data_6FKG # _model_server_result.job_id W2_VVrDMRGiqq2cqd2-dpA _model_server_result.datetime_utc '2024-11-14 17:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6FKG # _exptl.entry_id 6FKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKG _cell.length_a 105.311 _cell.length_b 105.311 _cell.length_c 108.712 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.6555 91.202001 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.6555 91.202001 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6FKG _atom_sites.fract_transf_matrix[1][1] 0.009496 _atom_sites.fract_transf_matrix[1][2] 0.005482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL B 1 201 1 GOL GOL . F 3 GOL B 1 202 3 GOL GOL . G 3 GOL C 1 201 2 GOL GOL . H 4 HOH A 1 201 495 HOH HOH . H 4 HOH A 2 202 290 HOH HOH . H 4 HOH A 3 203 215 HOH HOH . H 4 HOH A 4 204 144 HOH HOH . H 4 HOH A 5 205 193 HOH HOH . H 4 HOH A 6 206 172 HOH HOH . H 4 HOH A 7 207 65 HOH HOH . H 4 HOH A 8 208 63 HOH HOH . H 4 HOH A 9 209 320 HOH HOH . H 4 HOH A 10 210 10 HOH HOH . H 4 HOH A 11 211 74 HOH HOH . H 4 HOH A 12 212 78 HOH HOH . H 4 HOH A 13 213 57 HOH HOH . H 4 HOH A 14 214 374 HOH HOH . H 4 HOH A 15 215 21 HOH HOH . H 4 HOH A 16 216 347 HOH HOH . H 4 HOH A 17 217 188 HOH HOH . H 4 HOH A 18 218 171 HOH HOH . H 4 HOH A 19 219 300 HOH HOH . H 4 HOH A 20 220 18 HOH HOH . H 4 HOH A 21 221 40 HOH HOH . H 4 HOH A 22 222 133 HOH HOH . H 4 HOH A 23 223 99 HOH HOH . H 4 HOH A 24 224 131 HOH HOH . H 4 HOH A 25 225 90 HOH HOH . H 4 HOH A 26 226 49 HOH HOH . H 4 HOH A 27 227 15 HOH HOH . H 4 HOH A 28 228 166 HOH HOH . H 4 HOH A 29 229 258 HOH HOH . H 4 HOH A 30 230 186 HOH HOH . H 4 HOH A 31 231 168 HOH HOH . H 4 HOH A 32 232 140 HOH HOH . H 4 HOH A 33 233 122 HOH HOH . H 4 HOH A 34 234 234 HOH HOH . H 4 HOH A 35 235 149 HOH HOH . H 4 HOH A 36 236 228 HOH HOH . H 4 HOH A 37 237 264 HOH HOH . H 4 HOH A 38 238 183 HOH HOH . H 4 HOH A 39 239 104 HOH HOH . H 4 HOH A 40 240 396 HOH HOH . H 4 HOH A 41 241 79 HOH HOH . H 4 HOH A 42 242 43 HOH HOH . H 4 HOH A 43 243 232 HOH HOH . H 4 HOH A 44 244 308 HOH HOH . H 4 HOH A 45 245 32 HOH HOH . H 4 HOH A 46 246 22 HOH HOH . H 4 HOH A 47 247 380 HOH HOH . H 4 HOH A 48 248 29 HOH HOH . H 4 HOH A 49 249 345 HOH HOH . H 4 HOH A 50 250 241 HOH HOH . H 4 HOH A 51 251 126 HOH HOH . H 4 HOH A 52 252 178 HOH HOH . H 4 HOH A 53 253 179 HOH HOH . H 4 HOH A 54 254 128 HOH HOH . H 4 HOH A 55 255 201 HOH HOH . H 4 HOH A 56 256 17 HOH HOH . H 4 HOH A 57 257 28 HOH HOH . H 4 HOH A 58 258 195 HOH HOH . H 4 HOH A 59 259 371 HOH HOH . H 4 HOH A 60 260 293 HOH HOH . H 4 HOH A 61 261 218 HOH HOH . H 4 HOH A 62 262 53 HOH HOH . H 4 HOH A 63 263 96 HOH HOH . H 4 HOH A 64 264 134 HOH HOH . H 4 HOH A 65 265 280 HOH HOH . H 4 HOH A 66 266 146 HOH HOH . H 4 HOH A 67 267 118 HOH HOH . H 4 HOH A 68 268 395 HOH HOH . H 4 HOH A 69 269 318 HOH HOH . H 4 HOH A 70 270 349 HOH HOH . H 4 HOH A 71 271 298 HOH HOH . H 4 HOH A 72 272 182 HOH HOH . H 4 HOH A 73 273 337 HOH HOH . H 4 HOH A 74 274 187 HOH HOH . H 4 HOH A 75 275 336 HOH HOH . I 4 HOH B 1 301 496 HOH HOH . I 4 HOH B 2 302 147 HOH HOH . I 4 HOH B 3 303 137 HOH HOH . I 4 HOH B 4 304 85 HOH HOH . I 4 HOH B 5 305 338 HOH HOH . I 4 HOH B 6 306 75 HOH HOH . I 4 HOH B 7 307 8 HOH HOH . I 4 HOH B 8 308 139 HOH HOH . I 4 HOH B 9 309 56 HOH HOH . I 4 HOH B 10 310 3 HOH HOH . I 4 HOH B 11 311 328 HOH HOH . I 4 HOH B 12 312 91 HOH HOH . I 4 HOH B 13 313 373 HOH HOH . I 4 HOH B 14 314 302 HOH HOH . I 4 HOH B 15 315 73 HOH HOH . I 4 HOH B 16 316 1 HOH HOH . I 4 HOH B 17 317 55 HOH HOH . I 4 HOH B 18 318 161 HOH HOH . I 4 HOH B 19 319 120 HOH HOH . I 4 HOH B 20 320 88 HOH HOH . I 4 HOH B 21 321 31 HOH HOH . I 4 HOH B 22 322 64 HOH HOH . I 4 HOH B 23 323 24 HOH HOH . I 4 HOH B 24 324 119 HOH HOH . I 4 HOH B 25 325 16 HOH HOH . I 4 HOH B 26 326 62 HOH HOH . I 4 HOH B 27 327 236 HOH HOH . I 4 HOH B 28 328 80 HOH HOH . I 4 HOH B 29 329 2 HOH HOH . I 4 HOH B 30 330 11 HOH HOH . I 4 HOH B 31 331 414 HOH HOH . I 4 HOH B 32 332 254 HOH HOH . I 4 HOH B 33 333 159 HOH HOH . I 4 HOH B 34 334 37 HOH HOH . I 4 HOH B 35 335 304 HOH HOH . I 4 HOH B 36 336 77 HOH HOH . I 4 HOH B 37 337 87 HOH HOH . I 4 HOH B 38 338 194 HOH HOH . I 4 HOH B 39 339 13 HOH HOH . I 4 HOH B 40 340 103 HOH HOH . I 4 HOH B 41 341 276 HOH HOH . I 4 HOH B 42 342 86 HOH HOH . I 4 HOH B 43 343 20 HOH HOH . I 4 HOH B 44 344 66 HOH HOH . I 4 HOH B 45 345 111 HOH HOH . I 4 HOH B 46 346 167 HOH HOH . I 4 HOH B 47 347 285 HOH HOH . I 4 HOH B 48 348 14 HOH HOH . I 4 HOH B 49 349 440 HOH HOH . I 4 HOH B 50 350 306 HOH HOH . I 4 HOH B 51 351 34 HOH HOH . I 4 HOH B 52 352 165 HOH HOH . I 4 HOH B 53 353 208 HOH HOH . I 4 HOH B 54 354 58 HOH HOH . I 4 HOH B 55 355 50 HOH HOH . I 4 HOH B 56 356 230 HOH HOH . I 4 HOH B 57 357 60 HOH HOH . I 4 HOH B 58 358 244 HOH HOH . I 4 HOH B 59 359 156 HOH HOH . I 4 HOH B 60 360 151 HOH HOH . I 4 HOH B 61 361 94 HOH HOH . I 4 HOH B 62 362 109 HOH HOH . I 4 HOH B 63 363 196 HOH HOH . I 4 HOH B 64 364 198 HOH HOH . I 4 HOH B 65 365 132 HOH HOH . I 4 HOH B 66 366 142 HOH HOH . I 4 HOH B 67 367 136 HOH HOH . I 4 HOH B 68 368 203 HOH HOH . I 4 HOH B 69 369 237 HOH HOH . I 4 HOH B 70 370 116 HOH HOH . I 4 HOH B 71 371 153 HOH HOH . I 4 HOH B 72 372 221 HOH HOH . I 4 HOH B 73 373 127 HOH HOH . I 4 HOH B 74 374 211 HOH HOH . J 4 HOH C 1 301 231 HOH HOH . J 4 HOH C 2 302 225 HOH HOH . J 4 HOH C 3 303 330 HOH HOH . J 4 HOH C 4 304 184 HOH HOH . J 4 HOH C 5 305 350 HOH HOH . J 4 HOH C 6 306 326 HOH HOH . J 4 HOH C 7 307 135 HOH HOH . J 4 HOH C 8 308 164 HOH HOH . J 4 HOH C 9 309 252 HOH HOH . J 4 HOH C 10 310 239 HOH HOH . J 4 HOH C 11 311 279 HOH HOH . J 4 HOH C 12 312 240 HOH HOH . J 4 HOH C 13 313 108 HOH HOH . J 4 HOH C 14 314 214 HOH HOH . J 4 HOH C 15 315 30 HOH HOH . J 4 HOH C 16 316 158 HOH HOH . J 4 HOH C 17 317 299 HOH HOH . J 4 HOH C 18 318 7 HOH HOH . J 4 HOH C 19 319 4 HOH HOH . J 4 HOH C 20 320 173 HOH HOH . J 4 HOH C 21 321 157 HOH HOH . J 4 HOH C 22 322 68 HOH HOH . J 4 HOH C 23 323 431 HOH HOH . J 4 HOH C 24 324 42 HOH HOH . J 4 HOH C 25 325 124 HOH HOH . J 4 HOH C 26 326 180 HOH HOH . J 4 HOH C 27 327 141 HOH HOH . J 4 HOH C 28 328 95 HOH HOH . J 4 HOH C 29 329 249 HOH HOH . J 4 HOH C 30 330 67 HOH HOH . J 4 HOH C 31 331 441 HOH HOH . J 4 HOH C 32 332 205 HOH HOH . J 4 HOH C 33 333 110 HOH HOH . J 4 HOH C 34 334 5 HOH HOH . J 4 HOH C 35 335 100 HOH HOH . J 4 HOH C 36 336 44 HOH HOH . J 4 HOH C 37 337 348 HOH HOH . J 4 HOH C 38 338 202 HOH HOH . J 4 HOH C 39 339 72 HOH HOH . J 4 HOH C 40 340 117 HOH HOH . J 4 HOH C 41 341 377 HOH HOH . J 4 HOH C 42 342 121 HOH HOH . J 4 HOH C 43 343 163 HOH HOH . J 4 HOH C 44 344 217 HOH HOH . J 4 HOH C 45 345 92 HOH HOH . J 4 HOH C 46 346 71 HOH HOH . J 4 HOH C 47 347 219 HOH HOH . J 4 HOH C 48 348 123 HOH HOH . J 4 HOH C 49 349 192 HOH HOH . J 4 HOH C 50 350 267 HOH HOH . J 4 HOH C 51 351 19 HOH HOH . J 4 HOH C 52 352 59 HOH HOH . J 4 HOH C 53 353 370 HOH HOH . J 4 HOH C 54 354 41 HOH HOH . J 4 HOH C 55 355 233 HOH HOH . J 4 HOH C 56 356 35 HOH HOH . J 4 HOH C 57 357 46 HOH HOH . J 4 HOH C 58 358 145 HOH HOH . J 4 HOH C 59 359 321 HOH HOH . J 4 HOH C 60 360 476 HOH HOH . J 4 HOH C 61 361 351 HOH HOH . J 4 HOH C 62 362 176 HOH HOH . J 4 HOH C 63 363 52 HOH HOH . J 4 HOH C 64 364 314 HOH HOH . J 4 HOH C 65 365 175 HOH HOH . J 4 HOH C 66 366 475 HOH HOH . J 4 HOH C 67 367 107 HOH HOH . J 4 HOH C 68 368 296 HOH HOH . J 4 HOH C 69 369 170 HOH HOH . J 4 HOH C 70 370 36 HOH HOH . J 4 HOH C 71 371 471 HOH HOH . J 4 HOH C 72 372 113 HOH HOH . J 4 HOH C 73 373 283 HOH HOH . J 4 HOH C 74 374 115 HOH HOH . K 4 HOH D 1 201 224 HOH HOH . K 4 HOH D 2 202 125 HOH HOH . K 4 HOH D 3 203 270 HOH HOH . K 4 HOH D 4 204 155 HOH HOH . K 4 HOH D 5 205 250 HOH HOH . K 4 HOH D 6 206 177 HOH HOH . K 4 HOH D 7 207 38 HOH HOH . K 4 HOH D 8 208 235 HOH HOH . K 4 HOH D 9 209 12 HOH HOH . K 4 HOH D 10 210 329 HOH HOH . K 4 HOH D 11 211 227 HOH HOH . K 4 HOH D 12 212 76 HOH HOH . K 4 HOH D 13 213 6 HOH HOH . K 4 HOH D 14 214 97 HOH HOH . K 4 HOH D 15 215 112 HOH HOH . K 4 HOH D 16 216 322 HOH HOH . K 4 HOH D 17 217 23 HOH HOH . K 4 HOH D 18 218 25 HOH HOH . K 4 HOH D 19 219 98 HOH HOH . K 4 HOH D 20 220 45 HOH HOH . K 4 HOH D 21 221 384 HOH HOH . K 4 HOH D 22 222 403 HOH HOH . K 4 HOH D 23 223 448 HOH HOH . K 4 HOH D 24 224 317 HOH HOH . K 4 HOH D 25 225 301 HOH HOH . K 4 HOH D 26 226 181 HOH HOH . K 4 HOH D 27 227 51 HOH HOH . K 4 HOH D 28 228 102 HOH HOH . K 4 HOH D 29 229 263 HOH HOH . K 4 HOH D 30 230 70 HOH HOH . K 4 HOH D 31 231 84 HOH HOH . K 4 HOH D 32 232 39 HOH HOH . K 4 HOH D 33 233 199 HOH HOH . K 4 HOH D 34 234 162 HOH HOH . K 4 HOH D 35 235 26 HOH HOH . K 4 HOH D 36 236 251 HOH HOH . K 4 HOH D 37 237 206 HOH HOH . K 4 HOH D 38 238 27 HOH HOH . K 4 HOH D 39 239 47 HOH HOH . K 4 HOH D 40 240 54 HOH HOH . K 4 HOH D 41 241 61 HOH HOH . K 4 HOH D 42 242 200 HOH HOH . K 4 HOH D 43 243 48 HOH HOH . K 4 HOH D 44 244 174 HOH HOH . K 4 HOH D 45 245 402 HOH HOH . K 4 HOH D 46 246 33 HOH HOH . K 4 HOH D 47 247 381 HOH HOH . K 4 HOH D 48 248 284 HOH HOH . K 4 HOH D 49 249 305 HOH HOH . K 4 HOH D 50 250 282 HOH HOH . K 4 HOH D 51 251 313 HOH HOH . K 4 HOH D 52 252 197 HOH HOH . K 4 HOH D 53 253 413 HOH HOH . K 4 HOH D 54 254 114 HOH HOH . K 4 HOH D 55 255 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -20.551 11.159 36.081 1 67.51 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . F 3 -20.903 12.521 36.14 1 65.25 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . F 3 -19.053 10.97 36.327 1 70.22 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . F 3 -18.548 11.865 37.298 1 56.46 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . F 3 -18.26 11.08 35.029 1 65.6 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . F 3 -17.022 10.42 35.191 1 57.93 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #