data_6FJD
#
_model_server_result.job_id            cbGlcM91Gj9beeiL21oyKg 
_model_server_result.datetime_utc      '2024-10-18 02:26:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fjd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":806}' 
#
_entry.id    6FJD 
#
_exptl.entry_id    6FJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FJD 
_cell.length_a            83.404 
_cell.length_b            83.404 
_cell.length_c            208.254 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,P 1 1 
B,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 L N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 705 1_555 A SG CYS 66 A CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 104 A CYS 749 1_555 A SG CYS 114 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 B SG CYS 60 B CYS 705 1_555 B SG CYS 66 B CYS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 104 B CYS 749 1_555 B SG CYS 114 B CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6FJD 
_atom_sites.fract_transf_matrix[1][1]    0.01199 
_atom_sites.fract_transf_matrix[1][2]    0.006922 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 801 3 GOL GOL . 
D 2 GOL A 1 802 4 GOL GOL . 
E 2 GOL A 1 803 5 GOL GOL . 
F 2 GOL A 1 804 6 GOL GOL . 
G 2 GOL A 1 805 8 GOL GOL . 
H 2 GOL A 1 806 10 GOL GOL . 
I 3 SO4 A 1 807 2 SO4 SO4 . 
J 3 SO4 A 1 808 4 SO4 SO4 . 
K 4 PBU A 1 809 1 PBU PBU . 
L 2 GOL B 1 801 7 GOL GOL . 
M 2 GOL B 1 802 9 GOL GOL . 
N 3 SO4 B 1 803 1 SO4 SO4 . 
O 3 SO4 B 1 804 3 SO4 SO4 . 
P 5 HOH A 1 901 35 HOH HOH . 
P 5 HOH A 2 902 14 HOH HOH . 
P 5 HOH A 3 903 38 HOH HOH . 
P 5 HOH A 4 904 37 HOH HOH . 
P 5 HOH A 5 905 53 HOH HOH . 
P 5 HOH A 6 906 24 HOH HOH . 
P 5 HOH A 7 907 18 HOH HOH . 
P 5 HOH A 8 908 39 HOH HOH . 
P 5 HOH A 9 909 44 HOH HOH . 
P 5 HOH A 10 910 7 HOH HOH . 
P 5 HOH A 11 911 3 HOH HOH . 
P 5 HOH A 12 912 43 HOH HOH . 
P 5 HOH A 13 913 21 HOH HOH . 
P 5 HOH A 14 914 20 HOH HOH . 
P 5 HOH A 15 915 19 HOH HOH . 
P 5 HOH A 16 916 17 HOH HOH . 
P 5 HOH A 17 917 2 HOH HOH . 
P 5 HOH A 18 918 6 HOH HOH . 
P 5 HOH A 19 919 41 HOH HOH . 
P 5 HOH A 20 920 26 HOH HOH . 
P 5 HOH A 21 921 22 HOH HOH . 
P 5 HOH A 22 922 45 HOH HOH . 
P 5 HOH A 23 923 16 HOH HOH . 
P 5 HOH A 24 924 15 HOH HOH . 
P 5 HOH A 25 925 25 HOH HOH . 
P 5 HOH A 26 926 33 HOH HOH . 
P 5 HOH A 27 927 48 HOH HOH . 
P 5 HOH A 28 928 30 HOH HOH . 
P 5 HOH A 29 929 27 HOH HOH . 
P 5 HOH A 30 930 34 HOH HOH . 
P 5 HOH A 31 931 50 HOH HOH . 
Q 5 HOH B 1 901 28 HOH HOH . 
Q 5 HOH B 2 902 54 HOH HOH . 
Q 5 HOH B 3 903 32 HOH HOH . 
Q 5 HOH B 4 904 46 HOH HOH . 
Q 5 HOH B 5 905 29 HOH HOH . 
Q 5 HOH B 6 906 8 HOH HOH . 
Q 5 HOH B 7 907 51 HOH HOH . 
Q 5 HOH B 8 908 5 HOH HOH . 
Q 5 HOH B 9 909 36 HOH HOH . 
Q 5 HOH B 10 910 1 HOH HOH . 
Q 5 HOH B 11 911 23 HOH HOH . 
Q 5 HOH B 12 912 9 HOH HOH . 
Q 5 HOH B 13 913 40 HOH HOH . 
Q 5 HOH B 14 914 31 HOH HOH . 
Q 5 HOH B 15 915 10 HOH HOH . 
Q 5 HOH B 16 916 42 HOH HOH . 
Q 5 HOH B 17 917 52 HOH HOH . 
Q 5 HOH B 18 918 4 HOH HOH . 
Q 5 HOH B 19 919 13 HOH HOH . 
Q 5 HOH B 20 920 12 HOH HOH . 
Q 5 HOH B 21 921 47 HOH HOH . 
Q 5 HOH B 22 922 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 2 -17.297 -4.111 -1.539 1 63.15 ? C1 GOL 806 A 1 
HETATM 2 O O1 GOL . . . H 2 -18.09 -4.831 -0.574 1 38.44 ? O1 GOL 806 A 1 
HETATM 3 C C2 GOL . . . H 2 -17.853 -2.59 -1.762 1 39.57 ? C2 GOL 806 A 1 
HETATM 4 O O2 GOL . . . H 2 -17.656 -1.749 -0.665 1 61.69 ? O2 GOL 806 A 1 
HETATM 5 C C3 GOL . . . H 2 -17.082 -2.032 -2.987 1 34.9 ? C3 GOL 806 A 1 
HETATM 6 O O3 GOL . . . H 2 -17.55 -0.755 -3.223 1 22.69 ? O3 GOL 806 A 1 
HETATM 7 H H11 GOL . . . H 2 -16.364 -4.065 -1.278 1 75.78 ? H11 GOL 806 A 1 
HETATM 8 H H12 GOL . . . H 2 -17.292 -4.574 -2.391 1 75.78 ? H12 GOL 806 A 1 
HETATM 9 H HO1 GOL . . . H 2 -17.92 -5.656 -0.689 1 46.13 ? HO1 GOL 806 A 1 
HETATM 10 H H2 GOL . . . H 2 -18.809 -2.596 -1.926 1 47.49 ? H2 GOL 806 A 1 
HETATM 11 H HO2 GOL . . . H 2 -17.518 -0.964 -0.96 1 74.03 ? HO2 GOL 806 A 1 
HETATM 12 H H31 GOL . . . H 2 -17.196 -2.636 -3.738 1 41.88 ? H31 GOL 806 A 1 
HETATM 13 H H32 GOL . . . H 2 -16.13 -2.038 -2.798 1 41.88 ? H32 GOL 806 A 1 
HETATM 14 H HO3 GOL . . . H 2 -17.112 -0.453 -3.885 1 27.23 ? HO3 GOL 806 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#