data_6FLD # _model_server_result.job_id 9A6RbV0VUKsKvEFTH110Xw _model_server_result.datetime_utc '2024-11-27 18:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6FLD # _exptl.entry_id 6FLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FLD _cell.length_a 114.01 _cell.length_b 114.01 _cell.length_c 136.98 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_767 -x+2,-x+y+1,-z+7/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 171.015 98.735556 319.62 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 67 1_555 A SG CYS 91 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 251 A CYS 254 1_555 A SG CYS 262 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 56 A ASN 59 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 A C GLU 196 A GLU 199 1_555 A N BXT 197 A BXT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A C BXT 197 A BXT 200 1_555 A N ALA 198 A ALA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A ND2 ASN 413 A ASN 416 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 454 A ASN 457 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FLD _atom_sites.fract_transf_matrix[1][1] 0.008771 _atom_sites.fract_transf_matrix[1][2] 0.005064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 560 NAG NAG . C 2 NAG A 1 602 561 NAG NAG . D 2 NAG A 1 603 562 NAG NAG . E 3 DQ5 A 1 604 550 DQ5 KM4 . F 4 1PG A 1 605 1 1PG PG5 . G 5 CL A 1 606 1 CL CL . H 5 CL A 1 607 2 CL CL . I 5 CL A 1 608 4 CL CL . J 5 CL A 1 609 5 CL CL . K 5 CL A 1 610 6 CL CL . L 6 EDO A 1 611 1 EDO EDO . M 6 EDO A 1 612 2 EDO EDO . N 6 EDO A 1 613 3 EDO EDO . O 7 HOH A 1 701 210 HOH HOH . O 7 HOH A 2 702 31 HOH HOH . O 7 HOH A 3 703 129 HOH HOH . O 7 HOH A 4 704 88 HOH HOH . O 7 HOH A 5 705 106 HOH HOH . O 7 HOH A 6 706 147 HOH HOH . O 7 HOH A 7 707 167 HOH HOH . O 7 HOH A 8 708 87 HOH HOH . O 7 HOH A 9 709 194 HOH HOH . O 7 HOH A 10 710 182 HOH HOH . O 7 HOH A 11 711 150 HOH HOH . O 7 HOH A 12 712 62 HOH HOH . O 7 HOH A 13 713 13 HOH HOH . O 7 HOH A 14 714 18 HOH HOH . O 7 HOH A 15 715 200 HOH HOH . O 7 HOH A 16 716 48 HOH HOH . O 7 HOH A 17 717 69 HOH HOH . O 7 HOH A 18 718 32 HOH HOH . O 7 HOH A 19 719 145 HOH HOH . O 7 HOH A 20 720 7 HOH HOH . O 7 HOH A 21 721 203 HOH HOH . O 7 HOH A 22 722 16 HOH HOH . O 7 HOH A 23 723 139 HOH HOH . O 7 HOH A 24 724 66 HOH HOH . O 7 HOH A 25 725 211 HOH HOH . O 7 HOH A 26 726 91 HOH HOH . O 7 HOH A 27 727 57 HOH HOH . O 7 HOH A 28 728 55 HOH HOH . O 7 HOH A 29 729 141 HOH HOH . O 7 HOH A 30 730 41 HOH HOH . O 7 HOH A 31 731 30 HOH HOH . O 7 HOH A 32 732 14 HOH HOH . O 7 HOH A 33 733 12 HOH HOH . O 7 HOH A 34 734 1 HOH HOH . O 7 HOH A 35 735 146 HOH HOH . O 7 HOH A 36 736 5 HOH HOH . O 7 HOH A 37 737 17 HOH HOH . O 7 HOH A 38 738 195 HOH HOH . O 7 HOH A 39 739 4 HOH HOH . O 7 HOH A 40 740 20 HOH HOH . O 7 HOH A 41 741 189 HOH HOH . O 7 HOH A 42 742 34 HOH HOH . O 7 HOH A 43 743 110 HOH HOH . O 7 HOH A 44 744 138 HOH HOH . O 7 HOH A 45 745 172 HOH HOH . O 7 HOH A 46 746 192 HOH HOH . O 7 HOH A 47 747 10 HOH HOH . O 7 HOH A 48 748 116 HOH HOH . O 7 HOH A 49 749 179 HOH HOH . O 7 HOH A 50 750 79 HOH HOH . O 7 HOH A 51 751 42 HOH HOH . O 7 HOH A 52 752 37 HOH HOH . O 7 HOH A 53 753 6 HOH HOH . O 7 HOH A 54 754 155 HOH HOH . O 7 HOH A 55 755 24 HOH HOH . O 7 HOH A 56 756 180 HOH HOH . O 7 HOH A 57 757 11 HOH HOH . O 7 HOH A 58 758 60 HOH HOH . O 7 HOH A 59 759 90 HOH HOH . O 7 HOH A 60 760 104 HOH HOH . O 7 HOH A 61 761 86 HOH HOH . O 7 HOH A 62 762 82 HOH HOH . O 7 HOH A 63 763 105 HOH HOH . O 7 HOH A 64 764 33 HOH HOH . O 7 HOH A 65 765 28 HOH HOH . O 7 HOH A 66 766 143 HOH HOH . O 7 HOH A 67 767 100 HOH HOH . O 7 HOH A 68 768 103 HOH HOH . O 7 HOH A 69 769 209 HOH HOH . O 7 HOH A 70 770 43 HOH HOH . O 7 HOH A 71 771 26 HOH HOH . O 7 HOH A 72 772 142 HOH HOH . O 7 HOH A 73 773 140 HOH HOH . O 7 HOH A 74 774 65 HOH HOH . O 7 HOH A 75 775 70 HOH HOH . O 7 HOH A 76 776 83 HOH HOH . O 7 HOH A 77 777 53 HOH HOH . O 7 HOH A 78 778 71 HOH HOH . O 7 HOH A 79 779 21 HOH HOH . O 7 HOH A 80 780 72 HOH HOH . O 7 HOH A 81 781 25 HOH HOH . O 7 HOH A 82 782 68 HOH HOH . O 7 HOH A 83 783 134 HOH HOH . O 7 HOH A 84 784 59 HOH HOH . O 7 HOH A 85 785 74 HOH HOH . O 7 HOH A 86 786 190 HOH HOH . O 7 HOH A 87 787 144 HOH HOH . O 7 HOH A 88 788 187 HOH HOH . O 7 HOH A 89 789 35 HOH HOH . O 7 HOH A 90 790 51 HOH HOH . O 7 HOH A 91 791 3 HOH HOH . O 7 HOH A 92 792 2 HOH HOH . O 7 HOH A 93 793 114 HOH HOH . O 7 HOH A 94 794 22 HOH HOH . O 7 HOH A 95 795 47 HOH HOH . O 7 HOH A 96 796 44 HOH HOH . O 7 HOH A 97 797 171 HOH HOH . O 7 HOH A 98 798 154 HOH HOH . O 7 HOH A 99 799 73 HOH HOH . O 7 HOH A 100 800 9 HOH HOH . O 7 HOH A 101 801 49 HOH HOH . O 7 HOH A 102 802 159 HOH HOH . O 7 HOH A 103 803 29 HOH HOH . O 7 HOH A 104 804 148 HOH HOH . O 7 HOH A 105 805 137 HOH HOH . O 7 HOH A 106 806 75 HOH HOH . O 7 HOH A 107 807 38 HOH HOH . O 7 HOH A 108 808 77 HOH HOH . O 7 HOH A 109 809 46 HOH HOH . O 7 HOH A 110 810 166 HOH HOH . O 7 HOH A 111 811 92 HOH HOH . O 7 HOH A 112 812 58 HOH HOH . O 7 HOH A 113 813 8 HOH HOH . O 7 HOH A 114 814 45 HOH HOH . O 7 HOH A 115 815 188 HOH HOH . O 7 HOH A 116 816 80 HOH HOH . O 7 HOH A 117 817 84 HOH HOH . O 7 HOH A 118 818 174 HOH HOH . O 7 HOH A 119 819 61 HOH HOH . O 7 HOH A 120 820 162 HOH HOH . O 7 HOH A 121 821 199 HOH HOH . O 7 HOH A 122 822 23 HOH HOH . O 7 HOH A 123 823 15 HOH HOH . O 7 HOH A 124 824 131 HOH HOH . O 7 HOH A 125 825 127 HOH HOH . O 7 HOH A 126 826 107 HOH HOH . O 7 HOH A 127 827 178 HOH HOH . O 7 HOH A 128 828 89 HOH HOH . O 7 HOH A 129 829 95 HOH HOH . O 7 HOH A 130 830 27 HOH HOH . O 7 HOH A 131 831 157 HOH HOH . O 7 HOH A 132 832 64 HOH HOH . O 7 HOH A 133 833 40 HOH HOH . O 7 HOH A 134 834 81 HOH HOH . O 7 HOH A 135 835 208 HOH HOH . O 7 HOH A 136 836 125 HOH HOH . O 7 HOH A 137 837 19 HOH HOH . O 7 HOH A 138 838 183 HOH HOH . O 7 HOH A 139 839 109 HOH HOH . O 7 HOH A 140 840 36 HOH HOH . O 7 HOH A 141 841 160 HOH HOH . O 7 HOH A 142 842 85 HOH HOH . O 7 HOH A 143 843 168 HOH HOH . O 7 HOH A 144 844 181 HOH HOH . O 7 HOH A 145 845 94 HOH HOH . O 7 HOH A 146 846 204 HOH HOH . O 7 HOH A 147 847 186 HOH HOH . O 7 HOH A 148 848 212 HOH HOH . O 7 HOH A 149 849 52 HOH HOH . O 7 HOH A 150 850 128 HOH HOH . O 7 HOH A 151 851 198 HOH HOH . O 7 HOH A 152 852 108 HOH HOH . O 7 HOH A 153 853 206 HOH HOH . O 7 HOH A 154 854 50 HOH HOH . O 7 HOH A 155 855 193 HOH HOH . O 7 HOH A 156 856 170 HOH HOH . O 7 HOH A 157 857 115 HOH HOH . O 7 HOH A 158 858 173 HOH HOH . O 7 HOH A 159 859 96 HOH HOH . O 7 HOH A 160 860 205 HOH HOH . O 7 HOH A 161 861 56 HOH HOH . O 7 HOH A 162 862 165 HOH HOH . O 7 HOH A 163 863 117 HOH HOH . O 7 HOH A 164 864 101 HOH HOH . O 7 HOH A 165 865 111 HOH HOH . O 7 HOH A 166 866 124 HOH HOH . O 7 HOH A 167 867 201 HOH HOH . O 7 HOH A 168 868 54 HOH HOH . O 7 HOH A 169 869 118 HOH HOH . O 7 HOH A 170 870 76 HOH HOH . O 7 HOH A 171 871 93 HOH HOH . O 7 HOH A 172 872 158 HOH HOH . O 7 HOH A 173 873 161 HOH HOH . O 7 HOH A 174 874 112 HOH HOH . O 7 HOH A 175 875 126 HOH HOH . O 7 HOH A 176 876 123 HOH HOH . O 7 HOH A 177 877 214 HOH HOH . O 7 HOH A 178 878 164 HOH HOH . O 7 HOH A 179 879 197 HOH HOH . O 7 HOH A 180 880 39 HOH HOH . O 7 HOH A 181 881 98 HOH HOH . O 7 HOH A 182 882 102 HOH HOH . O 7 HOH A 183 883 119 HOH HOH . O 7 HOH A 184 884 169 HOH HOH . O 7 HOH A 185 885 63 HOH HOH . O 7 HOH A 186 886 175 HOH HOH . O 7 HOH A 187 887 191 HOH HOH . O 7 HOH A 188 888 135 HOH HOH . O 7 HOH A 189 889 149 HOH HOH . O 7 HOH A 190 890 156 HOH HOH . O 7 HOH A 191 891 132 HOH HOH . O 7 HOH A 192 892 202 HOH HOH . O 7 HOH A 193 893 99 HOH HOH . O 7 HOH A 194 894 207 HOH HOH . O 7 HOH A 195 895 152 HOH HOH . O 7 HOH A 196 896 153 HOH HOH . O 7 HOH A 197 897 122 HOH HOH . O 7 HOH A 198 898 113 HOH HOH . O 7 HOH A 199 899 97 HOH HOH . O 7 HOH A 200 900 67 HOH HOH . O 7 HOH A 201 901 133 HOH HOH . O 7 HOH A 202 902 163 HOH HOH . O 7 HOH A 203 903 78 HOH HOH . O 7 HOH A 204 904 130 HOH HOH . O 7 HOH A 205 905 213 HOH HOH . O 7 HOH A 206 906 196 HOH HOH . O 7 HOH A 207 907 177 HOH HOH . O 7 HOH A 208 908 176 HOH HOH . O 7 HOH A 209 909 121 HOH HOH . O 7 HOH A 210 910 185 HOH HOH . O 7 HOH A 211 911 151 HOH HOH . O 7 HOH A 212 912 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 -16.791 152.392 160.621 1 80.57 ? C1 NAG 603 A 1 HETATM 2 C C2 NAG . . . D 2 -16.856 150.928 161.093 1 85.19 ? C2 NAG 603 A 1 HETATM 3 C C3 NAG . . . D 2 -18.068 150.709 162.005 1 90.82 ? C3 NAG 603 A 1 HETATM 4 C C4 NAG . . . D 2 -18.04 151.694 163.165 1 87.88 ? C4 NAG 603 A 1 HETATM 5 C C5 NAG . . . D 2 -18.007 153.115 162.615 1 93.27 ? C5 NAG 603 A 1 HETATM 6 C C6 NAG . . . D 2 -17.917 154.17 163.695 1 94.99 ? C6 NAG 603 A 1 HETATM 7 C C7 NAG . . . D 2 -15.906 149.15 159.686 1 83.99 ? C7 NAG 603 A 1 HETATM 8 C C8 NAG . . . D 2 -16.109 148.283 158.477 1 75.21 ? C8 NAG 603 A 1 HETATM 9 N N2 NAG . . . D 2 -16.892 150.013 159.963 1 83.95 ? N2 NAG 603 A 1 HETATM 10 O O3 NAG . . . D 2 -18.083 149.372 162.496 1 82.88 ? O3 NAG 603 A 1 HETATM 11 O O4 NAG . . . D 2 -19.184 151.525 163.996 1 89.86 ? O4 NAG 603 A 1 HETATM 12 O O5 NAG . . . D 2 -16.857 153.281 161.769 1 91.15 ? O5 NAG 603 A 1 HETATM 13 O O6 NAG . . . D 2 -18.535 155.383 163.284 1 97.95 ? O6 NAG 603 A 1 HETATM 14 O O7 NAG . . . D 2 -14.894 149.074 160.379 1 88.59 ? O7 NAG 603 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #