data_6FKA # _model_server_result.job_id tZUcnBzzVBJI2Xvk2xdiHw _model_server_result.datetime_utc '2024-11-21 14:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":412}' # _entry.id 6FKA # _exptl.entry_id 6FKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.329 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2~{S})-2-(3,4-dichlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKA _cell.length_a 244.124 _cell.length_b 244.124 _cell.length_c 111.201 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 400 NAG 2 n B NAG 2 B 2 NAG A 401 NAG 2 n B BMA 3 B 3 BMA A 402 BMA 2 n B MAN 4 B 4 MAN A 403 MAN 2 n B MAN 5 B 5 MAN A 404 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 C C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C22 H23 Cl2 N O3' _chem_comp.formula_weight 420.329 _chem_comp.id DN5 _chem_comp.mon_nstd_flag . _chem_comp.name "(2~{S})-2-(3,4-dichlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C22 DN5 sing 161 n n O21 C3 DN5 sing 162 n n C28 C22 DN5 doub 163 n y C28 C27 DN5 sing 164 n y C2 C3 DN5 sing 165 n n C2 C1 DN5 sing 166 n n C20 C18 DN5 sing 167 n n C22 C23 DN5 sing 168 n y C27 C26 DN5 doub 169 n y C3 C4 DN5 sing 170 n n C3 O24 DN5 sing 171 n n C1 N6 DN5 sing 172 n n C19 C18 DN5 sing 173 n n C9 C18 DN5 sing 174 n n C9 C7 DN5 sing 175 n n C9 C10 DN5 sing 176 n n C4 C5 DN5 sing 177 n n N6 C7 DN5 sing 178 n n N6 C5 DN5 sing 179 n n C23 O24 DN5 sing 180 n n C23 C25 DN5 doub 181 n y C7 O8 DN5 doub 182 n n C15 C10 DN5 doub 183 n y C15 C14 DN5 sing 184 n y C26 C25 DN5 sing 185 n y CL6 C14 DN5 sing 186 n n C10 C11 DN5 sing 187 n y C14 C13 DN5 doub 188 n y C11 C12 DN5 doub 189 n y C13 C12 DN5 sing 190 n y C13 CL7 DN5 sing 191 n n C11 H1 DN5 sing 192 n n C15 H2 DN5 sing 193 n n C18 H3 DN5 sing 194 n n C19 H4 DN5 sing 195 n n C19 H5 DN5 sing 196 n n C19 H6 DN5 sing 197 n n C20 H7 DN5 sing 198 n n C20 H8 DN5 sing 199 n n C20 H9 DN5 sing 200 n n C25 H10 DN5 sing 201 n n C26 H11 DN5 sing 202 n n C27 H12 DN5 sing 203 n n C28 H13 DN5 sing 204 n n C1 H14 DN5 sing 205 n n C1 H15 DN5 sing 206 n n C2 H16 DN5 sing 207 n n C2 H17 DN5 sing 208 n n C4 H18 DN5 sing 209 n n C4 H19 DN5 sing 210 n n C5 H20 DN5 sing 211 n n C5 H21 DN5 sing 212 n n C9 H22 DN5 sing 213 n n C12 H23 DN5 sing 214 n n # _atom_sites.entry_id 6FKA _atom_sites.fract_transf_matrix[1][1] 0.004096 _atom_sites.fract_transf_matrix[1][2] 0.002365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLM A 1 401 1322 PLM P1L . D 4 BOG A 1 407 500 BOG BOG . E 4 BOG A 1 408 501 BOG BOG . F 4 BOG A 1 409 502 BOG BOG . G 4 BOG A 1 410 503 BOG BOG . H 4 BOG A 1 411 504 BOG BOG . I 5 DN5 A 1 412 600 DN5 L0R . J 6 HOH A 1 501 1009 HOH HOH . J 6 HOH A 2 502 1010 HOH HOH . J 6 HOH A 3 503 1007 HOH HOH . J 6 HOH A 4 504 1004 HOH HOH . J 6 HOH A 5 505 1016 HOH HOH . J 6 HOH A 6 506 1001 HOH HOH . J 6 HOH A 7 507 1002 HOH HOH . J 6 HOH A 8 508 1003 HOH HOH . J 6 HOH A 9 509 1017 HOH HOH . J 6 HOH A 10 510 1000 HOH HOH . J 6 HOH A 11 511 1015 HOH HOH . J 6 HOH A 12 512 1005 HOH HOH . J 6 HOH A 13 513 1014 HOH HOH . J 6 HOH A 14 514 1008 HOH HOH . J 6 HOH A 15 515 1011 HOH HOH . J 6 HOH A 16 516 1018 HOH HOH . J 6 HOH A 17 517 1012 HOH HOH . J 6 HOH A 18 518 1006 HOH HOH . J 6 HOH A 19 519 1013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DN5 . . . I 5 -357.464 -168.087 147.609 1 63.95 ? C10 DN5 412 A 1 HETATM 2 C C11 DN5 . . . I 5 -357.21 -168.02 148.98 1 63.18 ? C11 DN5 412 A 1 HETATM 3 C C13 DN5 . . . I 5 -359.261 -169.149 149.421 1 74.87 ? C13 DN5 412 A 1 HETATM 4 C C15 DN5 . . . I 5 -358.638 -168.678 147.144 1 64.48 ? C15 DN5 412 A 1 HETATM 5 C C18 DN5 . . . I 5 -355.099 -168.228 146.704 1 69.51 ? C18 DN5 412 A 1 HETATM 6 C C19 DN5 . . . I 5 -355.298 -169.745 146.647 1 60.66 ? C19 DN5 412 A 1 HETATM 7 C C20 DN5 . . . I 5 -354.222 -167.805 145.52 1 69.26 ? C20 DN5 412 A 1 HETATM 8 C C22 DN5 . . . I 5 -360.616 -161.394 145.762 1 77.48 ? C22 DN5 412 A 1 HETATM 9 C C23 DN5 . . . I 5 -360.916 -162.046 146.972 1 76.21 ? C23 DN5 412 A 1 HETATM 10 C C25 DN5 . . . I 5 -361.983 -161.688 147.738 1 80.66 ? C25 DN5 412 A 1 HETATM 11 C C26 DN5 . . . I 5 -362.755 -160.632 147.229 1 86.75 ? C26 DN5 412 A 1 HETATM 12 C C27 DN5 . . . I 5 -362.461 -159.984 146.044 1 79.84 ? C27 DN5 412 A 1 HETATM 13 C C28 DN5 . . . I 5 -361.367 -160.358 145.266 1 81.5 ? C28 DN5 412 A 1 HETATM 14 C C1 DN5 . . . I 5 -358.668 -165.394 146.342 1 72.31 ? C1 DN5 412 A 1 HETATM 15 C C2 DN5 . . . I 5 -359.1 -164.316 145.368 1 81.43 ? C2 DN5 412 A 1 HETATM 16 C C3 DN5 . . . I 5 -359.091 -162.994 146.112 1 79.88 ? C3 DN5 412 A 1 HETATM 17 C C4 DN5 . . . I 5 -357.71 -162.663 146.654 1 70.8 ? C4 DN5 412 A 1 HETATM 18 C C5 DN5 . . . I 5 -357.27 -163.765 147.606 1 75.03 ? C5 DN5 412 A 1 HETATM 19 N N6 DN5 . . . I 5 -357.363 -165.103 146.972 1 75.96 ? N6 DN5 412 A 1 HETATM 20 C C7 DN5 . . . I 5 -356.273 -166 147.032 1 75.99 ? C7 DN5 412 A 1 HETATM 21 O O8 DN5 . . . I 5 -355.182 -165.578 147.422 1 72.98 ? O8 DN5 412 A 1 HETATM 22 C C9 DN5 . . . I 5 -356.47 -167.482 146.65 1 74.09 ? C9 DN5 412 A 1 HETATM 23 C C12 DN5 . . . I 5 -358.102 -168.554 149.887 1 67.23 ? C12 DN5 412 A 1 HETATM 24 C C14 DN5 . . . I 5 -359.527 -169.209 148.067 1 76.41 ? C14 DN5 412 A 1 HETATM 25 CL CL6 DN5 . . . I 5 -360.963 -169.941 147.518 1 83.29 ? CL6 DN5 412 A 1 HETATM 26 CL CL7 DN5 . . . I 5 -360.353 -169.802 150.548 1 84.83 ? CL7 DN5 412 A 1 HETATM 27 O O21 DN5 . . . I 5 -359.504 -161.958 145.217 1 84.81 ? O21 DN5 412 A 1 HETATM 28 O O24 DN5 . . . I 5 -359.997 -163.041 147.21 1 75.84 ? O24 DN5 412 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #