data_6FKY
#
_model_server_result.job_id            2-5KcLa774C9NkGjpabeWg 
_model_server_result.datetime_utc      '2024-11-06 09:22:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    6FKY 
#
_exptl.entry_id    6FKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.276 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{R})-2-(phenylmethylsulfanyl)butanedioic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FKY 
_cell.length_a            87.134 
_cell.length_b            87.134 
_cell.length_c            316.677 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J,K,L 1 1 
B,F,G,H,I,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 253 A CYS 274 1_555 B SG CYS 253 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 C C GZB 1 C GZB 1 1_555 C N VAL 2 C VAL 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 C NZ LYS 4 C LYS 4 1_555 J CAJ E9N . C E9N 101 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 D C GZB 1 I GZB 1 1_555 D N VAL 2 I VAL 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 D NZ LYS 4 I LYS 4 1_555 K CAJ DZK . I DZK 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A SG CYS 141 A CYS 162 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 A SG CYS 144 A CYS 165 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A SG CYS 182 A CYS 203 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc4 A SG CYS 187 A CYS 208 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc5 B SG CYS 141 B CYS 162 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc6 B SG CYS 144 B CYS 165 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc7 B SG CYS 182 B CYS 203 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc8 B SG CYS 187 B CYS 208 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc9 B OD1 ASP 203 B ASP 224 1_555 H NA NA . B NA 403 12_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc10 B OD2 ASP 205 B ASP 226 1_555 H NA NA . B NA 403 12_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
#
_chem_comp.formula           'C11 H12 O4 S' 
_chem_comp.formula_weight    240.276 
_chem_comp.id                E9N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{R})-2-(phenylmethylsulfanyl)butanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAT CAS E9N doub 111 n y 
CAT CAU E9N sing 112 n y 
CAS CAX E9N sing 113 n y 
CAU CAV E9N doub 114 n y 
CAX CAW E9N doub 115 n y 
OAP CAN E9N doub 116 n n 
CAV CAW E9N sing 117 n y 
CAW CAR E9N sing 118 n n 
CAN CAM E9N sing 119 n n 
CAN OAO E9N sing 120 n n 
CAM SAQ E9N sing 121 n n 
CAM CAK E9N sing 122 n n 
CAR SAQ E9N sing 123 n n 
CAK CAJ E9N sing 124 n n 
OAL CAJ E9N sing 125 n n 
CAK H2 E9N sing 126 n n 
CAM H3 E9N sing 127 n n 
OAO H4 E9N sing 128 n n 
CAR H5 E9N sing 129 n n 
CAR H6 E9N sing 130 n n 
CAV H7 E9N sing 131 n n 
CAU H8 E9N sing 132 n n 
CAT H9 E9N sing 133 n n 
CAS H10 E9N sing 134 n n 
CAX H11 E9N sing 135 n n 
CAJ O1 E9N doub 136 n n 
OAL H1 E9N sing 137 n n 
CAK H12 E9N sing 138 n n 
#
_atom_sites.entry_id                     6FKY 
_atom_sites.fract_transf_matrix[1][1]    0.011477 
_atom_sites.fract_transf_matrix[1][2]    0.006626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 401 1 ZN ZN . 
F 3 ZN B 1 401 2 ZN ZN . 
G 4 EPE B 1 402 1 EPE EPE . 
H 5 NA B 1 403 1 NA NA . 
I 6 EDO B 1 404 1 EDO EDO . 
J 7 E9N C 1 101 10 E9N DRG . 
K 8 DZK I 1 101 10 DZK BSL . 
L 9 HOH A 1 501 32 HOH HOH . 
L 9 HOH A 2 502 11 HOH HOH . 
L 9 HOH A 3 503 56 HOH HOH . 
L 9 HOH A 4 504 8 HOH HOH . 
L 9 HOH A 5 505 7 HOH HOH . 
L 9 HOH A 6 506 22 HOH HOH . 
L 9 HOH A 7 507 43 HOH HOH . 
L 9 HOH A 8 508 16 HOH HOH . 
L 9 HOH A 9 509 24 HOH HOH . 
L 9 HOH A 10 510 19 HOH HOH . 
L 9 HOH A 11 511 40 HOH HOH . 
L 9 HOH A 12 512 50 HOH HOH . 
L 9 HOH A 13 513 5 HOH HOH . 
L 9 HOH A 14 514 45 HOH HOH . 
L 9 HOH A 15 515 23 HOH HOH . 
L 9 HOH A 16 516 48 HOH HOH . 
L 9 HOH A 17 517 13 HOH HOH . 
L 9 HOH A 18 518 14 HOH HOH . 
L 9 HOH A 19 519 51 HOH HOH . 
L 9 HOH A 20 520 9 HOH HOH . 
L 9 HOH A 21 521 59 HOH HOH . 
L 9 HOH A 22 522 26 HOH HOH . 
L 9 HOH A 23 523 52 HOH HOH . 
L 9 HOH A 24 524 58 HOH HOH . 
L 9 HOH A 25 525 25 HOH HOH . 
L 9 HOH A 26 526 4 HOH HOH . 
L 9 HOH A 27 527 47 HOH HOH . 
L 9 HOH A 28 528 44 HOH HOH . 
L 9 HOH A 29 529 38 HOH HOH . 
L 9 HOH A 30 530 3 HOH HOH . 
L 9 HOH A 31 531 15 HOH HOH . 
L 9 HOH A 32 532 42 HOH HOH . 
L 9 HOH A 33 533 30 HOH HOH . 
L 9 HOH A 34 534 12 HOH HOH . 
L 9 HOH A 35 535 17 HOH HOH . 
M 9 HOH B 1 501 33 HOH HOH . 
M 9 HOH B 2 502 39 HOH HOH . 
M 9 HOH B 3 503 46 HOH HOH . 
M 9 HOH B 4 504 10 HOH HOH . 
M 9 HOH B 5 505 54 HOH HOH . 
M 9 HOH B 6 506 55 HOH HOH . 
M 9 HOH B 7 507 2 HOH HOH . 
M 9 HOH B 8 508 6 HOH HOH . 
M 9 HOH B 9 509 29 HOH HOH . 
M 9 HOH B 10 510 31 HOH HOH . 
M 9 HOH B 11 511 41 HOH HOH . 
M 9 HOH B 12 512 27 HOH HOH . 
M 9 HOH B 13 513 18 HOH HOH . 
M 9 HOH B 14 514 53 HOH HOH . 
M 9 HOH B 15 515 1 HOH HOH . 
M 9 HOH B 16 516 49 HOH HOH . 
M 9 HOH B 17 517 57 HOH HOH . 
M 9 HOH B 18 518 36 HOH HOH . 
M 9 HOH B 19 519 35 HOH HOH . 
M 9 HOH B 20 520 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAJ E9N . A . J 7 30.953 24.592 -4.495 0.5 78.62 ? CAJ E9N 101 C 1 
HETATM 2 O OAL E9N . A . J 7 29.746 24.845 -4.528 0.5 75.04 ? OAL E9N 101 C 1 
HETATM 3 C CAK E9N . A . J 7 31.834 24.772 -5.729 0.5 79.34 ? CAK E9N 101 C 1 
HETATM 4 C CAM E9N . A . J 7 30.971 25.396 -6.827 0.5 82.16 ? CAM E9N 101 C 1 
HETATM 5 C CAN E9N . A . J 7 31.523 26.777 -7.16 0.5 72.77 ? CAN E9N 101 C 1 
HETATM 6 O OAP E9N . A . J 7 31.264 27.229 -8.286 0.5 60.67 ? OAP E9N 101 C 1 
HETATM 7 O OAO E9N . A . J 7 32.17 27.36 -6.266 0.5 69.84 ? OAO E9N 101 C 1 
HETATM 8 S SAQ E9N . A . J 7 29.284 25.588 -6.252 0.5 98.97 ? SAQ E9N 101 C 1 
HETATM 9 C CAR E9N . A . J 7 28.534 23.909 -6.441 0.5 98.26 ? CAR E9N 101 C 1 
HETATM 10 C CAW E9N . A . J 7 27.711 23.737 -7.572 0.5 97.87 ? CAW E9N 101 C 1 
HETATM 11 C CAV E9N . A . J 7 26.78 24.704 -7.959 0.5 96.13 ? CAV E9N 101 C 1 
HETATM 12 C CAU E9N . A . J 7 25.968 24.529 -9.083 0.5 91.99 ? CAU E9N 101 C 1 
HETATM 13 C CAT E9N . A . J 7 26.081 23.371 -9.826 0.5 92.45 ? CAT E9N 101 C 1 
HETATM 14 C CAS E9N . A . J 7 27.008 22.401 -9.443 0.5 96.13 ? CAS E9N 101 C 1 
HETATM 15 C CAX E9N . A . J 7 27.819 22.575 -8.324 0.5 95.87 ? CAX E9N 101 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#