data_6FKZ # _model_server_result.job_id '_A39kbNrlrA-FfqkJcp7Jg' _model_server_result.datetime_utc '2024-11-06 11:28:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 6FKZ # _exptl.entry_id 6FKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FKZ _cell.length_a 87.22 _cell.length_b 87.22 _cell.length_c 318.85 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 274 1_555 B SG CYS 253 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C C GZB 1 E GZB 1 1_555 C N VAL 2 E VAL 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale2 C C LEU 3 E LEU 3 1_555 C N DQK 4 E DQK 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C DQK 4 E DQK 4 1_555 C N GLU 5 E GLU 5 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C GZB 1 H GZB 1 1_555 D N VAL 2 H VAL 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale5 D C LEU 3 H LEU 3 1_555 D N EYZ 4 H EYZ 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale6 D C EYZ 4 H EYZ 4 1_555 D N GLU 5 H GLU 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 141 A CYS 162 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A SG CYS 144 A CYS 165 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A SG CYS 182 A CYS 203 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A SG CYS 187 A CYS 208 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 B SG CYS 141 B CYS 162 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 B SG CYS 144 B CYS 165 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.342 ? metalc ? metalc7 B SG CYS 182 B CYS 203 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 B SG CYS 187 B CYS 208 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 260 n n C1 C2 GOL sing 261 n n C1 H11 GOL sing 262 n n C1 H12 GOL sing 263 n n O1 HO1 GOL sing 264 n n C2 O2 GOL sing 265 n n C2 C3 GOL sing 266 n n C2 H2 GOL sing 267 n n O2 HO2 GOL sing 268 n n C3 O3 GOL sing 269 n n C3 H31 GOL sing 270 n n C3 H32 GOL sing 271 n n O3 HO3 GOL sing 272 n n # _atom_sites.entry_id 6FKZ _atom_sites.fract_transf_matrix[1][1] 0.011465 _atom_sites.fract_transf_matrix[1][2] 0.006619 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 401 1 ZN ZN . F 5 GOL A 1 402 1 GOL GOL . G 4 ZN B 1 401 2 ZN ZN . H 6 EPE B 1 402 1 EPE EPE . I 7 HOH A 1 501 30 HOH HOH . I 7 HOH A 2 502 6 HOH HOH . I 7 HOH A 3 503 7 HOH HOH . I 7 HOH A 4 504 49 HOH HOH . I 7 HOH A 5 505 26 HOH HOH . I 7 HOH A 6 506 4 HOH HOH . I 7 HOH A 7 507 43 HOH HOH . I 7 HOH A 8 508 42 HOH HOH . I 7 HOH A 9 509 5 HOH HOH . I 7 HOH A 10 510 32 HOH HOH . I 7 HOH A 11 511 28 HOH HOH . I 7 HOH A 12 512 14 HOH HOH . I 7 HOH A 13 513 10 HOH HOH . I 7 HOH A 14 514 48 HOH HOH . I 7 HOH A 15 515 8 HOH HOH . I 7 HOH A 16 516 46 HOH HOH . I 7 HOH A 17 517 20 HOH HOH . I 7 HOH A 18 518 34 HOH HOH . I 7 HOH A 19 519 27 HOH HOH . I 7 HOH A 20 520 47 HOH HOH . I 7 HOH A 21 521 39 HOH HOH . I 7 HOH A 22 522 19 HOH HOH . I 7 HOH A 23 523 45 HOH HOH . I 7 HOH A 24 524 2 HOH HOH . I 7 HOH A 25 525 21 HOH HOH . I 7 HOH A 26 526 31 HOH HOH . I 7 HOH A 27 527 35 HOH HOH . I 7 HOH A 28 528 36 HOH HOH . I 7 HOH A 29 529 37 HOH HOH . I 7 HOH A 30 530 38 HOH HOH . J 7 HOH B 1 501 17 HOH HOH . J 7 HOH B 2 502 9 HOH HOH . J 7 HOH B 3 503 33 HOH HOH . J 7 HOH B 4 504 23 HOH HOH . J 7 HOH B 5 505 11 HOH HOH . J 7 HOH B 6 506 1 HOH HOH . J 7 HOH B 7 507 24 HOH HOH . J 7 HOH B 8 508 22 HOH HOH . J 7 HOH B 9 509 3 HOH HOH . J 7 HOH B 10 510 25 HOH HOH . J 7 HOH B 11 511 40 HOH HOH . J 7 HOH B 12 512 41 HOH HOH . J 7 HOH B 13 513 18 HOH HOH . K 7 HOH E 1 101 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 29.611 49.216 -9.445 1 64.01 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . F 5 28.506 48.298 -9.424 1 63.21 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . F 5 30.663 48.778 -10.477 1 64.09 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . F 5 30.712 47.342 -10.605 1 60.19 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . F 5 32.045 49.365 -10.133 1 64.17 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . F 5 33.12 48.605 -10.713 1 62.85 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #