data_6FK7 # _model_server_result.job_id sZm1qDqEj30V0Z4pQcfVvw _model_server_result.datetime_utc '2025-02-17 03:24:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 6FK7 # _exptl.entry_id 6FK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.857 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2~{R},3~{R})-2-(4-chlorophenyl)-3-oxidanyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FK7 _cell.length_a 243.391 _cell.length_b 243.391 _cell.length_c 111.547 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_466 y-1,x+1,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -365.0865 210.782789 111.547 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 400 NAG 2 n B NAG 2 B 2 NAG A 401 NAG 2 n B BMA 3 B 3 BMA A 402 BMA 2 n B MAN 4 B 4 MAN A 403 MAN 2 n B MAN 5 B 5 MAN A 404 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 C C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C21 H22 Cl N O4' _chem_comp.formula_weight 387.857 _chem_comp.id DO5 _chem_comp.mon_nstd_flag . _chem_comp.name "(2~{R},3~{R})-2-(4-chlorophenyl)-3-oxidanyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 DO5 doub 161 n y C4 C3 DO5 sing 162 n y C5 C6 DO5 sing 163 n y O24 C22 DO5 sing 164 n n O7 C3 DO5 sing 165 n n O7 C8 DO5 sing 166 n n C11 N12 DO5 sing 167 n n C11 C10 DO5 sing 168 n n C3 C2 DO5 doub 169 n y C23 C22 DO5 sing 170 n n C14 C22 DO5 sing 171 n n C14 C13 DO5 sing 172 n n C14 C15 DO5 sing 173 n n N12 C26 DO5 sing 174 n n N12 C13 DO5 sing 175 n n C6 C1 DO5 doub 176 n y C10 C8 DO5 sing 177 n n C26 C27 DO5 sing 178 n n C13 O25 DO5 doub 179 n n C8 C27 DO5 sing 180 n n C8 O9 DO5 sing 181 n n C21 C15 DO5 doub 182 n y C21 C20 DO5 sing 183 n y C2 C1 DO5 sing 184 n y C2 O9 DO5 sing 185 n n C15 C16 DO5 sing 186 n y C20 C18 DO5 doub 187 n y C16 C17 DO5 doub 188 n y C18 C17 DO5 sing 189 n y C18 CL DO5 sing 190 n n C10 H1 DO5 sing 191 n n C10 H2 DO5 sing 192 n n C11 H3 DO5 sing 193 n n C11 H4 DO5 sing 194 n n C16 H5 DO5 sing 195 n n C17 H6 DO5 sing 196 n n C20 H7 DO5 sing 197 n n C21 H8 DO5 sing 198 n n C22 H9 DO5 sing 199 n n C23 H10 DO5 sing 200 n n C23 H11 DO5 sing 201 n n C23 H12 DO5 sing 202 n n C26 H13 DO5 sing 203 n n C26 H14 DO5 sing 204 n n C27 H15 DO5 sing 205 n n C27 H16 DO5 sing 206 n n C1 H17 DO5 sing 207 n n C4 H18 DO5 sing 208 n n C5 H19 DO5 sing 209 n n C6 H20 DO5 sing 210 n n C14 H21 DO5 sing 211 n n O24 H22 DO5 sing 212 n n # _atom_sites.entry_id 6FK7 _atom_sites.fract_transf_matrix[1][1] 0.004109 _atom_sites.fract_transf_matrix[1][2] 0.002372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLM A 1 401 1322 PLM P1L . D 4 BOG A 1 402 500 BOG BOG . E 4 BOG A 1 403 501 BOG BOG . F 4 BOG A 1 404 502 BOG BOG . G 4 BOG A 1 405 503 BOG BOG . H 4 BOG A 1 406 504 BOG BOG . I 5 DO5 A 1 407 600 DO5 L0R . J 6 HOH A 1 501 1025 HOH HOH . J 6 HOH A 2 502 1002 HOH HOH . J 6 HOH A 3 503 1007 HOH HOH . J 6 HOH A 4 504 1018 HOH HOH . J 6 HOH A 5 505 1004 HOH HOH . J 6 HOH A 6 506 1016 HOH HOH . J 6 HOH A 7 507 1017 HOH HOH . J 6 HOH A 8 508 1001 HOH HOH . J 6 HOH A 9 509 1022 HOH HOH . J 6 HOH A 10 510 1006 HOH HOH . J 6 HOH A 11 511 1000 HOH HOH . J 6 HOH A 12 512 1014 HOH HOH . J 6 HOH A 13 513 1003 HOH HOH . J 6 HOH A 14 514 1009 HOH HOH . J 6 HOH A 15 515 1023 HOH HOH . J 6 HOH A 16 516 1008 HOH HOH . J 6 HOH A 17 517 1012 HOH HOH . J 6 HOH A 18 518 1026 HOH HOH . J 6 HOH A 19 519 1015 HOH HOH . J 6 HOH A 20 520 1005 HOH HOH . J 6 HOH A 21 521 1013 HOH HOH . J 6 HOH A 22 522 1011 HOH HOH . J 6 HOH A 23 523 1010 HOH HOH . J 6 HOH A 24 524 1020 HOH HOH . J 6 HOH A 25 525 1019 HOH HOH . J 6 HOH A 26 526 1027 HOH HOH . J 6 HOH A 27 527 1024 HOH HOH . J 6 HOH A 28 528 1021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DO5 . . . I 5 -236.744 46.647 35.869 1 66.92 ? C10 DO5 407 A 1 HETATM 2 C C11 DO5 . . . I 5 -235.587 46.139 35.002 1 64.02 ? C11 DO5 407 A 1 HETATM 3 C C13 DO5 . . . I 5 -233.46 45.39 36.056 1 74.97 ? C13 DO5 407 A 1 HETATM 4 C C15 DO5 . . . I 5 -234.783 43.357 36.665 1 66.41 ? C15 DO5 407 A 1 HETATM 5 C C16 DO5 . . . I 5 -234.523 43.438 38.031 1 62.39 ? C16 DO5 407 A 1 HETATM 6 C C17 DO5 . . . I 5 -235.406 42.86 38.936 1 66.95 ? C17 DO5 407 A 1 HETATM 7 C C18 DO5 . . . I 5 -236.536 42.212 38.446 1 80.74 ? C18 DO5 407 A 1 HETATM 8 C C20 DO5 . . . I 5 -236.81 42.119 37.096 1 70.45 ? C20 DO5 407 A 1 HETATM 9 C C21 DO5 . . . I 5 -235.921 42.698 36.204 1 71.52 ? C21 DO5 407 A 1 HETATM 10 C C22 DO5 . . . I 5 -232.479 43.125 35.77 1 74.25 ? C22 DO5 407 A 1 HETATM 11 C C23 DO5 . . . I 5 -232.724 41.601 35.687 1 70.04 ? C23 DO5 407 A 1 HETATM 12 C C26 DO5 . . . I 5 -234.06 47.813 36.001 1 74.07 ? C26 DO5 407 A 1 HETATM 13 C C27 DO5 . . . I 5 -235.184 48.405 36.853 1 73.33 ? C27 DO5 407 A 1 HETATM 14 C C1 DO5 . . . I 5 -239.243 50.405 36.701 1 76.19 ? C1 DO5 407 A 1 HETATM 15 C C2 DO5 . . . I 5 -238.186 49.627 36.308 1 72.69 ? C2 DO5 407 A 1 HETATM 16 C C3 DO5 . . . I 5 -237.579 49.772 35.051 1 72.27 ? C3 DO5 407 A 1 HETATM 17 C C4 DO5 . . . I 5 -238.003 50.702 34.133 1 84.34 ? C4 DO5 407 A 1 HETATM 18 C C5 DO5 . . . I 5 -239.085 51.502 34.529 1 77.18 ? C5 DO5 407 A 1 HETATM 19 C C6 DO5 . . . I 5 -239.681 51.359 35.768 1 71.19 ? C6 DO5 407 A 1 HETATM 20 O O7 DO5 . . . I 5 -236.559 48.869 34.935 1 68.35 ? O7 DO5 407 A 1 HETATM 21 C C8 DO5 . . . I 5 -236.519 48.136 36.159 1 77.57 ? C8 DO5 407 A 1 HETATM 22 O O9 DO5 . . . I 5 -237.559 48.627 37.003 1 78.05 ? O9 DO5 407 A 1 HETATM 23 N N12 DO5 . . . I 5 -234.32 46.402 35.704 1 70.76 ? N12 DO5 407 A 1 HETATM 24 C C14 DO5 . . . I 5 -233.811 43.955 35.699 1 73.84 ? C14 DO5 407 A 1 HETATM 25 CL CL DO5 . . . I 5 -237.64 41.495 39.559 1 93.22 ? CL DO5 407 A 1 HETATM 26 O O24 DO5 . . . I 5 -231.706 43.445 34.656 1 74.08 ? O24 DO5 407 A 1 HETATM 27 O O25 DO5 . . . I 5 -232.413 45.667 36.642 1 76.68 ? O25 DO5 407 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #