data_6FKB # _model_server_result.job_id zk5dNt7mRtPuJkzB_gLSfA _model_server_result.datetime_utc '2024-11-23 03:49:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":412}' # _entry.id 6FKB # _exptl.entry_id 6FKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.804 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-(4-chlorophenyl)-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-ethanone" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKB _cell.length_a 242.852 _cell.length_b 242.852 _cell.length_c 111.469 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A SG CYS 323 A CYS 322 1_555 B C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? # _chem_comp.formula 'C19 H18 Cl N O3' _chem_comp.formula_weight 343.804 _chem_comp.id DLH _chem_comp.mon_nstd_flag . _chem_comp.name "2-(4-chlorophenyl)-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C6 DLH sing 161 n n O5 C1 DLH sing 162 n n C9 C1 DLH sing 163 n n C9 C11 DLH sing 164 n n C22 C6 DLH doub 165 n y C22 C23 DLH sing 166 n y C6 C7 DLH sing 167 n y O13 C3 DLH doub 168 n n C1 C8 DLH sing 169 n n C1 O4 DLH sing 170 n n C8 C10 DLH sing 171 n n C12 C3 DLH sing 172 n n C12 C14 DLH sing 173 n n C3 N2 DLH sing 174 n n C11 N2 DLH sing 175 n n C23 C24 DLH doub 176 n y N2 C10 DLH sing 177 n n C17 C14 DLH doub 178 n y C17 C19 DLH sing 179 n y C14 C18 DLH sing 180 n y C7 O4 DLH sing 181 n n C7 C21 DLH doub 182 n y C19 C15 DLH doub 183 n y C24 C21 DLH sing 184 n y C18 C20 DLH doub 185 n y C15 C20 DLH sing 186 n y C15 CL DLH sing 187 n n C10 H1 DLH sing 188 n n C10 H2 DLH sing 189 n n C11 H3 DLH sing 190 n n C11 H4 DLH sing 191 n n C17 H5 DLH sing 192 n n C18 H6 DLH sing 193 n n C19 H7 DLH sing 194 n n C20 H8 DLH sing 195 n n C21 H9 DLH sing 196 n n C22 H10 DLH sing 197 n n C23 H11 DLH sing 198 n n C24 H12 DLH sing 199 n n C12 H13 DLH sing 200 n n C12 H14 DLH sing 201 n n C8 H15 DLH sing 202 n n C8 H16 DLH sing 203 n n C9 H17 DLH sing 204 n n C9 H18 DLH sing 205 n n # _atom_sites.entry_id 6FKB _atom_sites.fract_transf_matrix[1][1] 0.004118 _atom_sites.fract_transf_matrix[1][2] 0.002377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 401 322 PLM P1L . C 3 NAG A 1 402 400 NAG NAG . D 3 NAG A 1 403 401 NAG NAG . E 4 BMA A 1 404 402 BMA BMA . F 5 MAN A 1 405 403 MAN MAN . G 5 MAN A 1 406 404 MAN MAN . H 6 BOG A 1 407 500 BOG BOG . I 6 BOG A 1 408 501 BOG BOG . J 6 BOG A 1 409 502 BOG BOG . K 6 BOG A 1 410 503 BOG BOG . L 6 BOG A 1 411 504 BOG BOG . M 7 DLH A 1 412 600 DLH L0R . N 8 HOH A 1 1000 1000 HOH HOH . N 8 HOH A 2 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DLH . . . M 7 -233.947 47.313 36.38 1 134.68 ? C10 DLH 412 A 1 HETATM 2 C C11 DLH . . . M 7 -235.738 45.768 35.591 1 131.45 ? C11 DLH 412 A 1 HETATM 3 C C15 DLH . . . M 7 -235.977 41.938 38.307 1 109.2 ? C15 DLH 412 A 1 HETATM 4 C C17 DLH . . . M 7 -235.511 42.344 36.017 1 113.51 ? C17 DLH 412 A 1 HETATM 5 C C18 DLH . . . M 7 -234.01 43.162 37.729 1 113.2 ? C18 DLH 412 A 1 HETATM 6 C C19 DLH . . . M 7 -236.337 41.791 36.981 1 108.32 ? C19 DLH 412 A 1 HETATM 7 C C20 DLH . . . M 7 -234.832 42.611 38.708 1 109.66 ? C20 DLH 412 A 1 HETATM 8 C C21 DLH . . . M 7 -237.763 50.239 37.409 1 131.53 ? C21 DLH 412 A 1 HETATM 9 C C22 DLH . . . M 7 -237.692 51.257 34.72 1 125.55 ? C22 DLH 412 A 1 HETATM 10 C C23 DLH . . . M 7 -238.378 51.919 35.746 1 126.16 ? C23 DLH 412 A 1 HETATM 11 C C24 DLH . . . M 7 -238.406 51.427 37.039 1 130.39 ? C24 DLH 412 A 1 HETATM 12 C C1 DLH . . . M 7 -235.876 48.206 35.16 1 131.86 ? C1 DLH 412 A 1 HETATM 13 C C12 DLH . . . M 7 -233.508 43.601 35.299 1 125.98 ? C12 DLH 412 A 1 HETATM 14 C C14 DLH . . . M 7 -234.354 43.022 36.388 1 118.35 ? C14 DLH 412 A 1 HETATM 15 C C3 DLH . . . M 7 -233.272 45.102 35.471 1 134.23 ? C3 DLH 412 A 1 HETATM 16 C C6 DLH . . . M 7 -237.06 50.098 35.083 1 127.92 ? C6 DLH 412 A 1 HETATM 17 C C7 DLH . . . M 7 -237.096 49.601 36.401 1 128.22 ? C7 DLH 412 A 1 HETATM 18 C C8 DLH . . . M 7 -234.37 48.303 35.29 1 132.79 ? C8 DLH 412 A 1 HETATM 19 C C9 DLH . . . M 7 -236.27 46.837 34.624 1 133.71 ? C9 DLH 412 A 1 HETATM 20 N N2 DLH . . . M 7 -234.306 45.932 36.002 1 134.56 ? N2 DLH 412 A 1 HETATM 21 O O13 DLH . . . M 7 -232.196 45.597 35.156 1 140.37 ? O13 DLH 412 A 1 HETATM 22 O O4 DLH . . . M 7 -236.392 48.435 36.468 1 126.67 ? O4 DLH 412 A 1 HETATM 23 O O5 DLH . . . M 7 -236.325 49.25 34.299 1 130.57 ? O5 DLH 412 A 1 HETATM 24 CL CL DLH . . . M 7 -237.002 41.251 39.508 1 107.39 ? CL DLH 412 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #