data_6FKB # _model_server_result.job_id cPfF-0GJUAeAXAaIJKYk0A _model_server_result.datetime_utc '2024-11-23 03:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6FKB # _exptl.entry_id 6FKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKB _cell.length_a 242.852 _cell.length_b 242.852 _cell.length_c 111.469 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A SG CYS 323 A CYS 322 1_555 B C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 384 n n C1 O1 NAG sing 385 n n C1 O5 NAG sing 386 n n C1 H1 NAG sing 387 n n C2 C3 NAG sing 388 n n C2 N2 NAG sing 389 n n C2 H2 NAG sing 390 n n C3 C4 NAG sing 391 n n C3 O3 NAG sing 392 n n C3 H3 NAG sing 393 n n C4 C5 NAG sing 394 n n C4 O4 NAG sing 395 n n C4 H4 NAG sing 396 n n C5 C6 NAG sing 397 n n C5 O5 NAG sing 398 n n C5 H5 NAG sing 399 n n C6 O6 NAG sing 400 n n C6 H61 NAG sing 401 n n C6 H62 NAG sing 402 n n C7 C8 NAG sing 403 n n C7 N2 NAG sing 404 n n C7 O7 NAG doub 405 n n C8 H81 NAG sing 406 n n C8 H82 NAG sing 407 n n C8 H83 NAG sing 408 n n N2 HN2 NAG sing 409 n n O1 HO1 NAG sing 410 n n O3 HO3 NAG sing 411 n n O4 HO4 NAG sing 412 n n O6 HO6 NAG sing 413 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FKB _atom_sites.fract_transf_matrix[1][1] 0.004118 _atom_sites.fract_transf_matrix[1][2] 0.002377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 401 322 PLM P1L . C 3 NAG A 1 402 400 NAG NAG . D 3 NAG A 1 403 401 NAG NAG . E 4 BMA A 1 404 402 BMA BMA . F 5 MAN A 1 405 403 MAN MAN . G 5 MAN A 1 406 404 MAN MAN . H 6 BOG A 1 407 500 BOG BOG . I 6 BOG A 1 408 501 BOG BOG . J 6 BOG A 1 409 502 BOG BOG . K 6 BOG A 1 410 503 BOG BOG . L 6 BOG A 1 411 504 BOG BOG . M 7 DLH A 1 412 600 DLH L0R . N 8 HOH A 1 1000 1000 HOH HOH . N 8 HOH A 2 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -211.657 73.196 39.12 1 77.31 ? C1 NAG 403 A 1 HETATM 2 C C2 NAG . . . D 3 -210.472 72.712 39.916 1 52.84 ? C2 NAG 403 A 1 HETATM 3 C C3 NAG . . . D 3 -209.207 72.898 39.093 1 59.52 ? C3 NAG 403 A 1 HETATM 4 C C4 NAG . . . D 3 -209.345 72.154 37.769 1 73.97 ? C4 NAG 403 A 1 HETATM 5 C C5 NAG . . . D 3 -210.651 72.516 37.052 1 48.43 ? C5 NAG 403 A 1 HETATM 6 C C6 NAG . . . D 3 -210.946 71.597 35.89 1 54.8 ? C6 NAG 403 A 1 HETATM 7 C C7 NAG . . . D 3 -210.638 72.762 42.358 1 77.27 ? C7 NAG 403 A 1 HETATM 8 C C8 NAG . . . D 3 -210.5 73.59 43.601 1 94.1 ? C8 NAG 403 A 1 HETATM 9 N N2 NAG . . . D 3 -210.373 73.383 41.203 1 67.65 ? N2 NAG 403 A 1 HETATM 10 O O3 NAG . . . D 3 -208.084 72.412 39.818 1 93.52 ? O3 NAG 403 A 1 HETATM 11 O O4 NAG . . . D 3 -208.253 72.459 36.909 1 99.96 ? O4 NAG 403 A 1 HETATM 12 O O5 NAG . . . D 3 -211.779 72.421 37.94 1 56.43 ? O5 NAG 403 A 1 HETATM 13 O O6 NAG . . . D 3 -211.387 72.319 34.748 1 77.06 ? O6 NAG 403 A 1 HETATM 14 O O7 NAG . . . D 3 -210.968 71.58 42.398 1 74.48 ? O7 NAG 403 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #