data_6FKF # _model_server_result.job_id ZgW7zRF9Bfx18Ah7rj9PIg _model_server_result.datetime_utc '2025-03-06 08:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":600}' # _entry.id 6FKF # _exptl.entry_id 6FKF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FKF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 26-meric _pdbx_struct_assembly.oligomeric_count 26 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 AA N N ? 10 CA N N ? 10 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 240 g CYS 240 1_555 G SG CYS 246 g CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc1 A OG1 THR 177 A THR 177 1_555 BA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 AA O2G ATP . A ATP 600 1_555 BA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc3 AA O2B ATP . A ATP 600 1_555 BA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 BA MG MG . A MG 601 1_555 KA O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 BA MG MG . A MG 601 1_555 KA O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 C OG1 THR 177 C THR 177 1_555 DA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc7 CA O2G ATP . C ATP 600 1_555 DA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc8 CA O2B ATP . C ATP 600 1_555 DA MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 DA MG MG . C MG 601 1_555 MA O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc10 D OG1 THR 179 D THR 179 1_555 FA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc11 EA O2B ADP . D ADP 600 1_555 FA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 EA O3B ADP . D ADP 600 1_555 FA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc13 FA MG MG . D MG 601 1_555 NA O HOH . D HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc14 FA MG MG . D MG 601 1_555 NA O HOH . D HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc15 E OG1 THR 177 E THR 177 1_555 HA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc16 GA O2G ATP . E ATP 600 1_555 HA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 GA O2B ATP . E ATP 600 1_555 HA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc18 HA MG MG . E MG 601 1_555 OA O HOH . E HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc19 F OG1 THR 179 F THR 179 1_555 JA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc20 IA O2B ADP . F ADP 600 1_555 JA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc21 JA MG MG . F MG 601 1_555 PA O HOH . F HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc22 JA MG MG . F MG 601 1_555 PA O HOH . F HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6FKF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 10 ATP A 1 600 600 ATP ATP . BA 11 MG A 1 601 601 MG MG . CA 10 ATP C 1 600 600 ATP ATP . DA 11 MG C 1 601 601 MG MG . EA 12 ADP D 1 600 600 ADP ADP . FA 11 MG D 1 601 601 MG MG . GA 10 ATP E 1 600 600 ATP ATP . HA 11 MG E 1 601 601 MG MG . IA 12 ADP F 1 600 600 ADP ADP . JA 11 MG F 1 601 601 MG MG . KA 13 HOH A 1 701 2 HOH HOH . KA 13 HOH A 2 702 1 HOH HOH . LA 13 HOH B 1 501 805 HOH HOH . MA 13 HOH C 1 701 800 HOH HOH . MA 13 HOH C 2 702 804 HOH HOH . MA 13 HOH C 3 703 802 HOH HOH . MA 13 HOH C 4 704 801 HOH HOH . MA 13 HOH C 5 705 803 HOH HOH . MA 13 HOH C 6 706 806 HOH HOH . NA 13 HOH D 1 801 801 HOH HOH . NA 13 HOH D 2 802 802 HOH HOH . NA 13 HOH D 3 803 807 HOH HOH . NA 13 HOH D 4 804 804 HOH HOH . NA 13 HOH D 5 805 806 HOH HOH . OA 13 HOH E 1 701 803 HOH HOH . OA 13 HOH E 2 702 801 HOH HOH . OA 13 HOH E 3 703 802 HOH HOH . OA 13 HOH E 4 704 814 HOH HOH . OA 13 HOH E 5 705 813 HOH HOH . OA 13 HOH E 6 706 811 HOH HOH . OA 13 HOH E 7 707 812 HOH HOH . PA 13 HOH F 1 801 801 HOH HOH . PA 13 HOH F 2 802 802 HOH HOH . PA 13 HOH F 3 803 806 HOH HOH . PA 13 HOH F 4 804 807 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . AA 10 188.053 211.574 231.493 1 6.77 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . AA 10 188.959 210.394 231.601 1 6.77 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . AA 10 186.791 211.438 232.287 1 6.77 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . AA 10 188.733 212.901 231.616 1 6.77 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . AA 10 186.54 212.486 229.299 1 6.77 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . AA 10 185.502 211.64 228.639 1 6.77 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . AA 10 186.218 213.524 230.323 1 6.77 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . AA 10 187.595 211.492 229.962 1 6.77 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . AA 10 187.478 214.598 227.611 1 6.77 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . AA 10 186.131 215.186 227.367 1 6.77 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . AA 10 188.456 215.34 228.47 1 6.77 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . AA 10 187.402 213.075 228.094 1 6.77 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . AA 10 188.126 214.296 226.194 1 6.77 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . AA 10 189.345 213.571 226.113 1 6.77 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . AA 10 190.222 214.218 225.057 1 6.77 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . AA 10 189.551 214.169 223.804 1 6.77 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . AA 10 190.438 215.68 225.388 1 6.77 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . AA 10 191.823 215.993 225.294 1 6.77 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . AA 10 189.673 216.449 224.339 1 6.77 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . AA 10 190.428 217.578 223.936 1 6.77 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . AA 10 189.498 215.462 223.209 1 6.77 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . AA 10 188.198 215.655 222.532 1 6.77 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . AA 10 186.989 215.643 223.102 1 6.77 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . AA 10 186.014 215.842 222.183 1 6.77 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . AA 10 186.606 215.99 220.992 1 6.77 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . AA 10 186.186 216.233 219.601 1 6.77 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . AA 10 184.888 216.37 219.258 1 6.77 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . AA 10 187.145 216.318 218.666 1 6.77 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . AA 10 188.445 216.192 218.961 1 6.77 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . AA 10 188.895 215.969 220.195 1 6.77 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . AA 10 188.043 215.867 221.233 1 6.77 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #