data_6FKB
#
_model_server_result.job_id            tWafAygvzwXMN92b2zP2iQ 
_model_server_result.datetime_utc      '2024-11-05 08:41:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fkb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":410}' 
#
_entry.id    6FKB 
#
_exptl.entry_id    6FKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FKB 
_cell.length_a            242.852 
_cell.length_b            242.852 
_cell.length_c            111.469 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A SG CYS 323 A CYS 322 1_555 B C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 100 n n 
C1 C2 BOG sing 101 n n 
C1 O5 BOG sing 102 n n 
C1 H1 BOG sing 103 n n 
O1 C1' BOG sing 104 n n 
C2 O2 BOG sing 105 n n 
C2 C3 BOG sing 106 n n 
C2 H2 BOG sing 107 n n 
O2 HO2 BOG sing 108 n n 
C3 O3 BOG sing 109 n n 
C3 C4 BOG sing 110 n n 
C3 H3 BOG sing 111 n n 
O3 HO3 BOG sing 112 n n 
C4 O4 BOG sing 113 n n 
C4 C5 BOG sing 114 n n 
C4 H4 BOG sing 115 n n 
O4 HO4 BOG sing 116 n n 
C5 O5 BOG sing 117 n n 
C5 C6 BOG sing 118 n n 
C5 H5 BOG sing 119 n n 
C6 O6 BOG sing 120 n n 
C6 H61 BOG sing 121 n n 
C6 H62 BOG sing 122 n n 
O6 HO6 BOG sing 123 n n 
C1' C2' BOG sing 124 n n 
C1' "H1'1" BOG sing 125 n n 
C1' "H1'2" BOG sing 126 n n 
C2' C3' BOG sing 127 n n 
C2' "H2'1" BOG sing 128 n n 
C2' "H2'2" BOG sing 129 n n 
C3' C4' BOG sing 130 n n 
C3' "H3'1" BOG sing 131 n n 
C3' "H3'2" BOG sing 132 n n 
C4' C5' BOG sing 133 n n 
C4' "H4'1" BOG sing 134 n n 
C4' "H4'2" BOG sing 135 n n 
C5' C6' BOG sing 136 n n 
C5' "H5'1" BOG sing 137 n n 
C5' "H5'2" BOG sing 138 n n 
C6' C7' BOG sing 139 n n 
C6' "H6'1" BOG sing 140 n n 
C6' "H6'2" BOG sing 141 n n 
C7' C8' BOG sing 142 n n 
C7' "H7'1" BOG sing 143 n n 
C7' "H7'2" BOG sing 144 n n 
C8' "H8'1" BOG sing 145 n n 
C8' "H8'2" BOG sing 146 n n 
C8' "H8'3" BOG sing 147 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6FKB 
_atom_sites.fract_transf_matrix[1][1]    0.004118 
_atom_sites.fract_transf_matrix[1][2]    0.002377 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLM A 1 401 322 PLM P1L . 
C 3 NAG A 1 402 400 NAG NAG . 
D 3 NAG A 1 403 401 NAG NAG . 
E 4 BMA A 1 404 402 BMA BMA . 
F 5 MAN A 1 405 403 MAN MAN . 
G 5 MAN A 1 406 404 MAN MAN . 
H 6 BOG A 1 407 500 BOG BOG . 
I 6 BOG A 1 408 501 BOG BOG . 
J 6 BOG A 1 409 502 BOG BOG . 
K 6 BOG A 1 410 503 BOG BOG . 
L 6 BOG A 1 411 504 BOG BOG . 
M 7 DLH A 1 412 600 DLH L0R . 
N 8 HOH A 1 1000 1000 HOH HOH . 
N 8 HOH A 2 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . K 6 -254.341 27.332 47.692 1 119.95 ? C1 BOG 410 A 1 
HETATM 2 O O1 BOG . . . K 6 -253.29 28.247 47.384 1 114.8 ? O1 BOG 410 A 1 
HETATM 3 C C2 BOG . . . K 6 -254.125 26.763 49.099 1 114.2 ? C2 BOG 410 A 1 
HETATM 4 O O2 BOG . . . K 6 -253.144 25.718 49.029 1 110.23 ? O2 BOG 410 A 1 
HETATM 5 C C3 BOG . . . K 6 -255.385 26.192 49.746 1 118.5 ? C3 BOG 410 A 1 
HETATM 6 O O3 BOG . . . K 6 -255.153 26.07 51.157 1 110.24 ? O3 BOG 410 A 1 
HETATM 7 C C4 BOG . . . K 6 -256.604 27.068 49.468 1 131.26 ? C4 BOG 410 A 1 
HETATM 8 O O4 BOG . . . K 6 -257.796 26.445 49.965 1 131.11 ? O4 BOG 410 A 1 
HETATM 9 C C5 BOG . . . K 6 -256.725 27.3 47.966 1 134.85 ? C5 BOG 410 A 1 
HETATM 10 O O5 BOG . . . K 6 -255.58 28.026 47.531 1 129.24 ? O5 BOG 410 A 1 
HETATM 11 C C6 BOG . . . K 6 -257.979 28.088 47.59 1 131.65 ? C6 BOG 410 A 1 
HETATM 12 O O6 BOG . . . K 6 -257.945 28.455 46.203 1 126.95 ? O6 BOG 410 A 1 
HETATM 13 C C1' BOG . . . K 6 -253.518 28.91 46.14 1 99.71 ? C1' BOG 410 A 1 
HETATM 14 C C2' BOG . . . K 6 -252.296 29.745 45.782 1 83.25 ? C2' BOG 410 A 1 
HETATM 15 C C3' BOG . . . K 6 -252.217 29.974 44.28 1 65.44 ? C3' BOG 410 A 1 
HETATM 16 C C4' BOG . . . K 6 -250.792 30.332 43.89 1 66.33 ? C4' BOG 410 A 1 
HETATM 17 C C5' BOG . . . K 6 -250.744 30.802 42.445 1 73.8 ? C5' BOG 410 A 1 
HETATM 18 C C6' BOG . . . K 6 -249.368 31.358 42.113 1 73.56 ? C6' BOG 410 A 1 
HETATM 19 C C7' BOG . . . K 6 -249.496 32.39 41.004 1 73.21 ? C7' BOG 410 A 1 
HETATM 20 C C8' BOG . . . K 6 -248.516 32.104 39.891 1 77.15 ? C8' BOG 410 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#