data_6FK6 # _model_server_result.job_id G0pXkoOlSLzo_CfJBwQmHQ _model_server_result.datetime_utc '2024-11-23 01:06:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":411}' # _entry.id 6FK6 # _exptl.entry_id 6FK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.884 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2~{S})-2-(4-chlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FK6 _cell.length_a 244.209 _cell.length_b 244.209 _cell.length_c 111.752 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 400 NAG 2 n B NAG 2 B 2 NAG A 401 NAG 2 n B BMA 3 B 3 BMA A 402 BMA 2 n B MAN 4 B 4 MAN A 403 MAN 2 n B MAN 5 B 5 MAN A 404 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 C C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C22 H24 Cl N O3' _chem_comp.formula_weight 385.884 _chem_comp.id DOK _chem_comp.mon_nstd_flag . _chem_comp.name "(2~{S})-2-(4-chlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 DOK doub 161 n y C17 C12 DOK sing 162 n y C16 C15 DOK sing 163 n y C25 C21 DOK sing 164 n n O13 C12 DOK sing 165 n n O13 C3 DOK sing 166 n n C12 C11 DOK doub 167 n y C5 N6 DOK sing 168 n n C5 C4 DOK sing 169 n n C15 C14 DOK doub 170 n y C18 C21 DOK sing 171 n n C18 C7 DOK sing 172 n n C18 C9 DOK sing 173 n n N6 C7 DOK sing 174 n n N6 C1 DOK sing 175 n n C4 C3 DOK sing 176 n n C24 C21 DOK sing 177 n n C20 C9 DOK doub 178 n y C20 C23 DOK sing 179 n y C3 O10 DOK sing 180 n n C3 C2 DOK sing 181 n n C7 O8 DOK doub 182 n n C1 C2 DOK sing 183 n n C11 C14 DOK sing 184 n y C11 O10 DOK sing 185 n n C9 C19 DOK sing 186 n y C23 C26 DOK doub 187 n y C19 C22 DOK doub 188 n y C26 C22 DOK sing 189 n y C26 CL DOK sing 190 n n C15 H1 DOK sing 191 n n C16 H2 DOK sing 192 n n C17 H3 DOK sing 193 n n C18 H4 DOK sing 194 n n C19 H5 DOK sing 195 n n C20 H6 DOK sing 196 n n C21 H7 DOK sing 197 n n C22 H8 DOK sing 198 n n C23 H9 DOK sing 199 n n C24 H10 DOK sing 200 n n C24 H11 DOK sing 201 n n C24 H12 DOK sing 202 n n C25 H13 DOK sing 203 n n C25 H14 DOK sing 204 n n C25 H15 DOK sing 205 n n C1 H16 DOK sing 206 n n C1 H17 DOK sing 207 n n C2 H18 DOK sing 208 n n C2 H19 DOK sing 209 n n C4 H20 DOK sing 210 n n C4 H21 DOK sing 211 n n C5 H22 DOK sing 212 n n C5 H23 DOK sing 213 n n C14 H24 DOK sing 214 n n # _atom_sites.entry_id 6FK6 _atom_sites.fract_transf_matrix[1][1] 0.004095 _atom_sites.fract_transf_matrix[1][2] 0.002364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLM A 1 401 1322 PLM P1L . D 4 BOG A 1 407 500 BOG BOG . E 4 BOG A 1 408 501 BOG BOG . F 4 BOG A 1 409 502 BOG BOG . G 4 BOG A 1 410 503 BOG BOG . H 5 DOK A 1 411 600 DOK L0R . I 6 HOH A 1 501 1071 HOH HOH . I 6 HOH A 2 502 1072 HOH HOH . I 6 HOH A 3 503 1070 HOH HOH . I 6 HOH A 4 504 1050 HOH HOH . I 6 HOH A 5 505 1004 HOH HOH . I 6 HOH A 6 506 1058 HOH HOH . I 6 HOH A 7 507 1033 HOH HOH . I 6 HOH A 8 508 1048 HOH HOH . I 6 HOH A 9 509 1038 HOH HOH . I 6 HOH A 10 510 1068 HOH HOH . I 6 HOH A 11 511 1003 HOH HOH . I 6 HOH A 12 512 1001 HOH HOH . I 6 HOH A 13 513 1022 HOH HOH . I 6 HOH A 14 514 1015 HOH HOH . I 6 HOH A 15 515 1073 HOH HOH . I 6 HOH A 16 516 1049 HOH HOH . I 6 HOH A 17 517 1051 HOH HOH . I 6 HOH A 18 518 1024 HOH HOH . I 6 HOH A 19 519 1076 HOH HOH . I 6 HOH A 20 520 1075 HOH HOH . I 6 HOH A 21 521 1080 HOH HOH . I 6 HOH A 22 522 1005 HOH HOH . I 6 HOH A 23 523 1030 HOH HOH . I 6 HOH A 24 524 1059 HOH HOH . I 6 HOH A 25 525 1008 HOH HOH . I 6 HOH A 26 526 1078 HOH HOH . I 6 HOH A 27 527 1000 HOH HOH . I 6 HOH A 28 528 1034 HOH HOH . I 6 HOH A 29 529 1007 HOH HOH . I 6 HOH A 30 530 1025 HOH HOH . I 6 HOH A 31 531 1041 HOH HOH . I 6 HOH A 32 532 1064 HOH HOH . I 6 HOH A 33 533 1052 HOH HOH . I 6 HOH A 34 534 1043 HOH HOH . I 6 HOH A 35 535 1062 HOH HOH . I 6 HOH A 36 536 1054 HOH HOH . I 6 HOH A 37 537 1045 HOH HOH . I 6 HOH A 38 538 1040 HOH HOH . I 6 HOH A 39 539 1009 HOH HOH . I 6 HOH A 40 540 1029 HOH HOH . I 6 HOH A 41 541 1018 HOH HOH . I 6 HOH A 42 542 1042 HOH HOH . I 6 HOH A 43 543 1021 HOH HOH . I 6 HOH A 44 544 1047 HOH HOH . I 6 HOH A 45 545 1023 HOH HOH . I 6 HOH A 46 546 1039 HOH HOH . I 6 HOH A 47 547 1013 HOH HOH . I 6 HOH A 48 548 1060 HOH HOH . I 6 HOH A 49 549 1065 HOH HOH . I 6 HOH A 50 550 1019 HOH HOH . I 6 HOH A 51 551 1028 HOH HOH . I 6 HOH A 52 552 1006 HOH HOH . I 6 HOH A 53 553 1066 HOH HOH . I 6 HOH A 54 554 1026 HOH HOH . I 6 HOH A 55 555 1014 HOH HOH . I 6 HOH A 56 556 1032 HOH HOH . I 6 HOH A 57 557 1027 HOH HOH . I 6 HOH A 58 558 1011 HOH HOH . I 6 HOH A 59 559 1046 HOH HOH . I 6 HOH A 60 560 1012 HOH HOH . I 6 HOH A 61 561 1061 HOH HOH . I 6 HOH A 62 562 1079 HOH HOH . I 6 HOH A 63 563 1017 HOH HOH . I 6 HOH A 64 564 1055 HOH HOH . I 6 HOH A 65 565 1037 HOH HOH . I 6 HOH A 66 566 1020 HOH HOH . I 6 HOH A 67 567 1036 HOH HOH . I 6 HOH A 68 568 1069 HOH HOH . I 6 HOH A 69 569 1082 HOH HOH . I 6 HOH A 70 570 1067 HOH HOH . I 6 HOH A 71 571 1081 HOH HOH . I 6 HOH A 72 572 1077 HOH HOH . I 6 HOH A 73 573 1053 HOH HOH . I 6 HOH A 74 574 1063 HOH HOH . I 6 HOH A 75 575 1056 HOH HOH . I 6 HOH A 76 576 1074 HOH HOH . I 6 HOH A 77 577 1044 HOH HOH . I 6 HOH A 78 578 1016 HOH HOH . I 6 HOH A 79 579 1057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 DOK . . . H 5 -116.997 -161.916 147.785 1 81.61 ? C11 DOK 411 A 1 HETATM 2 C C15 DOK . . . H 5 -118.55 -160.262 147.185 1 83.69 ? C15 DOK 411 A 1 HETATM 3 C C16 DOK . . . H 5 -117.871 -160.044 145.998 1 85.93 ? C16 DOK 411 A 1 HETATM 4 C C17 DOK . . . H 5 -116.716 -160.765 145.657 1 92.68 ? C17 DOK 411 A 1 HETATM 5 C C18 DOK . . . H 5 -112.11 -167.281 147.332 1 80.53 ? C18 DOK 411 A 1 HETATM 6 C C19 DOK . . . H 5 -113.026 -167.811 149.607 1 64.38 ? C19 DOK 411 A 1 HETATM 7 C C20 DOK . . . H 5 -114.266 -168.536 147.66 1 65.1 ? C20 DOK 411 A 1 HETATM 8 C C21 DOK . . . H 5 -110.763 -168.044 147.498 1 84.94 ? C21 DOK 411 A 1 HETATM 9 C C22 DOK . . . H 5 -113.983 -168.373 150.433 1 56.56 ? C22 DOK 411 A 1 HETATM 10 C C23 DOK . . . H 5 -115.234 -169.107 148.482 1 61.54 ? C23 DOK 411 A 1 HETATM 11 C C24 DOK . . . H 5 -110.957 -169.568 147.469 1 84.09 ? C24 DOK 411 A 1 HETATM 12 C C25 DOK . . . H 5 -109.781 -167.648 146.388 1 82.39 ? C25 DOK 411 A 1 HETATM 13 C C26 DOK . . . H 5 -115.07 -169.013 149.849 1 74.45 ? C26 DOK 411 A 1 HETATM 14 C C1 DOK . . . H 5 -112.761 -163.465 147.759 1 73.14 ? C1 DOK 411 A 1 HETATM 15 C C2 DOK . . . H 5 -113.989 -162.989 148.536 1 77.73 ? C2 DOK 411 A 1 HETATM 16 C C3 DOK . . . H 5 -115.241 -163.3 147.727 1 82.17 ? C3 DOK 411 A 1 HETATM 17 C C4 DOK . . . H 5 -115.343 -164.79 147.384 1 74.38 ? C4 DOK 411 A 1 HETATM 18 C C5 DOK . . . H 5 -114.086 -165.178 146.585 1 70.03 ? C5 DOK 411 A 1 HETATM 19 N N6 DOK . . . H 5 -112.887 -164.882 147.378 1 78.86 ? N6 DOK 411 A 1 HETATM 20 C C7 DOK . . . H 5 -111.926 -165.827 147.757 1 83.22 ? C7 DOK 411 A 1 HETATM 21 O O8 DOK . . . H 5 -110.952 -165.482 148.429 1 79.05 ? O8 DOK 411 A 1 HETATM 22 C C9 DOK . . . H 5 -113.159 -167.892 148.222 1 67.73 ? C9 DOK 411 A 1 HETATM 23 O O10 DOK . . . H 5 -116.368 -162.896 148.499 1 84.07 ? O10 DOK 411 A 1 HETATM 24 C C12 DOK . . . H 5 -116.307 -161.696 146.581 1 85.24 ? C12 DOK 411 A 1 HETATM 25 O O13 DOK . . . H 5 -115.228 -162.536 146.519 1 76.87 ? O13 DOK 411 A 1 HETATM 26 C C14 DOK . . . H 5 -118.125 -161.217 148.121 1 80.44 ? C14 DOK 411 A 1 HETATM 27 CL CL DOK . . . H 5 -116.262 -169.719 150.883 1 86.32 ? CL DOK 411 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #