data_6FID # _model_server_result.job_id 9WV7qmKWLK8uVvn9QrChHg _model_server_result.datetime_utc '2024-11-06 20:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6FID # _exptl.entry_id 6FID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FID _cell.length_a 59.947 _cell.length_b 64.107 _cell.length_c 69.694 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FID _atom_sites.fract_transf_matrix[1][1] 0.016681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 3 BEN A 1 302 302 BEN BEN . D 4 SO4 A 1 303 1001 SO4 SO4 . E 4 SO4 A 1 304 1102 SO4 SO4 . F 4 SO4 A 1 305 1103 SO4 SO4 . G 5 HOH A 1 401 2134 HOH HOH . G 5 HOH A 2 402 2031 HOH HOH . G 5 HOH A 3 403 2049 HOH HOH . G 5 HOH A 4 404 2045 HOH HOH . G 5 HOH A 5 405 2070 HOH HOH . G 5 HOH A 6 406 2033 HOH HOH . G 5 HOH A 7 407 2105 HOH HOH . G 5 HOH A 8 408 2100 HOH HOH . G 5 HOH A 9 409 2140 HOH HOH . G 5 HOH A 10 410 2104 HOH HOH . G 5 HOH A 11 411 2076 HOH HOH . G 5 HOH A 12 412 2007 HOH HOH . G 5 HOH A 13 413 2128 HOH HOH . G 5 HOH A 14 414 2027 HOH HOH . G 5 HOH A 15 415 2005 HOH HOH . G 5 HOH A 16 416 2002 HOH HOH . G 5 HOH A 17 417 2047 HOH HOH . G 5 HOH A 18 418 2072 HOH HOH . G 5 HOH A 19 419 2068 HOH HOH . G 5 HOH A 20 420 2124 HOH HOH . G 5 HOH A 21 421 2101 HOH HOH . G 5 HOH A 22 422 2129 HOH HOH . G 5 HOH A 23 423 2147 HOH HOH . G 5 HOH A 24 424 2149 HOH HOH . G 5 HOH A 25 425 2034 HOH HOH . G 5 HOH A 26 426 2159 HOH HOH . G 5 HOH A 27 427 2152 HOH HOH . G 5 HOH A 28 428 2067 HOH HOH . G 5 HOH A 29 429 2013 HOH HOH . G 5 HOH A 30 430 2037 HOH HOH . G 5 HOH A 31 431 2143 HOH HOH . G 5 HOH A 32 432 2003 HOH HOH . G 5 HOH A 33 433 2158 HOH HOH . G 5 HOH A 34 434 2150 HOH HOH . G 5 HOH A 35 435 2023 HOH HOH . G 5 HOH A 36 436 2113 HOH HOH . G 5 HOH A 37 437 2106 HOH HOH . G 5 HOH A 38 438 2044 HOH HOH . G 5 HOH A 39 439 2071 HOH HOH . G 5 HOH A 40 440 2018 HOH HOH . G 5 HOH A 41 441 2131 HOH HOH . G 5 HOH A 42 442 2112 HOH HOH . G 5 HOH A 43 443 2117 HOH HOH . G 5 HOH A 44 444 2038 HOH HOH . G 5 HOH A 45 445 2107 HOH HOH . G 5 HOH A 46 446 2012 HOH HOH . G 5 HOH A 47 447 2035 HOH HOH . G 5 HOH A 48 448 2010 HOH HOH . G 5 HOH A 49 449 2086 HOH HOH . G 5 HOH A 50 450 2009 HOH HOH . G 5 HOH A 51 451 2138 HOH HOH . G 5 HOH A 52 452 2132 HOH HOH . G 5 HOH A 53 453 2115 HOH HOH . G 5 HOH A 54 454 2109 HOH HOH . G 5 HOH A 55 455 2092 HOH HOH . G 5 HOH A 56 456 2095 HOH HOH . G 5 HOH A 57 457 2155 HOH HOH . G 5 HOH A 58 458 2073 HOH HOH . G 5 HOH A 59 459 2103 HOH HOH . G 5 HOH A 60 460 2011 HOH HOH . G 5 HOH A 61 461 2169 HOH HOH . G 5 HOH A 62 462 2078 HOH HOH . G 5 HOH A 63 463 2163 HOH HOH . G 5 HOH A 64 464 2161 HOH HOH . G 5 HOH A 65 465 2096 HOH HOH . G 5 HOH A 66 466 2032 HOH HOH . G 5 HOH A 67 467 2154 HOH HOH . G 5 HOH A 68 468 2051 HOH HOH . G 5 HOH A 69 469 2055 HOH HOH . G 5 HOH A 70 470 2030 HOH HOH . G 5 HOH A 71 471 2001 HOH HOH . G 5 HOH A 72 472 2080 HOH HOH . G 5 HOH A 73 473 2025 HOH HOH . G 5 HOH A 74 474 2127 HOH HOH . G 5 HOH A 75 475 2028 HOH HOH . G 5 HOH A 76 476 2130 HOH HOH . G 5 HOH A 77 477 2081 HOH HOH . G 5 HOH A 78 478 2083 HOH HOH . G 5 HOH A 79 479 2102 HOH HOH . G 5 HOH A 80 480 2039 HOH HOH . G 5 HOH A 81 481 2088 HOH HOH . G 5 HOH A 82 482 2065 HOH HOH . G 5 HOH A 83 483 2058 HOH HOH . G 5 HOH A 84 484 2097 HOH HOH . G 5 HOH A 85 485 2017 HOH HOH . G 5 HOH A 86 486 2108 HOH HOH . G 5 HOH A 87 487 2057 HOH HOH . G 5 HOH A 88 488 2008 HOH HOH . G 5 HOH A 89 489 2098 HOH HOH . G 5 HOH A 90 490 2123 HOH HOH . G 5 HOH A 91 491 2157 HOH HOH . G 5 HOH A 92 492 2043 HOH HOH . G 5 HOH A 93 493 2141 HOH HOH . G 5 HOH A 94 494 2042 HOH HOH . G 5 HOH A 95 495 2084 HOH HOH . G 5 HOH A 96 496 2137 HOH HOH . G 5 HOH A 97 497 2022 HOH HOH . G 5 HOH A 98 498 2066 HOH HOH . G 5 HOH A 99 499 2054 HOH HOH . G 5 HOH A 100 500 2111 HOH HOH . G 5 HOH A 101 501 2099 HOH HOH . G 5 HOH A 102 502 2087 HOH HOH . G 5 HOH A 103 503 2121 HOH HOH . G 5 HOH A 104 504 2064 HOH HOH . G 5 HOH A 105 505 2139 HOH HOH . G 5 HOH A 106 506 2061 HOH HOH . G 5 HOH A 107 507 2151 HOH HOH . G 5 HOH A 108 508 2091 HOH HOH . G 5 HOH A 109 509 2090 HOH HOH . G 5 HOH A 110 510 2016 HOH HOH . G 5 HOH A 111 511 2110 HOH HOH . G 5 HOH A 112 512 2036 HOH HOH . G 5 HOH A 113 513 2168 HOH HOH . G 5 HOH A 114 514 2050 HOH HOH . G 5 HOH A 115 515 2145 HOH HOH . G 5 HOH A 116 516 2165 HOH HOH . G 5 HOH A 117 517 2060 HOH HOH . G 5 HOH A 118 518 2014 HOH HOH . G 5 HOH A 119 519 2082 HOH HOH . G 5 HOH A 120 520 2094 HOH HOH . G 5 HOH A 121 521 2029 HOH HOH . G 5 HOH A 122 522 2114 HOH HOH . G 5 HOH A 123 523 2041 HOH HOH . G 5 HOH A 124 524 2170 HOH HOH . G 5 HOH A 125 525 2125 HOH HOH . G 5 HOH A 126 526 2167 HOH HOH . G 5 HOH A 127 527 2075 HOH HOH . G 5 HOH A 128 528 2063 HOH HOH . G 5 HOH A 129 529 2024 HOH HOH . G 5 HOH A 130 530 2077 HOH HOH . G 5 HOH A 131 531 2135 HOH HOH . G 5 HOH A 132 532 2026 HOH HOH . G 5 HOH A 133 533 2164 HOH HOH . G 5 HOH A 134 534 2020 HOH HOH . G 5 HOH A 135 535 2059 HOH HOH . G 5 HOH A 136 536 2056 HOH HOH . G 5 HOH A 137 537 2053 HOH HOH . G 5 HOH A 138 538 2120 HOH HOH . G 5 HOH A 139 539 2118 HOH HOH . G 5 HOH A 140 540 2079 HOH HOH . G 5 HOH A 141 541 2062 HOH HOH . G 5 HOH A 142 542 2006 HOH HOH . G 5 HOH A 143 543 2085 HOH HOH . G 5 HOH A 144 544 2148 HOH HOH . G 5 HOH A 145 545 2093 HOH HOH . G 5 HOH A 146 546 2015 HOH HOH . G 5 HOH A 147 547 2136 HOH HOH . G 5 HOH A 148 548 2069 HOH HOH . G 5 HOH A 149 549 2144 HOH HOH . G 5 HOH A 150 550 2119 HOH HOH . G 5 HOH A 151 551 2122 HOH HOH . G 5 HOH A 152 552 2046 HOH HOH . G 5 HOH A 153 553 2133 HOH HOH . G 5 HOH A 154 554 2052 HOH HOH . G 5 HOH A 155 555 2074 HOH HOH . G 5 HOH A 156 556 2089 HOH HOH . G 5 HOH A 157 557 2048 HOH HOH . G 5 HOH A 158 558 2156 HOH HOH . G 5 HOH A 159 559 2160 HOH HOH . G 5 HOH A 160 560 2040 HOH HOH . G 5 HOH A 161 561 2021 HOH HOH . G 5 HOH A 162 562 2153 HOH HOH . G 5 HOH A 163 563 2004 HOH HOH . G 5 HOH A 164 564 2162 HOH HOH . G 5 HOH A 165 565 2019 HOH HOH . G 5 HOH A 166 566 2116 HOH HOH . G 5 HOH A 167 567 2126 HOH HOH . G 5 HOH A 168 568 2142 HOH HOH . G 5 HOH A 169 569 2166 HOH HOH . G 5 HOH A 170 570 2146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 41.932 3.442 8.436 1 22.97 ? C1 BEN 302 A 1 HETATM 2 C C2 BEN . . . C 3 41.275 4.064 9.514 1 25.95 ? C2 BEN 302 A 1 HETATM 3 C C3 BEN . . . C 3 41.866 4.143 10.775 1 25.5 ? C3 BEN 302 A 1 HETATM 4 C C4 BEN . . . C 3 43.13 3.602 10.984 1 26.14 ? C4 BEN 302 A 1 HETATM 5 C C5 BEN . . . C 3 43.79 2.98 9.93 1 24.66 ? C5 BEN 302 A 1 HETATM 6 C C6 BEN . . . C 3 43.202 2.9 8.669 1 23.08 ? C6 BEN 302 A 1 HETATM 7 C C BEN . . . C 3 41.284 3.352 7.067 1 23.03 ? C BEN 302 A 1 HETATM 8 N N1 BEN . . . C 3 41.94 3.106 6.015 1 21.68 ? N1 BEN 302 A 1 HETATM 9 N N2 BEN . . . C 3 39.969 3.525 6.897 1 22.07 ? N2 BEN 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #