483 100 HOH HOH . G 7 HOH A 84 484 58 HOH HOH . G 7 HOH A 85 485 133 HOH HOH . G 7 HOH A 86 486 115 HOH HOH . G 7 HOH A 87 487 55 HOH HOH . G 7 HOH A 88 488 145 HOH HOH . G 7 HOH A 89 489 81 HOH HOH . G 7 HOH A 90 490 109 HOH HOH . G 7 HOH A 91 491 40 HOH HOH . G 7 HOH A 92 492 128 HOH HOH . G 7 HOH A 93 493 135 HOH HOH . G 7 HOH A 94 494 64 HOH HOH . G 7 HOH A 95 495 66 HOH HOH . G 7 HOH A 96 496 73 HOH HOH . G 7 HOH A 97 497 123 HOH HOH . G 7 HOH A 98 498 144 HOH HOH . G 7 HOH A 99 499 91 HOH HOH . G 7 HOH A 100 500 72 HOH HOH . G 7 HOH A 101 501 137 HOH HOH . G 7 HOH A 102 502 50 HOH HOH . G 7 HOH A 103 503 112 HOH HOH . G 7 HOH A 104 504 78 HOH HOH . G 7 HOH A 105 505 98 HOH HOH . G 7 HOH A 106 506 107 HOH HOH . G 7 HOH A 107 507 103 HOH HOH . G 7 HOH A 108 508 69 HOH HOH . G 7 HOH A 109 509 38 HOH HOH . G 7 HOH A 110 510 132 HOH HOH . G 7 HOH A 111 511 124 HOH HOH . G 7 HOH A 112 512 130 HOH HOH . G 7 HOH A 113 513 142 HOH HOH . G 7 HOH A 114 514 70 HOH HOH . G 7 HOH A 115 515 43 HOH HOH . G 7 HOH A 116 516 79 HOH HOH . G 7 HOH A 117 517 113 HOH HOH . G 7 HOH A 118 518 120 HOH HOH . G 7 HOH A 119 519 68 HOH HOH . G 7 HOH A 120 520 42 HOH HOH . G 7 HOH A 121 521 39 HOH HOH . G 7 HOH A 122 522 125 HOH HOH . G 7 HOH A 123 523 101 HOH HOH . G 7 HOH A 124 524 76 HOH HOH . G 7 HOH A 125 525 95 HOH HOH . G 7 HOH A 126 526 71 HOH HOH . G 7 HOH A 127 527 57 HOH HOH . G 7 HOH A 128 528 53 HOH HOH . H 7 HOH B 1 201 52 HOH HOH . H 7 HOH B 2 202 30 HOH HOH . H 7 HOH B 3 203 86 HOH HOH . H 7 HOH B 4 204 146 HOH HOH . H 7 HOH B 5 205 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 60H . . . F 6 -2.016 -15.333 16.83 1 69.76 ? N10 60H 101 B 1 HETATM 2 C C38 60H . . . F 6 -2.45 -15.919 18.182 1 78.58 ? C38 60H 101 B 1 HETATM 3 C C39 60H . . . F 6 -3.344 -14.925 19.081 1 86.93 ? C39 60H 101 B 1 HETATM 4 C C46 60H . . . F 6 -3.78 -15.633 20.485 1 87.35 ? C46 60H 101 B 1 HETATM 5 C C51 60H . . . F 6 -3.776 -17.046 20.667 1 86.77 ? C51 60H 101 B 1 HETATM 6 C C50 60H . . . F 6 -4.162 -17.648 21.896 1 86.14 ? C50 60H 101 B 1 HETATM 7 C C49 60H . . . F 6 -4.57 -16.839 22.973 1 86.78 ? C49 60H 101 B 1 HETATM 8 C C48 60H . . . F 6 -4.589 -15.448 22.819 1 86.87 ? C48 60H 101 B 1 HETATM 9 C C47 60H . . . F 6 -4.199 -14.863 21.59 1 87.77 ? C47 60H 101 B 1 HETATM 10 C C40 60H . . . F 6 -2.607 -13.543 19.256 1 92.59 ? C40 60H 101 B 1 HETATM 11 C C45 60H . . . F 6 -2.827 -12.51 18.321 1 94.18 ? C45 60H 101 B 1 HETATM 12 C C44 60H . . . F 6 -2.18 -11.252 18.437 1 94.55 ? C44 60H 101 B 1 HETATM 13 C C43 60H . . . F 6 -1.286 -11.007 19.505 1 95.72 ? C43 60H 101 B 1 HETATM 14 C C42 60H . . . F 6 -1.048 -12.023 20.446 1 95.55 ? C42 60H 101 B 1 HETATM 15 C C41 60H . . . F 6 -1.703 -13.282 20.32 1 94.25 ? C41 60H 101 B 1 HETATM 16 C C37 60H . . . F 6 -1.21 -16.401 18.85 1 73.89 ? C37 60H 101 B 1 HETATM 17 C C36 60H . . . F 6 -0.106 -15.497 18.367 1 74.16 ? C36 60H 101 B 1 HETATM 18 C C35 60H . . . F 6 -0.476 -15.173 16.943 1 74.34 ? C35 60H 101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #