data_6FIR
#
_model_server_result.job_id            Q_izu6RXdZsnwu07NCSlFw 
_model_server_result.datetime_utc      '2024-11-15 19:47:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":605}' 
#
_entry.id    6FIR 
#
_exptl.entry_id    6FIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6FIR 
_cell.length_a            90.93 
_cell.length_b            127.68 
_cell.length_c            130.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 90.93 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 90.93 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 71 A ASP 52 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc2 A O ASP 73 A ASP 54 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 A OD1 ASP 370 A ASP 351 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc4 B MG MG . A MG 601 1_555 M O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc5 B MG MG . A MG 601 1_555 M O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc6 B MG MG . A MG 601 1_555 M O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6FIR 
_atom_sites.fract_transf_matrix[1][1]    0.010997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 601 1 MG MG . 
C 3 SO4 A 1 602 1 SO4 SO4 . 
D 3 SO4 A 1 603 2 SO4 SO4 . 
E 3 SO4 A 1 604 3 SO4 SO4 . 
F 4 GOL A 1 605 1 GOL GOL . 
G 4 GOL A 1 606 2 GOL GOL . 
H 4 GOL A 1 607 3 GOL GOL . 
I 4 GOL A 1 608 4 GOL GOL . 
J 4 GOL A 1 609 5 GOL GOL . 
K 4 GOL A 1 610 6 GOL GOL . 
L 4 GOL A 1 611 7 GOL GOL . 
M 5 HOH A 1 701 33 HOH HOH . 
M 5 HOH A 2 702 70 HOH HOH . 
M 5 HOH A 3 703 4 HOH HOH . 
M 5 HOH A 4 704 21 HOH HOH . 
M 5 HOH A 5 705 16 HOH HOH . 
M 5 HOH A 6 706 37 HOH HOH . 
M 5 HOH A 7 707 47 HOH HOH . 
M 5 HOH A 8 708 63 HOH HOH . 
M 5 HOH A 9 709 64 HOH HOH . 
M 5 HOH A 10 710 9 HOH HOH . 
M 5 HOH A 11 711 61 HOH HOH . 
M 5 HOH A 12 712 31 HOH HOH . 
M 5 HOH A 13 713 60 HOH HOH . 
M 5 HOH A 14 714 35 HOH HOH . 
M 5 HOH A 15 715 11 HOH HOH . 
M 5 HOH A 16 716 42 HOH HOH . 
M 5 HOH A 17 717 40 HOH HOH . 
M 5 HOH A 18 718 54 HOH HOH . 
M 5 HOH A 19 719 65 HOH HOH . 
M 5 HOH A 20 720 7 HOH HOH . 
M 5 HOH A 21 721 29 HOH HOH . 
M 5 HOH A 22 722 32 HOH HOH . 
M 5 HOH A 23 723 6 HOH HOH . 
M 5 HOH A 24 724 25 HOH HOH . 
M 5 HOH A 25 725 66 HOH HOH . 
M 5 HOH A 26 726 24 HOH HOH . 
M 5 HOH A 27 727 79 HOH HOH . 
M 5 HOH A 28 728 80 HOH HOH . 
M 5 HOH A 29 729 13 HOH HOH . 
M 5 HOH A 30 730 75 HOH HOH . 
M 5 HOH A 31 731 5 HOH HOH . 
M 5 HOH A 32 732 10 HOH HOH . 
M 5 HOH A 33 733 69 HOH HOH . 
M 5 HOH A 34 734 26 HOH HOH . 
M 5 HOH A 35 735 51 HOH HOH . 
M 5 HOH A 36 736 57 HOH HOH . 
M 5 HOH A 37 737 14 HOH HOH . 
M 5 HOH A 38 738 55 HOH HOH . 
M 5 HOH A 39 739 38 HOH HOH . 
M 5 HOH A 40 740 39 HOH HOH . 
M 5 HOH A 41 741 53 HOH HOH . 
M 5 HOH A 42 742 82 HOH HOH . 
M 5 HOH A 43 743 50 HOH HOH . 
M 5 HOH A 44 744 34 HOH HOH . 
M 5 HOH A 45 745 30 HOH HOH . 
M 5 HOH A 46 746 1 HOH HOH . 
M 5 HOH A 47 747 23 HOH HOH . 
M 5 HOH A 48 748 15 HOH HOH . 
M 5 HOH A 49 749 49 HOH HOH . 
M 5 HOH A 50 750 59 HOH HOH . 
M 5 HOH A 51 751 74 HOH HOH . 
M 5 HOH A 52 752 45 HOH HOH . 
M 5 HOH A 53 753 18 HOH HOH . 
M 5 HOH A 54 754 71 HOH HOH . 
M 5 HOH A 55 755 19 HOH HOH . 
M 5 HOH A 56 756 2 HOH HOH . 
M 5 HOH A 57 757 48 HOH HOH . 
M 5 HOH A 58 758 56 HOH HOH . 
M 5 HOH A 59 759 62 HOH HOH . 
M 5 HOH A 60 760 36 HOH HOH . 
M 5 HOH A 61 761 76 HOH HOH . 
M 5 HOH A 62 762 67 HOH HOH . 
M 5 HOH A 63 763 27 HOH HOH . 
M 5 HOH A 64 764 28 HOH HOH . 
M 5 HOH A 65 765 46 HOH HOH . 
M 5 HOH A 66 766 41 HOH HOH . 
M 5 HOH A 67 767 20 HOH HOH . 
M 5 HOH A 68 768 52 HOH HOH . 
M 5 HOH A 69 769 81 HOH HOH . 
M 5 HOH A 70 770 72 HOH HOH . 
M 5 HOH A 71 771 22 HOH HOH . 
M 5 HOH A 72 772 12 HOH HOH . 
M 5 HOH A 73 773 43 HOH HOH . 
M 5 HOH A 74 774 73 HOH HOH . 
M 5 HOH A 75 775 78 HOH HOH . 
M 5 HOH A 76 776 44 HOH HOH . 
M 5 HOH A 77 777 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 55.056 -33.396 -21.359 1 82.64 ? C1 GOL 605 A 1 
HETATM 2 O O1 GOL . . . F 4 54.332 -34.438 -21.935 1 82.52 ? O1 GOL 605 A 1 
HETATM 3 C C2 GOL . . . F 4 54.981 -32.229 -22.354 1 78.88 ? C2 GOL 605 A 1 
HETATM 4 O O2 GOL . . . F 4 56.135 -31.429 -22.333 1 76.46 ? O2 GOL 605 A 1 
HETATM 5 C C3 GOL . . . F 4 53.688 -31.474 -21.954 1 73.86 ? C3 GOL 605 A 1 
HETATM 6 O O3 GOL . . . F 4 53.005 -32.263 -21.009 1 58.97 ? O3 GOL 605 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#