data_6FKB
#
_model_server_result.job_id            zCMaqEmcVAp6DH6uk9iMyg 
_model_server_result.datetime_utc      '2024-11-05 08:39:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fkb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6FKB 
#
_exptl.entry_id    6FKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FKB 
_cell.length_a            242.852 
_cell.length_b            242.852 
_cell.length_c            111.469 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A SG CYS 323 A CYS 322 1_555 B C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 384 n n 
C1 O1 NAG sing 385 n n 
C1 O5 NAG sing 386 n n 
C1 H1 NAG sing 387 n n 
C2 C3 NAG sing 388 n n 
C2 N2 NAG sing 389 n n 
C2 H2 NAG sing 390 n n 
C3 C4 NAG sing 391 n n 
C3 O3 NAG sing 392 n n 
C3 H3 NAG sing 393 n n 
C4 C5 NAG sing 394 n n 
C4 O4 NAG sing 395 n n 
C4 H4 NAG sing 396 n n 
C5 C6 NAG sing 397 n n 
C5 O5 NAG sing 398 n n 
C5 H5 NAG sing 399 n n 
C6 O6 NAG sing 400 n n 
C6 H61 NAG sing 401 n n 
C6 H62 NAG sing 402 n n 
C7 C8 NAG sing 403 n n 
C7 N2 NAG sing 404 n n 
C7 O7 NAG doub 405 n n 
C8 H81 NAG sing 406 n n 
C8 H82 NAG sing 407 n n 
C8 H83 NAG sing 408 n n 
N2 HN2 NAG sing 409 n n 
O1 HO1 NAG sing 410 n n 
O3 HO3 NAG sing 411 n n 
O4 HO4 NAG sing 412 n n 
O6 HO6 NAG sing 413 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6FKB 
_atom_sites.fract_transf_matrix[1][1]    0.004118 
_atom_sites.fract_transf_matrix[1][2]    0.002377 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLM A 1 401 322 PLM P1L . 
C 3 NAG A 1 402 400 NAG NAG . 
D 3 NAG A 1 403 401 NAG NAG . 
E 4 BMA A 1 404 402 BMA BMA . 
F 5 MAN A 1 405 403 MAN MAN . 
G 5 MAN A 1 406 404 MAN MAN . 
H 6 BOG A 1 407 500 BOG BOG . 
I 6 BOG A 1 408 501 BOG BOG . 
J 6 BOG A 1 409 502 BOG BOG . 
K 6 BOG A 1 410 503 BOG BOG . 
L 6 BOG A 1 411 504 BOG BOG . 
M 7 DLH A 1 412 600 DLH L0R . 
N 8 HOH A 1 1000 1000 HOH HOH . 
N 8 HOH A 2 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 -211.657 73.196 39.12 1 77.31 ? C1 NAG 403 A 1 
HETATM 2 C C2 NAG . . . D 3 -210.472 72.712 39.916 1 52.84 ? C2 NAG 403 A 1 
HETATM 3 C C3 NAG . . . D 3 -209.207 72.898 39.093 1 59.52 ? C3 NAG 403 A 1 
HETATM 4 C C4 NAG . . . D 3 -209.345 72.154 37.769 1 73.97 ? C4 NAG 403 A 1 
HETATM 5 C C5 NAG . . . D 3 -210.651 72.516 37.052 1 48.43 ? C5 NAG 403 A 1 
HETATM 6 C C6 NAG . . . D 3 -210.946 71.597 35.89 1 54.8 ? C6 NAG 403 A 1 
HETATM 7 C C7 NAG . . . D 3 -210.638 72.762 42.358 1 77.27 ? C7 NAG 403 A 1 
HETATM 8 C C8 NAG . . . D 3 -210.5 73.59 43.601 1 94.1 ? C8 NAG 403 A 1 
HETATM 9 N N2 NAG . . . D 3 -210.373 73.383 41.203 1 67.65 ? N2 NAG 403 A 1 
HETATM 10 O O3 NAG . . . D 3 -208.084 72.412 39.818 1 93.52 ? O3 NAG 403 A 1 
HETATM 11 O O4 NAG . . . D 3 -208.253 72.459 36.909 1 99.96 ? O4 NAG 403 A 1 
HETATM 12 O O5 NAG . . . D 3 -211.779 72.421 37.94 1 56.43 ? O5 NAG 403 A 1 
HETATM 13 O O6 NAG . . . D 3 -211.387 72.319 34.748 1 77.06 ? O6 NAG 403 A 1 
HETATM 14 O O7 NAG . . . D 3 -210.968 71.58 42.398 1 74.48 ? O7 NAG 403 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#