data_6FIF # _model_server_result.job_id mSBa2AiV8D0umWjVxmSBzA _model_server_result.datetime_utc '2025-07-30 13:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":903}' # _entry.id 6FIF # _exptl.entry_id 6FIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.65 _cell.angle_gamma 90 _cell.entry_id 6FIF _cell.length_a 119.684 _cell.length_b 67.569 _cell.length_c 151.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1772 NAG 2 n B NAG 2 B 2 NAG A 1773 NAG 2 n C NAG 1 C 1 NAG A 1775 NAG 2 n C NAG 2 C 2 NAG A 1776 NAG 3 n D NAG 1 D 1 NAG A 1778 NAG 3 n D NAG 2 D 2 NAG A 1789 NAG 3 n D FUC 3 D 3 FUC A 1790 FUC 4 n E NAG 1 E 1 NAG A 1786 NAG 4 n E NAG 2 E 2 NAG A 1787 NAG 4 n E BMA 3 E 3 BMA A 1788 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 62 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf2 A SG CYS 120 A CYS 120 1_555 A SG CYS 147 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 A SG CYS 199 A CYS 199 1_555 A SG CYS 221 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf4 A SG CYS 244 A CYS 244 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf5 A SG CYS 315 A CYS 315 1_555 A SG CYS 339 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 411 A CYS 411 1_555 A SG CYS 439 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? disulf ? disulf7 A SG CYS 609 A CYS 609 1_555 A SG CYS 635 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf8 A SG CYS 763 A CYS 763 1_555 A SG CYS 770 A CYS 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? covale ? covale1 A ND2 ASN 112 A ASN 112 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 233 A ASN 233 1_555 F C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 275 A ASN 275 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 351 A ASN 351 1_555 G C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 A ND2 ASN 510 A ASN 510 1_555 I C1 NAG . A NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 A ND2 ASN 545 A ASN 545 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale7 A ND2 ASN 573 A ASN 573 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 A ND2 ASN 653 A ASN 653 1_555 H C1 NAG . A NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale9 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale12 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 293 n n C1 O1 NAG sing 294 n n C1 O5 NAG sing 295 n n C1 H1 NAG sing 296 n n C2 C3 NAG sing 297 n n C2 N2 NAG sing 298 n n C2 H2 NAG sing 299 n n C3 C4 NAG sing 300 n n C3 O3 NAG sing 301 n n C3 H3 NAG sing 302 n n C4 C5 NAG sing 303 n n C4 O4 NAG sing 304 n n C4 H4 NAG sing 305 n n C5 C6 NAG sing 306 n n C5 O5 NAG sing 307 n n C5 H5 NAG sing 308 n n C6 O6 NAG sing 309 n n C6 H61 NAG sing 310 n n C6 H62 NAG sing 311 n n C7 C8 NAG sing 312 n n C7 N2 NAG sing 313 n n C7 O7 NAG doub 314 n n C8 H81 NAG sing 315 n n C8 H82 NAG sing 316 n n C8 H83 NAG sing 317 n n N2 HN2 NAG sing 318 n n O1 HO1 NAG sing 319 n n O3 HO3 NAG sing 320 n n O4 HO4 NAG sing 321 n n O6 HO6 NAG sing 322 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FIF _atom_sites.fract_transf_matrix[1][1] 0.008355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001572 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 903 1774 NAG NAG . G 5 NAG A 1 906 1777 NAG NAG . H 5 NAG A 1 910 1780 NAG NAG . I 5 NAG A 1 911 1781 NAG NAG . J 6 EDO A 1 915 1 EDO EDO . K 7 HOH A 1 1001 15 HOH HOH . K 7 HOH A 2 1002 18 HOH HOH . K 7 HOH A 3 1003 3 HOH HOH . K 7 HOH A 4 1004 5 HOH HOH . K 7 HOH A 5 1005 1 HOH HOH . K 7 HOH A 6 1006 7 HOH HOH . K 7 HOH A 7 1007 14 HOH HOH . K 7 HOH A 8 1008 21 HOH HOH . K 7 HOH A 9 1009 23 HOH HOH . K 7 HOH A 10 1010 8 HOH HOH . K 7 HOH A 11 1011 6 HOH HOH . K 7 HOH A 12 1012 13 HOH HOH . K 7 HOH A 13 1013 25 HOH HOH . K 7 HOH A 14 1014 10 HOH HOH . K 7 HOH A 15 1015 2 HOH HOH . K 7 HOH A 16 1016 20 HOH HOH . K 7 HOH A 17 1017 19 HOH HOH . K 7 HOH A 18 1018 17 HOH HOH . K 7 HOH A 19 1019 12 HOH HOH . K 7 HOH A 20 1020 9 HOH HOH . K 7 HOH A 21 1021 16 HOH HOH . K 7 HOH A 22 1022 27 HOH HOH . K 7 HOH A 23 1023 22 HOH HOH . K 7 HOH A 24 1024 11 HOH HOH . K 7 HOH A 25 1025 4 HOH HOH . K 7 HOH A 26 1026 24 HOH HOH . K 7 HOH A 27 1027 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 -11.546 23.478 -32.887 1 103.14 ? C1 NAG 903 A 1 HETATM 2 C C2 NAG . . . F 5 -12.055 24.4 -33.987 1 108.99 ? C2 NAG 903 A 1 HETATM 3 C C3 NAG . . . F 5 -12.279 23.624 -35.291 1 129.05 ? C3 NAG 903 A 1 HETATM 4 C C4 NAG . . . F 5 -11.103 22.695 -35.655 1 136.78 ? C4 NAG 903 A 1 HETATM 5 C C5 NAG . . . F 5 -10.745 21.808 -34.444 1 130.37 ? C5 NAG 903 A 1 HETATM 6 C C6 NAG . . . F 5 -9.535 20.894 -34.653 1 130.69 ? C6 NAG 903 A 1 HETATM 7 C C7 NAG . . . F 5 -13.446 26.242 -33.114 1 105.52 ? C7 NAG 903 A 1 HETATM 8 C C8 NAG . . . F 5 -14.843 26.55 -32.603 1 101.28 ? C8 NAG 903 A 1 HETATM 9 N N2 NAG . . . F 5 -13.304 24.965 -33.497 1 96.65 ? N2 NAG 903 A 1 HETATM 10 O O3 NAG . . . F 5 -12.521 24.56 -36.352 1 124.57 ? O3 NAG 903 A 1 HETATM 11 O O4 NAG . . . F 5 -11.432 21.925 -36.837 1 140.66 ? O4 NAG 903 A 1 HETATM 12 O O5 NAG . . . F 5 -10.452 22.678 -33.348 1 118.59 ? O5 NAG 903 A 1 HETATM 13 O O6 NAG . . . F 5 -8.332 21.668 -34.832 1 119.67 ? O6 NAG 903 A 1 HETATM 14 O O7 NAG . . . F 5 -12.529 27.086 -33.179 1 92.71 ? O7 NAG 903 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #