data_6FJ6 # _model_server_result.job_id p7QIVFtRtZlVopFqP3IDuw _model_server_result.datetime_utc '2024-11-26 18:48:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6FJ6 # _exptl.entry_id 6FJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FJ6 _cell.length_a 57.951 _cell.length_b 57.951 _cell.length_c 150.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf9 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6FJ6 _atom_sites.fract_transf_matrix[1][1] 0.017256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 500 500 TLA TLA . C 3 GOL A 1 501 501 GOL GOL . D 3 GOL A 1 502 502 GOL GOL . E 3 GOL A 1 503 503 GOL GOL . F 3 GOL A 1 504 504 GOL GOL . G 4 HOH A 1 601 2078 HOH HOH . G 4 HOH A 2 602 2171 HOH HOH . G 4 HOH A 3 603 2066 HOH HOH . G 4 HOH A 4 604 2088 HOH HOH . G 4 HOH A 5 605 2159 HOH HOH . G 4 HOH A 6 606 2184 HOH HOH . G 4 HOH A 7 607 2130 HOH HOH . G 4 HOH A 8 608 2105 HOH HOH . G 4 HOH A 9 609 2178 HOH HOH . G 4 HOH A 10 610 2032 HOH HOH . G 4 HOH A 11 611 2196 HOH HOH . G 4 HOH A 12 612 2055 HOH HOH . G 4 HOH A 13 613 2110 HOH HOH . G 4 HOH A 14 614 2154 HOH HOH . G 4 HOH A 15 615 2099 HOH HOH . G 4 HOH A 16 616 2042 HOH HOH . G 4 HOH A 17 617 2135 HOH HOH . G 4 HOH A 18 618 2166 HOH HOH . G 4 HOH A 19 619 2057 HOH HOH . G 4 HOH A 20 620 2082 HOH HOH . G 4 HOH A 21 621 2137 HOH HOH . G 4 HOH A 22 622 2096 HOH HOH . G 4 HOH A 23 623 2069 HOH HOH . G 4 HOH A 24 624 2008 HOH HOH . G 4 HOH A 25 625 2114 HOH HOH . G 4 HOH A 26 626 2052 HOH HOH . G 4 HOH A 27 627 2015 HOH HOH . G 4 HOH A 28 628 2103 HOH HOH . G 4 HOH A 29 629 2142 HOH HOH . G 4 HOH A 30 630 2109 HOH HOH . G 4 HOH A 31 631 2005 HOH HOH . G 4 HOH A 32 632 2121 HOH HOH . G 4 HOH A 33 633 2030 HOH HOH . G 4 HOH A 34 634 2006 HOH HOH . G 4 HOH A 35 635 2183 HOH HOH . G 4 HOH A 36 636 2021 HOH HOH . G 4 HOH A 37 637 2050 HOH HOH . G 4 HOH A 38 638 2049 HOH HOH . G 4 HOH A 39 639 2023 HOH HOH . G 4 HOH A 40 640 2187 HOH HOH . G 4 HOH A 41 641 2024 HOH HOH . G 4 HOH A 42 642 2093 HOH HOH . G 4 HOH A 43 643 2031 HOH HOH . G 4 HOH A 44 644 2020 HOH HOH . G 4 HOH A 45 645 2074 HOH HOH . G 4 HOH A 46 646 2194 HOH HOH . G 4 HOH A 47 647 2160 HOH HOH . G 4 HOH A 48 648 2013 HOH HOH . G 4 HOH A 49 649 2033 HOH HOH . G 4 HOH A 50 650 2018 HOH HOH . G 4 HOH A 51 651 2017 HOH HOH . G 4 HOH A 52 652 2048 HOH HOH . G 4 HOH A 53 653 2047 HOH HOH . G 4 HOH A 54 654 2136 HOH HOH . G 4 HOH A 55 655 2041 HOH HOH . G 4 HOH A 56 656 2162 HOH HOH . G 4 HOH A 57 657 2004 HOH HOH . G 4 HOH A 58 658 2077 HOH HOH . G 4 HOH A 59 659 2001 HOH HOH . G 4 HOH A 60 660 2012 HOH HOH . G 4 HOH A 61 661 2095 HOH HOH . G 4 HOH A 62 662 2125 HOH HOH . G 4 HOH A 63 663 2038 HOH HOH . G 4 HOH A 64 664 2151 HOH HOH . G 4 HOH A 65 665 2029 HOH HOH . G 4 HOH A 66 666 2019 HOH HOH . G 4 HOH A 67 667 2002 HOH HOH . G 4 HOH A 68 668 2198 HOH HOH . G 4 HOH A 69 669 2025 HOH HOH . G 4 HOH A 70 670 2073 HOH HOH . G 4 HOH A 71 671 2016 HOH HOH . G 4 HOH A 72 672 2022 HOH HOH . G 4 HOH A 73 673 2037 HOH HOH . G 4 HOH A 74 674 2040 HOH HOH . G 4 HOH A 75 675 2065 HOH HOH . G 4 HOH A 76 676 2070 HOH HOH . G 4 HOH A 77 677 2091 HOH HOH . G 4 HOH A 78 678 2199 HOH HOH . G 4 HOH A 79 679 2115 HOH HOH . G 4 HOH A 80 680 2028 HOH HOH . G 4 HOH A 81 681 2083 HOH HOH . G 4 HOH A 82 682 2009 HOH HOH . G 4 HOH A 83 683 2059 HOH HOH . G 4 HOH A 84 684 2172 HOH HOH . G 4 HOH A 85 685 2075 HOH HOH . G 4 HOH A 86 686 2197 HOH HOH . G 4 HOH A 87 687 2071 HOH HOH . G 4 HOH A 88 688 2014 HOH HOH . G 4 HOH A 89 689 2081 HOH HOH . G 4 HOH A 90 690 2143 HOH HOH . G 4 HOH A 91 691 2007 HOH HOH . G 4 HOH A 92 692 2119 HOH HOH . G 4 HOH A 93 693 2102 HOH HOH . G 4 HOH A 94 694 2043 HOH HOH . G 4 HOH A 95 695 2145 HOH HOH . G 4 HOH A 96 696 2051 HOH HOH . G 4 HOH A 97 697 2132 HOH HOH . G 4 HOH A 98 698 2104 HOH HOH . G 4 HOH A 99 699 2062 HOH HOH . G 4 HOH A 100 700 2094 HOH HOH . G 4 HOH A 101 701 2157 HOH HOH . G 4 HOH A 102 702 2034 HOH HOH . G 4 HOH A 103 703 2141 HOH HOH . G 4 HOH A 104 704 2010 HOH HOH . G 4 HOH A 105 705 2076 HOH HOH . G 4 HOH A 106 706 2067 HOH HOH . G 4 HOH A 107 707 2039 HOH HOH . G 4 HOH A 108 708 2053 HOH HOH . G 4 HOH A 109 709 2045 HOH HOH . G 4 HOH A 110 710 2176 HOH HOH . G 4 HOH A 111 711 2080 HOH HOH . G 4 HOH A 112 712 2036 HOH HOH . G 4 HOH A 113 713 2035 HOH HOH . G 4 HOH A 114 714 2011 HOH HOH . G 4 HOH A 115 715 2054 HOH HOH . G 4 HOH A 116 716 2149 HOH HOH . G 4 HOH A 117 717 2046 HOH HOH . G 4 HOH A 118 718 2170 HOH HOH . G 4 HOH A 119 719 2090 HOH HOH . G 4 HOH A 120 720 2061 HOH HOH . G 4 HOH A 121 721 2063 HOH HOH . G 4 HOH A 122 722 2068 HOH HOH . G 4 HOH A 123 723 2060 HOH HOH . G 4 HOH A 124 724 2027 HOH HOH . G 4 HOH A 125 725 2089 HOH HOH . G 4 HOH A 126 726 2200 HOH HOH . G 4 HOH A 127 727 2177 HOH HOH . G 4 HOH A 128 728 2003 HOH HOH . G 4 HOH A 129 729 2195 HOH HOH . G 4 HOH A 130 730 2044 HOH HOH . G 4 HOH A 131 731 2165 HOH HOH . G 4 HOH A 132 732 2086 HOH HOH . G 4 HOH A 133 733 2111 HOH HOH . G 4 HOH A 134 734 2181 HOH HOH . G 4 HOH A 135 735 2150 HOH HOH . G 4 HOH A 136 736 2117 HOH HOH . G 4 HOH A 137 737 2064 HOH HOH . G 4 HOH A 138 738 2098 HOH HOH . G 4 HOH A 139 739 2127 HOH HOH . G 4 HOH A 140 740 2133 HOH HOH . G 4 HOH A 141 741 2101 HOH HOH . G 4 HOH A 142 742 2140 HOH HOH . G 4 HOH A 143 743 2026 HOH HOH . G 4 HOH A 144 744 2175 HOH HOH . G 4 HOH A 145 745 2118 HOH HOH . G 4 HOH A 146 746 2079 HOH HOH . G 4 HOH A 147 747 2182 HOH HOH . G 4 HOH A 148 748 2124 HOH HOH . G 4 HOH A 149 749 2100 HOH HOH . G 4 HOH A 150 750 2120 HOH HOH . G 4 HOH A 151 751 2146 HOH HOH . G 4 HOH A 152 752 2188 HOH HOH . G 4 HOH A 153 753 2122 HOH HOH . G 4 HOH A 154 754 2153 HOH HOH . G 4 HOH A 155 755 2163 HOH HOH . G 4 HOH A 156 756 2113 HOH HOH . G 4 HOH A 157 757 2139 HOH HOH . G 4 HOH A 158 758 2112 HOH HOH . G 4 HOH A 159 759 2156 HOH HOH . G 4 HOH A 160 760 2087 HOH HOH . G 4 HOH A 161 761 2190 HOH HOH . G 4 HOH A 162 762 2173 HOH HOH . G 4 HOH A 163 763 2092 HOH HOH . G 4 HOH A 164 764 2167 HOH HOH . G 4 HOH A 165 765 2107 HOH HOH . G 4 HOH A 166 766 2138 HOH HOH . G 4 HOH A 167 767 2128 HOH HOH . G 4 HOH A 168 768 2134 HOH HOH . G 4 HOH A 169 769 2174 HOH HOH . G 4 HOH A 170 770 2192 HOH HOH . G 4 HOH A 171 771 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 15.737 -13.571 3.774 1 40.9 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 3 14.747 -12.533 3.662 1 44.28 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 3 16.279 -13.659 2.362 1 35.16 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 3 15.449 -12.714 1.695 1 40.63 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 3 16.148 -15.03 1.707 1 27.83 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 3 17.248 -15.855 2.172 1 35.64 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #