data_6FK5 # _model_server_result.job_id BheHyvGwGKuqF-IhqdSfWg _model_server_result.datetime_utc '2024-11-09 02:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6FK5 # _exptl.entry_id 6FK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FK5 _cell.length_a 58.94 _cell.length_b 58.94 _cell.length_c 292.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 36 A GLU 34 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc2 C MG MG . A MG 301 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 C MG MG . A MG 301 1_555 G O HOH . B HOH 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc4 D MG MG . A MG 302 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? hydrog WATSON-CRICK hydrog1 B N3 DC 5 B DC 5 1_555 B N1 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 5 B DC 5 1_555 B O6 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 5 B DC 5 1_555 B N2 DG 17 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 6 B DT 6 1_555 B N1 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 6 B DT 6 1_555 B N6 DA 16 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 7 B DA 7 1_555 B N3 DT 15 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 7 B DA 7 1_555 B O4 DT 15 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 8 B DG 8 1_555 B N3 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 8 B DG 8 1_555 B O2 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 8 B DG 8 1_555 B N4 DC 14 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 9 B DC 9 1_555 B N1 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 9 B DC 9 1_555 B O6 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 9 B DC 9 1_555 B N2 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DA MISPAIR' hydrog14 B N3 DG 10 B DG 10 1_555 B N6 DA 12 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6FK5 _atom_sites.fract_transf_matrix[1][1] 0.016966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 1 MG MG . D 3 MG A 1 302 2 MG MG . E 4 MPD A 1 303 1 MPD MPD . F 5 HOH A 1 401 112 HOH HOH . F 5 HOH A 2 402 149 HOH HOH . F 5 HOH A 3 403 57 HOH HOH . F 5 HOH A 4 404 101 HOH HOH . F 5 HOH A 5 405 35 HOH HOH . F 5 HOH A 6 406 43 HOH HOH . F 5 HOH A 7 407 122 HOH HOH . F 5 HOH A 8 408 48 HOH HOH . F 5 HOH A 9 409 10 HOH HOH . F 5 HOH A 10 410 110 HOH HOH . F 5 HOH A 11 411 20 HOH HOH . F 5 HOH A 12 412 129 HOH HOH . F 5 HOH A 13 413 39 HOH HOH . F 5 HOH A 14 414 55 HOH HOH . F 5 HOH A 15 415 65 HOH HOH . F 5 HOH A 16 416 93 HOH HOH . F 5 HOH A 17 417 34 HOH HOH . F 5 HOH A 18 418 23 HOH HOH . F 5 HOH A 19 419 61 HOH HOH . F 5 HOH A 20 420 40 HOH HOH . F 5 HOH A 21 421 29 HOH HOH . F 5 HOH A 22 422 63 HOH HOH . F 5 HOH A 23 423 37 HOH HOH . F 5 HOH A 24 424 104 HOH HOH . F 5 HOH A 25 425 8 HOH HOH . F 5 HOH A 26 426 134 HOH HOH . F 5 HOH A 27 427 99 HOH HOH . F 5 HOH A 28 428 11 HOH HOH . F 5 HOH A 29 429 19 HOH HOH . F 5 HOH A 30 430 76 HOH HOH . F 5 HOH A 31 431 94 HOH HOH . F 5 HOH A 32 432 118 HOH HOH . F 5 HOH A 33 433 58 HOH HOH . F 5 HOH A 34 434 44 HOH HOH . F 5 HOH A 35 435 137 HOH HOH . F 5 HOH A 36 436 91 HOH HOH . F 5 HOH A 37 437 66 HOH HOH . F 5 HOH A 38 438 41 HOH HOH . F 5 HOH A 39 439 139 HOH HOH . F 5 HOH A 40 440 12 HOH HOH . F 5 HOH A 41 441 21 HOH HOH . F 5 HOH A 42 442 9 HOH HOH . F 5 HOH A 43 443 7 HOH HOH . F 5 HOH A 44 444 13 HOH HOH . F 5 HOH A 45 445 89 HOH HOH . F 5 HOH A 46 446 42 HOH HOH . F 5 HOH A 47 447 24 HOH HOH . F 5 HOH A 48 448 71 HOH HOH . F 5 HOH A 49 449 140 HOH HOH . F 5 HOH A 50 450 49 HOH HOH . F 5 HOH A 51 451 5 HOH HOH . F 5 HOH A 52 452 78 HOH HOH . F 5 HOH A 53 453 50 HOH HOH . F 5 HOH A 54 454 116 HOH HOH . F 5 HOH A 55 455 107 HOH HOH . F 5 HOH A 56 456 111 HOH HOH . F 5 HOH A 57 457 6 HOH HOH . F 5 HOH A 58 458 2 HOH HOH . F 5 HOH A 59 459 121 HOH HOH . F 5 HOH A 60 460 17 HOH HOH . F 5 HOH A 61 461 45 HOH HOH . F 5 HOH A 62 462 22 HOH HOH . F 5 HOH A 63 463 132 HOH HOH . F 5 HOH A 64 464 133 HOH HOH . F 5 HOH A 65 465 62 HOH HOH . F 5 HOH A 66 466 16 HOH HOH . F 5 HOH A 67 467 106 HOH HOH . F 5 HOH A 68 468 115 HOH HOH . F 5 HOH A 69 469 68 HOH HOH . F 5 HOH A 70 470 79 HOH HOH . F 5 HOH A 71 471 14 HOH HOH . F 5 HOH A 72 472 135 HOH HOH . F 5 HOH A 73 473 117 HOH HOH . F 5 HOH A 74 474 128 HOH HOH . F 5 HOH A 75 475 36 HOH HOH . F 5 HOH A 76 476 80 HOH HOH . F 5 HOH A 77 477 32 HOH HOH . F 5 HOH A 78 478 30 HOH HOH . F 5 HOH A 79 479 70 HOH HOH . F 5 HOH A 80 480 60 HOH HOH . F 5 HOH A 81 481 141 HOH HOH . F 5 HOH A 82 482 120 HOH HOH . F 5 HOH A 83 483 73 HOH HOH . F 5 HOH A 84 484 144 HOH HOH . F 5 HOH A 85 485 26 HOH HOH . F 5 HOH A 86 486 53 HOH HOH . F 5 HOH A 87 487 27 HOH HOH . F 5 HOH A 88 488 52 HOH HOH . F 5 HOH A 89 489 142 HOH HOH . F 5 HOH A 90 490 136 HOH HOH . F 5 HOH A 91 491 113 HOH HOH . F 5 HOH A 92 492 77 HOH HOH . F 5 HOH A 93 493 51 HOH HOH . F 5 HOH A 94 494 28 HOH HOH . F 5 HOH A 95 495 103 HOH HOH . F 5 HOH A 96 496 75 HOH HOH . F 5 HOH A 97 497 46 HOH HOH . F 5 HOH A 98 498 95 HOH HOH . F 5 HOH A 99 499 67 HOH HOH . F 5 HOH A 100 500 25 HOH HOH . F 5 HOH A 101 501 18 HOH HOH . F 5 HOH A 102 502 147 HOH HOH . F 5 HOH A 103 503 143 HOH HOH . F 5 HOH A 104 504 98 HOH HOH . F 5 HOH A 105 505 38 HOH HOH . F 5 HOH A 106 506 31 HOH HOH . F 5 HOH A 107 507 154 HOH HOH . F 5 HOH A 108 508 102 HOH HOH . F 5 HOH A 109 509 148 HOH HOH . F 5 HOH A 110 510 72 HOH HOH . F 5 HOH A 111 511 3 HOH HOH . F 5 HOH A 112 512 83 HOH HOH . F 5 HOH A 113 513 151 HOH HOH . F 5 HOH A 114 514 150 HOH HOH . F 5 HOH A 115 515 92 HOH HOH . F 5 HOH A 116 516 152 HOH HOH . F 5 HOH A 117 517 54 HOH HOH . F 5 HOH A 118 518 82 HOH HOH . F 5 HOH A 119 519 56 HOH HOH . F 5 HOH A 120 520 47 HOH HOH . F 5 HOH A 121 521 153 HOH HOH . F 5 HOH A 122 522 64 HOH HOH . F 5 HOH A 123 523 155 HOH HOH . F 5 HOH A 124 524 145 HOH HOH . F 5 HOH A 125 525 87 HOH HOH . F 5 HOH A 126 526 108 HOH HOH . F 5 HOH A 127 527 84 HOH HOH . F 5 HOH A 128 528 131 HOH HOH . F 5 HOH A 129 529 123 HOH HOH . F 5 HOH A 130 530 69 HOH HOH . F 5 HOH A 131 531 1 HOH HOH . F 5 HOH A 132 532 138 HOH HOH . F 5 HOH A 133 533 96 HOH HOH . F 5 HOH A 134 534 100 HOH HOH . F 5 HOH A 135 535 124 HOH HOH . F 5 HOH A 136 536 97 HOH HOH . F 5 HOH A 137 537 125 HOH HOH . F 5 HOH A 138 538 74 HOH HOH . F 5 HOH A 139 539 85 HOH HOH . F 5 HOH A 140 540 86 HOH HOH . F 5 HOH A 141 541 146 HOH HOH . F 5 HOH A 142 542 114 HOH HOH . G 5 HOH B 1 101 4 HOH HOH . G 5 HOH B 2 102 15 HOH HOH . G 5 HOH B 3 103 90 HOH HOH . G 5 HOH B 4 104 88 HOH HOH . G 5 HOH B 5 105 119 HOH HOH . G 5 HOH B 6 106 105 HOH HOH . G 5 HOH B 7 107 33 HOH HOH . G 5 HOH B 8 108 130 HOH HOH . G 5 HOH B 9 109 127 HOH HOH . G 5 HOH B 10 110 126 HOH HOH . G 5 HOH B 11 111 59 HOH HOH . G 5 HOH B 12 112 109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.179 _atom_site.Cartn_y 15.641 _atom_site.Cartn_z -40.335 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #