data_6FLR # _model_server_result.job_id gmi5QxFQ5I8A5iRW08lc8g _model_server_result.datetime_utc '2024-12-05 01:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6flr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6FLR # _exptl.entry_id 6FLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6FLR _cell.length_a 56.196 _cell.length_b 105.145 _cell.length_c 134.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 63 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 63 B CYS 63 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 B ND2 ASN 352 B ASN 352 1_555 F C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6FLR _atom_sites.fract_transf_matrix[1][1] 0.017795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 1 NAG NAG . D 2 NAG A 1 402 2 NAG NAG . E 2 NAG A 1 403 4 NAG NAG . F 2 NAG B 1 401 3 NAG NAG . G 2 NAG B 1 402 5 NAG NAG . H 3 HOH A 1 501 40 HOH HOH . H 3 HOH A 2 502 2 HOH HOH . H 3 HOH A 3 503 12 HOH HOH . H 3 HOH A 4 504 43 HOH HOH . H 3 HOH A 5 505 31 HOH HOH . H 3 HOH A 6 506 7 HOH HOH . H 3 HOH A 7 507 27 HOH HOH . H 3 HOH A 8 508 25 HOH HOH . H 3 HOH A 9 509 26 HOH HOH . H 3 HOH A 10 510 46 HOH HOH . H 3 HOH A 11 511 47 HOH HOH . H 3 HOH A 12 512 33 HOH HOH . H 3 HOH A 13 513 18 HOH HOH . H 3 HOH A 14 514 1 HOH HOH . H 3 HOH A 15 515 10 HOH HOH . H 3 HOH A 16 516 30 HOH HOH . H 3 HOH A 17 517 19 HOH HOH . H 3 HOH A 18 518 24 HOH HOH . H 3 HOH A 19 519 6 HOH HOH . H 3 HOH A 20 520 36 HOH HOH . H 3 HOH A 21 521 3 HOH HOH . H 3 HOH A 22 522 8 HOH HOH . H 3 HOH A 23 523 41 HOH HOH . H 3 HOH A 24 524 4 HOH HOH . H 3 HOH A 25 525 34 HOH HOH . H 3 HOH A 26 526 35 HOH HOH . H 3 HOH A 27 527 5 HOH HOH . H 3 HOH A 28 528 44 HOH HOH . H 3 HOH A 29 529 38 HOH HOH . H 3 HOH A 30 530 39 HOH HOH . H 3 HOH A 31 531 37 HOH HOH . I 3 HOH B 1 501 11 HOH HOH . I 3 HOH B 2 502 9 HOH HOH . I 3 HOH B 3 503 32 HOH HOH . I 3 HOH B 4 504 42 HOH HOH . I 3 HOH B 5 505 17 HOH HOH . I 3 HOH B 6 506 16 HOH HOH . I 3 HOH B 7 507 45 HOH HOH . I 3 HOH B 8 508 22 HOH HOH . I 3 HOH B 9 509 23 HOH HOH . I 3 HOH B 10 510 13 HOH HOH . I 3 HOH B 11 511 15 HOH HOH . I 3 HOH B 12 512 14 HOH HOH . I 3 HOH B 13 513 21 HOH HOH . I 3 HOH B 14 514 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 -5.305 28.524 32.646 1 101.51 ? C1 NAG 402 A 1 HETATM 2 C C2 NAG . . . D 2 -5.301 29.895 33.304 1 104.23 ? C2 NAG 402 A 1 HETATM 3 C C3 NAG . . . D 2 -6.019 30.849 32.349 1 103.14 ? C3 NAG 402 A 1 HETATM 4 C C4 NAG . . . D 2 -5.321 30.826 30.983 1 104.62 ? C4 NAG 402 A 1 HETATM 5 C C5 NAG . . . D 2 -5.068 29.408 30.463 1 103.56 ? C5 NAG 402 A 1 HETATM 6 C C6 NAG . . . D 2 -4.154 29.428 29.238 1 103.05 ? C6 NAG 402 A 1 HETATM 7 C C7 NAG . . . D 2 -5.239 29.879 35.808 1 106.61 ? C7 NAG 402 A 1 HETATM 8 C C8 NAG . . . D 2 -3.808 30.335 35.833 1 102.26 ? C8 NAG 402 A 1 HETATM 9 N N2 NAG . . . D 2 -5.891 29.753 34.634 1 107.95 ? N2 NAG 402 A 1 HETATM 10 O O3 NAG . . . D 2 -6.011 32.185 32.861 1 99.63 ? O3 NAG 402 A 1 HETATM 11 O O4 NAG . . . D 2 -6.113 31.529 30.021 1 107.8 ? O4 NAG 402 A 1 HETATM 12 O O5 NAG . . . D 2 -4.482 28.597 31.484 1 99.85 ? O5 NAG 402 A 1 HETATM 13 O O6 NAG . . . D 2 -3.764 28.096 28.873 1 99.29 ? O6 NAG 402 A 1 HETATM 14 O O7 NAG . . . D 2 -5.791 29.611 36.865 1 111.58 ? O7 NAG 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #