data_6FLI # _model_server_result.job_id lNSlS247mCJwkFSV_fiNCA _model_server_result.datetime_utc '2024-11-04 22:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 6FLI # _exptl.entry_id 6FLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.21 _cell.angle_gamma 90 _cell.entry_id 6FLI _cell.length_a 222.69 _cell.length_b 112.66 _cell.length_c 144.83 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 70 n n C1 O1 BNG sing 71 n n C1 O5 BNG sing 72 n n C1 H1 BNG sing 73 n n C2 C3 BNG sing 74 n n C2 O2 BNG sing 75 n n C2 H2 BNG sing 76 n n C3 C4 BNG sing 77 n n C3 O3 BNG sing 78 n n C3 H3 BNG sing 79 n n C4 C5 BNG sing 80 n n C4 O4 BNG sing 81 n n C4 H4 BNG sing 82 n n C5 C6 BNG sing 83 n n C5 O5 BNG sing 84 n n C5 H5 BNG sing 85 n n C6 O6 BNG sing 86 n n C6 H61 BNG sing 87 n n C6 H62 BNG sing 88 n n C1' C2' BNG sing 89 n n C1' O1 BNG sing 90 n n C1' "H1'1" BNG sing 91 n n C1' "H1'2" BNG sing 92 n n C2' C3' BNG sing 93 n n C2' "H2'1" BNG sing 94 n n C2' "H2'2" BNG sing 95 n n C3' C4' BNG sing 96 n n C3' "H3'1" BNG sing 97 n n C3' "H3'2" BNG sing 98 n n C4' C5' BNG sing 99 n n C4' "H4'1" BNG sing 100 n n C4' "H4'2" BNG sing 101 n n C5' C6' BNG sing 102 n n C5' "H5'1" BNG sing 103 n n C5' "H5'2" BNG sing 104 n n C6' C7' BNG sing 105 n n C6' "H6'1" BNG sing 106 n n C6' "H6'2" BNG sing 107 n n C7' C8' BNG sing 108 n n C7' "H7'1" BNG sing 109 n n C7' "H7'2" BNG sing 110 n n C8' C9' BNG sing 111 n n C8' "H8'1" BNG sing 112 n n C8' "H8'2" BNG sing 113 n n C9' "H9'1" BNG sing 114 n n C9' "H9'2" BNG sing 115 n n C9' "H9'3" BNG sing 116 n n O2 HO2 BNG sing 117 n n O3 HO3 BNG sing 118 n n O4 HO4 BNG sing 119 n n O6 HO6 BNG sing 120 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6FLI _atom_sites.fract_transf_matrix[1][1] 0.004491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001743 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 BNG A 1 401 2 BNG BNG . G 3 DQZ A 1 402 7 DQZ XXX . H 2 BNG B 1 401 3 BNG BNG . I 3 DQZ B 1 402 6 DQZ XXX . J 2 BNG C 1 401 4 BNG BNG . K 3 DQZ C 1 402 8 DQZ XXX . L 2 BNG D 1 401 5 BNG BNG . M 3 DQZ D 1 402 9 DQZ XXX . N 2 BNG E 1 401 1 BNG BNG . O 3 DQZ E 1 402 10 DQZ XXX . P 4 HOH A 1 501 105 HOH HOH . P 4 HOH A 2 502 66 HOH HOH . P 4 HOH A 3 503 106 HOH HOH . P 4 HOH A 4 504 99 HOH HOH . P 4 HOH A 5 505 51 HOH HOH . P 4 HOH A 6 506 102 HOH HOH . P 4 HOH A 7 507 85 HOH HOH . P 4 HOH A 8 508 39 HOH HOH . P 4 HOH A 9 509 95 HOH HOH . P 4 HOH A 10 510 14 HOH HOH . P 4 HOH A 11 511 77 HOH HOH . P 4 HOH A 12 512 32 HOH HOH . P 4 HOH A 13 513 36 HOH HOH . P 4 HOH A 14 514 61 HOH HOH . Q 4 HOH B 1 501 68 HOH HOH . Q 4 HOH B 2 502 38 HOH HOH . Q 4 HOH B 3 503 46 HOH HOH . Q 4 HOH B 4 504 56 HOH HOH . Q 4 HOH B 5 505 19 HOH HOH . Q 4 HOH B 6 506 71 HOH HOH . Q 4 HOH B 7 507 60 HOH HOH . Q 4 HOH B 8 508 94 HOH HOH . Q 4 HOH B 9 509 25 HOH HOH . Q 4 HOH B 10 510 5 HOH HOH . Q 4 HOH B 11 511 17 HOH HOH . Q 4 HOH B 12 512 65 HOH HOH . Q 4 HOH B 13 513 16 HOH HOH . Q 4 HOH B 14 514 86 HOH HOH . Q 4 HOH B 15 515 53 HOH HOH . Q 4 HOH B 16 516 26 HOH HOH . Q 4 HOH B 17 517 45 HOH HOH . Q 4 HOH B 18 518 59 HOH HOH . Q 4 HOH B 19 519 67 HOH HOH . R 4 HOH C 1 501 74 HOH HOH . R 4 HOH C 2 502 73 HOH HOH . R 4 HOH C 3 503 103 HOH HOH . R 4 HOH C 4 504 104 HOH HOH . R 4 HOH C 5 505 52 HOH HOH . R 4 HOH C 6 506 55 HOH HOH . R 4 HOH C 7 507 7 HOH HOH . R 4 HOH C 8 508 2 HOH HOH . R 4 HOH C 9 509 98 HOH HOH . R 4 HOH C 10 510 18 HOH HOH . R 4 HOH C 11 511 89 HOH HOH . R 4 HOH C 12 512 100 HOH HOH . R 4 HOH C 13 513 1 HOH HOH . R 4 HOH C 14 514 80 HOH HOH . R 4 HOH C 15 515 69 HOH HOH . R 4 HOH C 16 516 9 HOH HOH . R 4 HOH C 17 517 47 HOH HOH . R 4 HOH C 18 518 10 HOH HOH . R 4 HOH C 19 519 48 HOH HOH . R 4 HOH C 20 520 6 HOH HOH . R 4 HOH C 21 521 42 HOH HOH . R 4 HOH C 22 522 30 HOH HOH . R 4 HOH C 23 523 22 HOH HOH . R 4 HOH C 24 524 75 HOH HOH . R 4 HOH C 25 525 41 HOH HOH . R 4 HOH C 26 526 29 HOH HOH . R 4 HOH C 27 527 83 HOH HOH . R 4 HOH C 28 528 63 HOH HOH . R 4 HOH C 29 529 35 HOH HOH . R 4 HOH C 30 530 78 HOH HOH . S 4 HOH D 1 501 90 HOH HOH . S 4 HOH D 2 502 57 HOH HOH . S 4 HOH D 3 503 3 HOH HOH . S 4 HOH D 4 504 107 HOH HOH . S 4 HOH D 5 505 62 HOH HOH . S 4 HOH D 6 506 4 HOH HOH . S 4 HOH D 7 507 72 HOH HOH . S 4 HOH D 8 508 96 HOH HOH . S 4 HOH D 9 509 8 HOH HOH . S 4 HOH D 10 510 93 HOH HOH . S 4 HOH D 11 511 13 HOH HOH . S 4 HOH D 12 512 87 HOH HOH . S 4 HOH D 13 513 50 HOH HOH . S 4 HOH D 14 514 79 HOH HOH . S 4 HOH D 15 515 91 HOH HOH . S 4 HOH D 16 516 33 HOH HOH . S 4 HOH D 17 517 70 HOH HOH . S 4 HOH D 18 518 43 HOH HOH . S 4 HOH D 19 519 92 HOH HOH . S 4 HOH D 20 520 34 HOH HOH . S 4 HOH D 21 521 81 HOH HOH . S 4 HOH D 22 522 28 HOH HOH . S 4 HOH D 23 523 44 HOH HOH . S 4 HOH D 24 524 40 HOH HOH . S 4 HOH D 25 525 37 HOH HOH . S 4 HOH D 26 526 76 HOH HOH . S 4 HOH D 27 527 49 HOH HOH . S 4 HOH D 28 528 11 HOH HOH . S 4 HOH D 29 529 84 HOH HOH . S 4 HOH D 30 530 54 HOH HOH . T 4 HOH E 1 501 101 HOH HOH . T 4 HOH E 2 502 64 HOH HOH . T 4 HOH E 3 503 12 HOH HOH . T 4 HOH E 4 504 24 HOH HOH . T 4 HOH E 5 505 20 HOH HOH . T 4 HOH E 6 506 58 HOH HOH . T 4 HOH E 7 507 88 HOH HOH . T 4 HOH E 8 508 21 HOH HOH . T 4 HOH E 9 509 97 HOH HOH . T 4 HOH E 10 510 23 HOH HOH . T 4 HOH E 11 511 15 HOH HOH . T 4 HOH E 12 512 27 HOH HOH . T 4 HOH E 13 513 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . J 2 -18.15 -7.842 16.705 1 76.31 ? C1 BNG 401 C 1 HETATM 2 C C2 BNG . . . J 2 -17.297 -6.699 16.14 1 79.44 ? C2 BNG 401 C 1 HETATM 3 C C3 BNG . . . J 2 -16.731 -5.842 17.274 1 81.57 ? C3 BNG 401 C 1 HETATM 4 C C4 BNG . . . J 2 -17.837 -5.405 18.225 1 79.33 ? C4 BNG 401 C 1 HETATM 5 C C5 BNG . . . J 2 -18.563 -6.648 18.744 1 76.44 ? C5 BNG 401 C 1 HETATM 6 C C6 BNG . . . J 2 -19.681 -6.39 19.74 1 74.67 ? C6 BNG 401 C 1 HETATM 7 C C1' BNG . . . J 2 -18.326 -9.948 15.589 1 66.62 ? C1' BNG 401 C 1 HETATM 8 C C2' BNG . . . J 2 -16.949 -10.206 14.968 1 59.99 ? C2' BNG 401 C 1 HETATM 9 C C3' BNG . . . J 2 -16.55 -11.662 14.723 1 51.63 ? C3' BNG 401 C 1 HETATM 10 C C4' BNG . . . J 2 -16.052 -12.51 15.892 1 45.68 ? C4' BNG 401 C 1 HETATM 11 C C5' BNG . . . J 2 -17.104 -13.247 16.716 1 41.94 ? C5' BNG 401 C 1 HETATM 12 C C6' BNG . . . J 2 -17.465 -12.59 18.048 1 38.39 ? C6' BNG 401 C 1 HETATM 13 C C7' BNG . . . J 2 -18.949 -12.476 18.365 1 33.07 ? C7' BNG 401 C 1 HETATM 14 C C8' BNG . . . J 2 -19.295 -11.699 19.622 1 28.84 ? C8' BNG 401 C 1 HETATM 15 C C9' BNG . . . J 2 -19.446 -10.215 19.404 1 26.92 ? C9' BNG 401 C 1 HETATM 16 O O1 BNG . . . J 2 -18.707 -8.564 15.63 1 71.29 ? O1 BNG 401 C 1 HETATM 17 O O2 BNG . . . J 2 -16.226 -7.202 15.341 1 77.39 ? O2 BNG 401 C 1 HETATM 18 O O3 BNG . . . J 2 -16.058 -4.692 16.773 1 85.03 ? O3 BNG 401 C 1 HETATM 19 O O4 BNG . . . J 2 -17.261 -4.61 19.254 1 79.75 ? O4 BNG 401 C 1 HETATM 20 O O5 BNG . . . J 2 -19.128 -7.365 17.626 1 75.9 ? O5 BNG 401 C 1 HETATM 21 O O6 BNG . . . J 2 -20.474 -5.246 19.437 1 73.66 ? O6 BNG 401 C 1 # _model_server_stats.io_time_ms 138 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #