data_6FKD # _model_server_result.job_id E6XM2U6C1iJ61Cih7L4PTA _model_server_result.datetime_utc '2024-11-08 10:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6FKD # _exptl.entry_id 6FKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKD _cell.length_a 243.431 _cell.length_b 243.431 _cell.length_c 111.782 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 400 NAG 2 n B NAG 2 B 2 NAG A 401 NAG 2 n B BMA 3 B 3 BMA A 402 BMA 2 n B MAN 4 B 4 MAN A 403 MAN 2 n B MAN 5 B 5 MAN A 404 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 C C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 437 n n C1 O2 PLM doub 438 n n C1 C2 PLM sing 439 n n O1 H PLM sing 440 n n C2 C3 PLM sing 441 n n C2 H21 PLM sing 442 n n C2 H22 PLM sing 443 n n C3 C4 PLM sing 444 n n C3 H31 PLM sing 445 n n C3 H32 PLM sing 446 n n C4 C5 PLM sing 447 n n C4 H41 PLM sing 448 n n C4 H42 PLM sing 449 n n C5 C6 PLM sing 450 n n C5 H51 PLM sing 451 n n C5 H52 PLM sing 452 n n C6 C7 PLM sing 453 n n C6 H61 PLM sing 454 n n C6 H62 PLM sing 455 n n C7 C8 PLM sing 456 n n C7 H71 PLM sing 457 n n C7 H72 PLM sing 458 n n C8 C9 PLM sing 459 n n C8 H81 PLM sing 460 n n C8 H82 PLM sing 461 n n C9 CA PLM sing 462 n n C9 H91 PLM sing 463 n n C9 H92 PLM sing 464 n n CA CB PLM sing 465 n n CA HA1 PLM sing 466 n n CA HA2 PLM sing 467 n n CB CC PLM sing 468 n n CB HB1 PLM sing 469 n n CB HB2 PLM sing 470 n n CC CD PLM sing 471 n n CC HC1 PLM sing 472 n n CC HC2 PLM sing 473 n n CD CE PLM sing 474 n n CD HD1 PLM sing 475 n n CD HD2 PLM sing 476 n n CE CF PLM sing 477 n n CE HE1 PLM sing 478 n n CE HE2 PLM sing 479 n n CF CG PLM sing 480 n n CF HF1 PLM sing 481 n n CF HF2 PLM sing 482 n n CG HG1 PLM sing 483 n n CG HG2 PLM sing 484 n n CG HG3 PLM sing 485 n n # _atom_sites.entry_id 6FKD _atom_sites.fract_transf_matrix[1][1] 0.004108 _atom_sites.fract_transf_matrix[1][2] 0.002372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLM A 1 401 1322 PLM P1L . D 4 BOG A 1 407 500 BOG BOG . E 4 BOG A 1 408 501 BOG BOG . F 4 BOG A 1 409 502 BOG BOG . G 4 BOG A 1 410 503 BOG BOG . H 4 BOG A 1 411 504 BOG BOG . I 5 DL2 A 1 412 600 DL2 L0R . J 6 HOH A 1 501 1006 HOH HOH . J 6 HOH A 2 502 1000 HOH HOH . J 6 HOH A 3 503 1004 HOH HOH . J 6 HOH A 4 504 1011 HOH HOH . J 6 HOH A 5 505 1002 HOH HOH . J 6 HOH A 6 506 1015 HOH HOH . J 6 HOH A 7 507 1022 HOH HOH . J 6 HOH A 8 508 1001 HOH HOH . J 6 HOH A 9 509 1016 HOH HOH . J 6 HOH A 10 510 1012 HOH HOH . J 6 HOH A 11 511 1010 HOH HOH . J 6 HOH A 12 512 1007 HOH HOH . J 6 HOH A 13 513 1018 HOH HOH . J 6 HOH A 14 514 1023 HOH HOH . J 6 HOH A 15 515 1009 HOH HOH . J 6 HOH A 16 516 1003 HOH HOH . J 6 HOH A 17 517 1024 HOH HOH . J 6 HOH A 18 518 1013 HOH HOH . J 6 HOH A 19 519 1005 HOH HOH . J 6 HOH A 20 520 1014 HOH HOH . J 6 HOH A 21 521 1021 HOH HOH . J 6 HOH A 22 522 1017 HOH HOH . J 6 HOH A 23 523 1019 HOH HOH . J 6 HOH A 24 524 1008 HOH HOH . J 6 HOH A 25 525 1020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . C 3 -222.705 15.674 56.692 1 115.68 ? C1 PLM 401 A 1 HETATM 2 O O2 PLM . . . C 3 -223.775 15.776 56.087 1 110.67 ? O2 PLM 401 A 1 HETATM 3 C C2 PLM . . . C 3 -221.952 16.807 57.331 1 111.35 ? C2 PLM 401 A 1 HETATM 4 C C3 PLM . . . C 3 -220.44 16.657 57.262 1 105.81 ? C3 PLM 401 A 1 HETATM 5 C C4 PLM . . . C 3 -219.702 17.503 58.287 1 92.62 ? C4 PLM 401 A 1 HETATM 6 C C5 PLM . . . C 3 -219.954 18.992 58.121 1 84.64 ? C5 PLM 401 A 1 HETATM 7 C C6 PLM . . . C 3 -219.883 19.701 59.459 1 86.04 ? C6 PLM 401 A 1 HETATM 8 C C7 PLM . . . C 3 -219.313 21.1 59.358 1 81.93 ? C7 PLM 401 A 1 HETATM 9 C C8 PLM . . . C 3 -220.362 22.104 58.938 1 79.87 ? C8 PLM 401 A 1 HETATM 10 C C9 PLM . . . C 3 -219.912 23.526 59.218 1 78.14 ? C9 PLM 401 A 1 HETATM 11 C CA PLM . . . C 3 -220.54 24.493 58.237 1 82.6 ? CA PLM 401 A 1 HETATM 12 C CB PLM . . . C 3 -220.725 25.871 58.84 1 89.04 ? CB PLM 401 A 1 HETATM 13 C CC PLM . . . C 3 -219.403 26.573 59.07 1 89.64 ? CC PLM 401 A 1 HETATM 14 C CD PLM . . . C 3 -219.639 27.983 59.573 1 88.52 ? CD PLM 401 A 1 HETATM 15 C CE PLM . . . C 3 -218.523 28.946 59.217 1 77.83 ? CE PLM 401 A 1 HETATM 16 C CF PLM . . . C 3 -219.025 30.37 59.362 1 82.58 ? CF PLM 401 A 1 HETATM 17 C CG PLM . . . C 3 -218.027 31.408 58.922 1 68.1 ? CG PLM 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #