data_6FIQ # _model_server_result.job_id jklsah0jheqrWb9VSPQA7Q _model_server_result.datetime_utc '2024-11-01 01:34:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fiq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6FIQ # _exptl.entry_id 6FIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.536 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-(1~{H}-indazol-5-ylcarbonyl)-5'-methoxy-1'-[2-oxidanylidene-2-[(2~{S})-2-(trifluoromethyl)pyrrolidin-1-yl]ethyl]spiro[piperidine-4,3'-pyrrolo[3,2-b]pyridine]-2'-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FIQ _cell.length_a 59.934 _cell.length_b 71.668 _cell.length_c 72.644 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H27 F3 N6 O4' _chem_comp.formula_weight 556.536 _chem_comp.id DJW _chem_comp.mon_nstd_flag . _chem_comp.name "1-(1~{H}-indazol-5-ylcarbonyl)-5'-methoxy-1'-[2-oxidanylidene-2-[(2~{S})-2-(trifluoromethyl)pyrrolidin-1-yl]ethyl]spiro[piperidine-4,3'-pyrrolo[3,2-b]pyridine]-2'-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F14 C12 DJW sing 83 n n F13 C12 DJW sing 84 n n C12 F15 DJW sing 85 n n C12 C11 DJW sing 86 n n C11 C16 DJW sing 87 n n C11 N10 DJW sing 88 n n C16 C17 DJW sing 89 n n O19 C9 DJW doub 90 n n N35 C36 DJW doub 91 n y N35 N34 DJW sing 92 n y N10 C9 DJW sing 93 n n N10 C18 DJW sing 94 n n C36 C37 DJW sing 95 n y C17 C18 DJW sing 96 n n C9 C8 DJW sing 97 n n N34 C33 DJW sing 98 n y C37 C33 DJW doub 99 n y C37 C38 DJW sing 100 n y C25 C26 DJW sing 101 n n C25 C22 DJW sing 102 n n C33 C32 DJW sing 103 n y C4 C5 DJW doub 104 n y C4 C3 DJW sing 105 n y C5 C6 DJW sing 106 n y O2 C3 DJW sing 107 n n O2 C1 DJW sing 108 n n C8 N7 DJW sing 109 n n C3 N24 DJW doub 110 n y C26 N27 DJW sing 111 n n C6 N7 DJW sing 112 n n C6 C23 DJW doub 113 n y C38 C30 DJW doub 114 n y N7 C20 DJW sing 115 n n N24 C23 DJW sing 116 n y O21 C20 DJW doub 117 n n C23 C22 DJW sing 118 n n C20 C22 DJW sing 119 n n C22 C40 DJW sing 120 n n C32 C31 DJW doub 121 n y C30 C31 DJW sing 122 n y C30 C28 DJW sing 123 n n N27 C28 DJW sing 124 n n N27 C39 DJW sing 125 n n C40 C39 DJW sing 126 n n C28 O29 DJW doub 127 n n C4 H1 DJW sing 128 n n C5 H2 DJW sing 129 n n C8 H3 DJW sing 130 n n C8 H4 DJW sing 131 n n C17 H5 DJW sing 132 n n C17 H6 DJW sing 133 n n C26 H7 DJW sing 134 n n C26 H8 DJW sing 135 n n C1 H9 DJW sing 136 n n C1 H10 DJW sing 137 n n C1 H11 DJW sing 138 n n C11 H12 DJW sing 139 n n C16 H13 DJW sing 140 n n C16 H14 DJW sing 141 n n C18 H15 DJW sing 142 n n C18 H16 DJW sing 143 n n C25 H17 DJW sing 144 n n C25 H18 DJW sing 145 n n C31 H19 DJW sing 146 n n C32 H20 DJW sing 147 n n N34 H21 DJW sing 148 n n C36 H22 DJW sing 149 n n C38 H23 DJW sing 150 n n C39 H24 DJW sing 151 n n C39 H25 DJW sing 152 n n C40 H26 DJW sing 153 n n C40 H27 DJW sing 154 n n # _atom_sites.entry_id 6FIQ _atom_sites.fract_transf_matrix[1][1] 0.016685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DJW A 1 1001 1 DJW LIG . C 3 CL A 1 1002 1 CL CL . D 4 HOH A 1 1101 106 HOH HOH . D 4 HOH A 2 1102 41 HOH HOH . D 4 HOH A 3 1103 78 HOH HOH . D 4 HOH A 4 1104 63 HOH HOH . D 4 HOH A 5 1105 119 HOH HOH . D 4 HOH A 6 1106 22 HOH HOH . D 4 HOH A 7 1107 101 HOH HOH . D 4 HOH A 8 1108 13 HOH HOH . D 4 HOH A 9 1109 31 HOH HOH . D 4 HOH A 10 1110 90 HOH HOH . D 4 HOH A 11 1111 48 HOH HOH . D 4 HOH A 12 1112 44 HOH HOH . D 4 HOH A 13 1113 137 HOH HOH . D 4 HOH A 14 1114 50 HOH HOH . D 4 HOH A 15 1115 59 HOH HOH . D 4 HOH A 16 1116 116 HOH HOH . D 4 HOH A 17 1117 29 HOH HOH . D 4 HOH A 18 1118 96 HOH HOH . D 4 HOH A 19 1119 33 HOH HOH . D 4 HOH A 20 1120 58 HOH HOH . D 4 HOH A 21 1121 100 HOH HOH . D 4 HOH A 22 1122 19 HOH HOH . D 4 HOH A 23 1123 32 HOH HOH . D 4 HOH A 24 1124 35 HOH HOH . D 4 HOH A 25 1125 107 HOH HOH . D 4 HOH A 26 1126 51 HOH HOH . D 4 HOH A 27 1127 72 HOH HOH . D 4 HOH A 28 1128 87 HOH HOH . D 4 HOH A 29 1129 1 HOH HOH . D 4 HOH A 30 1130 104 HOH HOH . D 4 HOH A 31 1131 126 HOH HOH . D 4 HOH A 32 1132 34 HOH HOH . D 4 HOH A 33 1133 64 HOH HOH . D 4 HOH A 34 1134 40 HOH HOH . D 4 HOH A 35 1135 86 HOH HOH . D 4 HOH A 36 1136 56 HOH HOH . D 4 HOH A 37 1137 82 HOH HOH . D 4 HOH A 38 1138 15 HOH HOH . D 4 HOH A 39 1139 9 HOH HOH . D 4 HOH A 40 1140 129 HOH HOH . D 4 HOH A 41 1141 123 HOH HOH . D 4 HOH A 42 1142 42 HOH HOH . D 4 HOH A 43 1143 98 HOH HOH . D 4 HOH A 44 1144 88 HOH HOH . D 4 HOH A 45 1145 30 HOH HOH . D 4 HOH A 46 1146 97 HOH HOH . D 4 HOH A 47 1147 94 HOH HOH . D 4 HOH A 48 1148 57 HOH HOH . D 4 HOH A 49 1149 52 HOH HOH . D 4 HOH A 50 1150 95 HOH HOH . D 4 HOH A 51 1151 114 HOH HOH . D 4 HOH A 52 1152 54 HOH HOH . D 4 HOH A 53 1153 26 HOH HOH . D 4 HOH A 54 1154 17 HOH HOH . D 4 HOH A 55 1155 60 HOH HOH . D 4 HOH A 56 1156 24 HOH HOH . D 4 HOH A 57 1157 74 HOH HOH . D 4 HOH A 58 1158 21 HOH HOH . D 4 HOH A 59 1159 120 HOH HOH . D 4 HOH A 60 1160 38 HOH HOH . D 4 HOH A 61 1161 105 HOH HOH . D 4 HOH A 62 1162 128 HOH HOH . D 4 HOH A 63 1163 45 HOH HOH . D 4 HOH A 64 1164 83 HOH HOH . D 4 HOH A 65 1165 11 HOH HOH . D 4 HOH A 66 1166 93 HOH HOH . D 4 HOH A 67 1167 138 HOH HOH . D 4 HOH A 68 1168 43 HOH HOH . D 4 HOH A 69 1169 46 HOH HOH . D 4 HOH A 70 1170 2 HOH HOH . D 4 HOH A 71 1171 68 HOH HOH . D 4 HOH A 72 1172 133 HOH HOH . D 4 HOH A 73 1173 142 HOH HOH . D 4 HOH A 74 1174 6 HOH HOH . D 4 HOH A 75 1175 4 HOH HOH . D 4 HOH A 76 1176 118 HOH HOH . D 4 HOH A 77 1177 10 HOH HOH . D 4 HOH A 78 1178 14 HOH HOH . D 4 HOH A 79 1179 66 HOH HOH . D 4 HOH A 80 1180 102 HOH HOH . D 4 HOH A 81 1181 23 HOH HOH . D 4 HOH A 82 1182 148 HOH HOH . D 4 HOH A 83 1183 108 HOH HOH . D 4 HOH A 84 1184 136 HOH HOH . D 4 HOH A 85 1185 139 HOH HOH . D 4 HOH A 86 1186 36 HOH HOH . D 4 HOH A 87 1187 39 HOH HOH . D 4 HOH A 88 1188 89 HOH HOH . D 4 HOH A 89 1189 125 HOH HOH . D 4 HOH A 90 1190 28 HOH HOH . D 4 HOH A 91 1191 77 HOH HOH . D 4 HOH A 92 1192 61 HOH HOH . D 4 HOH A 93 1193 8 HOH HOH . D 4 HOH A 94 1194 113 HOH HOH . D 4 HOH A 95 1195 67 HOH HOH . D 4 HOH A 96 1196 49 HOH HOH . D 4 HOH A 97 1197 3 HOH HOH . D 4 HOH A 98 1198 62 HOH HOH . D 4 HOH A 99 1199 145 HOH HOH . D 4 HOH A 100 1200 103 HOH HOH . D 4 HOH A 101 1201 92 HOH HOH . D 4 HOH A 102 1202 37 HOH HOH . D 4 HOH A 103 1203 84 HOH HOH . D 4 HOH A 104 1204 147 HOH HOH . D 4 HOH A 105 1205 143 HOH HOH . D 4 HOH A 106 1206 76 HOH HOH . D 4 HOH A 107 1207 73 HOH HOH . D 4 HOH A 108 1208 5 HOH HOH . D 4 HOH A 109 1209 20 HOH HOH . D 4 HOH A 110 1210 69 HOH HOH . D 4 HOH A 111 1211 135 HOH HOH . D 4 HOH A 112 1212 25 HOH HOH . D 4 HOH A 113 1213 99 HOH HOH . D 4 HOH A 114 1214 18 HOH HOH . D 4 HOH A 115 1215 111 HOH HOH . D 4 HOH A 116 1216 112 HOH HOH . D 4 HOH A 117 1217 75 HOH HOH . D 4 HOH A 118 1218 12 HOH HOH . D 4 HOH A 119 1219 132 HOH HOH . D 4 HOH A 120 1220 110 HOH HOH . D 4 HOH A 121 1221 124 HOH HOH . D 4 HOH A 122 1222 70 HOH HOH . D 4 HOH A 123 1223 122 HOH HOH . D 4 HOH A 124 1224 7 HOH HOH . D 4 HOH A 125 1225 117 HOH HOH . D 4 HOH A 126 1226 27 HOH HOH . D 4 HOH A 127 1227 16 HOH HOH . D 4 HOH A 128 1228 79 HOH HOH . D 4 HOH A 129 1229 130 HOH HOH . D 4 HOH A 130 1230 85 HOH HOH . D 4 HOH A 131 1231 47 HOH HOH . D 4 HOH A 132 1232 91 HOH HOH . D 4 HOH A 133 1233 53 HOH HOH . D 4 HOH A 134 1234 80 HOH HOH . D 4 HOH A 135 1235 55 HOH HOH . D 4 HOH A 136 1236 131 HOH HOH . D 4 HOH A 137 1237 71 HOH HOH . D 4 HOH A 138 1238 65 HOH HOH . D 4 HOH A 139 1239 140 HOH HOH . D 4 HOH A 140 1240 115 HOH HOH . D 4 HOH A 141 1241 144 HOH HOH . D 4 HOH A 142 1242 81 HOH HOH . D 4 HOH A 143 1243 127 HOH HOH . D 4 HOH A 144 1244 121 HOH HOH . D 4 HOH A 145 1245 149 HOH HOH . D 4 HOH A 146 1246 134 HOH HOH . D 4 HOH A 147 1247 109 HOH HOH . D 4 HOH A 148 1248 146 HOH HOH . D 4 HOH A 149 1249 141 HOH HOH . D 4 HOH A 150 1250 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DJW . . . B 2 -25.935 -0.44 -1.455 1 38.18 ? C4 DJW 1001 A 1 HETATM 2 C C5 DJW . . . B 2 -25.802 0.944 -1.405 1 34.26 ? C5 DJW 1001 A 1 HETATM 3 C C6 DJW . . . B 2 -24.53 1.452 -1.189 1 32.78 ? C6 DJW 1001 A 1 HETATM 4 C C8 DJW . . . B 2 -24.808 4.018 -1.354 1 31.75 ? C8 DJW 1001 A 1 HETATM 5 C C17 DJW . . . B 2 -27.924 6.584 -2.881 1 35.82 ? C17 DJW 1001 A 1 HETATM 6 C C20 DJW . . . B 2 -22.647 2.784 -0.979 1 31.72 ? C20 DJW 1001 A 1 HETATM 7 C C22 DJW . . . B 2 -22.193 1.328 -0.726 1 32.09 ? C22 DJW 1001 A 1 HETATM 8 C C26 DJW . . . B 2 -19.73 1.504 -1.218 1 31.52 ? C26 DJW 1001 A 1 HETATM 9 C C28 DJW . . . B 2 -18.547 0.344 0.748 1 35.53 ? C28 DJW 1001 A 1 HETATM 10 C C1 DJW . . . B 2 -23.875 -3.409 -1.247 1 33.9 ? C1 DJW 1001 A 1 HETATM 11 O O2 DJW . . . B 2 -25.01 -2.557 -1.367 1 36.91 ? O2 DJW 1001 A 1 HETATM 12 C C3 DJW . . . B 2 -24.797 -1.228 -1.294 1 33.5 ? C3 DJW 1001 A 1 HETATM 13 N N7 DJW . . . B 2 -24.059 2.792 -1.104 1 31.42 ? N7 DJW 1001 A 1 HETATM 14 C C9 DJW . . . B 2 -24.981 4.285 -2.85 1 32.38 ? C9 DJW 1001 A 1 HETATM 15 N N10 DJW . . . B 2 -25.963 5.224 -3.144 1 32.97 ? N10 DJW 1001 A 1 HETATM 16 C C11 DJW . . . B 2 -26.343 5.606 -4.5 1 35.27 ? C11 DJW 1001 A 1 HETATM 17 C C12 DJW . . . B 2 -25.408 6.723 -5.127 1 37.9 ? C12 DJW 1001 A 1 HETATM 18 F F13 DJW . . . B 2 -24.092 6.38 -5.168 1 35.55 ? F13 DJW 1001 A 1 HETATM 19 F F14 DJW . . . B 2 -25.753 6.983 -6.414 1 36.64 ? F14 DJW 1001 A 1 HETATM 20 F F15 DJW . . . B 2 -25.474 7.911 -4.501 1 35.05 ? F15 DJW 1001 A 1 HETATM 21 C C16 DJW . . . B 2 -27.797 6.111 -4.333 1 36.67 ? C16 DJW 1001 A 1 HETATM 22 C C18 DJW . . . B 2 -26.749 5.939 -2.12 1 36.51 ? C18 DJW 1001 A 1 HETATM 23 O O19 DJW . . . B 2 -24.323 3.764 -3.736 1 31.45 ? O19 DJW 1001 A 1 HETATM 24 O O21 DJW . . . B 2 -22.013 3.808 -1.062 1 30.71 ? O21 DJW 1001 A 1 HETATM 25 C C23 DJW . . . B 2 -23.449 0.562 -1.02 1 33.93 ? C23 DJW 1001 A 1 HETATM 26 N N24 DJW . . . B 2 -23.537 -0.782 -1.068 1 32.22 ? N24 DJW 1001 A 1 HETATM 27 C C25 DJW . . . B 2 -21.075 0.902 -1.666 1 31.53 ? C25 DJW 1001 A 1 HETATM 28 N N27 DJW . . . B 2 -19.533 1.181 0.22 1 31.15 ? N27 DJW 1001 A 1 HETATM 29 O O29 DJW . . . B 2 -18.427 0.271 1.984 1 33.7 ? O29 DJW 1001 A 1 HETATM 30 C C30 DJW . . . B 2 -17.611 -0.402 -0.13 1 32.62 ? C30 DJW 1001 A 1 HETATM 31 C C31 DJW . . . B 2 -16.232 -0.271 0.157 1 35.24 ? C31 DJW 1001 A 1 HETATM 32 C C32 DJW . . . B 2 -15.287 -0.937 -0.588 1 35.24 ? C32 DJW 1001 A 1 HETATM 33 C C33 DJW . . . B 2 -15.751 -1.736 -1.64 1 36.7 ? C33 DJW 1001 A 1 HETATM 34 N N34 DJW . . . B 2 -15.086 -2.499 -2.593 1 37.42 ? N34 DJW 1001 A 1 HETATM 35 N N35 DJW . . . B 2 -15.98 -3.096 -3.447 1 36.18 ? N35 DJW 1001 A 1 HETATM 36 C C36 DJW . . . B 2 -17.224 -2.745 -3.073 1 33.59 ? C36 DJW 1001 A 1 HETATM 37 C C37 DJW . . . B 2 -17.146 -1.879 -1.93 1 34.63 ? C37 DJW 1001 A 1 HETATM 38 C C38 DJW . . . B 2 -18.079 -1.207 -1.158 1 34.63 ? C38 DJW 1001 A 1 HETATM 39 C C39 DJW . . . B 2 -20.518 1.783 1.098 1 32.68 ? C39 DJW 1001 A 1 HETATM 40 C C40 DJW . . . B 2 -21.842 1.114 0.741 1 33.52 ? C40 DJW 1001 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #