data_6FLV # _model_server_result.job_id 2rzv_Vzv-lYowbYgjEkHeg _model_server_result.datetime_utc '2024-12-26 13:33:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6flv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6FLV # _exptl.entry_id 6FLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.77 _cell.angle_gamma 90 _cell.entry_id 6FLV _cell.length_a 48.636 _cell.length_b 69.599 _cell.length_c 59.696 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 164 A THR 158 1_555 A N CME 165 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 165 A CME 159 1_555 A N ASP 166 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6FLV _atom_sites.fract_transf_matrix[1][1] 0.020561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006987 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 DTW A 1 403 1 DTW DRG . E 4 DMS A 1 404 1 DMS DMS . F 4 DMS A 1 405 2 DMS DMS . G 4 DMS A 1 406 13 DMS DMS . H 4 DMS A 1 407 14 DMS DMS . I 5 HOH A 1 501 50 HOH HOH . I 5 HOH A 2 502 92 HOH HOH . I 5 HOH A 3 503 217 HOH HOH . I 5 HOH A 4 504 172 HOH HOH . I 5 HOH A 5 505 1 HOH HOH . I 5 HOH A 6 506 75 HOH HOH . I 5 HOH A 7 507 26 HOH HOH . I 5 HOH A 8 508 150 HOH HOH . I 5 HOH A 9 509 112 HOH HOH . I 5 HOH A 10 510 87 HOH HOH . I 5 HOH A 11 511 116 HOH HOH . I 5 HOH A 12 512 149 HOH HOH . I 5 HOH A 13 513 54 HOH HOH . I 5 HOH A 14 514 238 HOH HOH . I 5 HOH A 15 515 235 HOH HOH . I 5 HOH A 16 516 134 HOH HOH . I 5 HOH A 17 517 52 HOH HOH . I 5 HOH A 18 518 18 HOH HOH . I 5 HOH A 19 519 165 HOH HOH . I 5 HOH A 20 520 140 HOH HOH . I 5 HOH A 21 521 192 HOH HOH . I 5 HOH A 22 522 73 HOH HOH . I 5 HOH A 23 523 125 HOH HOH . I 5 HOH A 24 524 122 HOH HOH . I 5 HOH A 25 525 208 HOH HOH . I 5 HOH A 26 526 17 HOH HOH . I 5 HOH A 27 527 55 HOH HOH . I 5 HOH A 28 528 180 HOH HOH . I 5 HOH A 29 529 3 HOH HOH . I 5 HOH A 30 530 93 HOH HOH . I 5 HOH A 31 531 31 HOH HOH . I 5 HOH A 32 532 38 HOH HOH . I 5 HOH A 33 533 126 HOH HOH . I 5 HOH A 34 534 105 HOH HOH . I 5 HOH A 35 535 196 HOH HOH . I 5 HOH A 36 536 21 HOH HOH . I 5 HOH A 37 537 110 HOH HOH . I 5 HOH A 38 538 137 HOH HOH . I 5 HOH A 39 539 2 HOH HOH . I 5 HOH A 40 540 108 HOH HOH . I 5 HOH A 41 541 133 HOH HOH . I 5 HOH A 42 542 91 HOH HOH . I 5 HOH A 43 543 9 HOH HOH . I 5 HOH A 44 544 131 HOH HOH . I 5 HOH A 45 545 6 HOH HOH . I 5 HOH A 46 546 13 HOH HOH . I 5 HOH A 47 547 7 HOH HOH . I 5 HOH A 48 548 89 HOH HOH . I 5 HOH A 49 549 24 HOH HOH . I 5 HOH A 50 550 94 HOH HOH . I 5 HOH A 51 551 139 HOH HOH . I 5 HOH A 52 552 72 HOH HOH . I 5 HOH A 53 553 51 HOH HOH . I 5 HOH A 54 554 174 HOH HOH . I 5 HOH A 55 555 32 HOH HOH . I 5 HOH A 56 556 63 HOH HOH . I 5 HOH A 57 557 10 HOH HOH . I 5 HOH A 58 558 106 HOH HOH . I 5 HOH A 59 559 257 HOH HOH . I 5 HOH A 60 560 247 HOH HOH . I 5 HOH A 61 561 256 HOH HOH . I 5 HOH A 62 562 15 HOH HOH . I 5 HOH A 63 563 95 HOH HOH . I 5 HOH A 64 564 138 HOH HOH . I 5 HOH A 65 565 104 HOH HOH . I 5 HOH A 66 566 151 HOH HOH . I 5 HOH A 67 567 132 HOH HOH . I 5 HOH A 68 568 39 HOH HOH . I 5 HOH A 69 569 86 HOH HOH . I 5 HOH A 70 570 88 HOH HOH . I 5 HOH A 71 571 4 HOH HOH . I 5 HOH A 72 572 27 HOH HOH . I 5 HOH A 73 573 82 HOH HOH . I 5 HOH A 74 574 195 HOH HOH . I 5 HOH A 75 575 35 HOH HOH . I 5 HOH A 76 576 231 HOH HOH . I 5 HOH A 77 577 79 HOH HOH . I 5 HOH A 78 578 29 HOH HOH . I 5 HOH A 79 579 123 HOH HOH . I 5 HOH A 80 580 98 HOH HOH . I 5 HOH A 81 581 96 HOH HOH . I 5 HOH A 82 582 78 HOH HOH . I 5 HOH A 83 583 103 HOH HOH . I 5 HOH A 84 584 197 HOH HOH . I 5 HOH A 85 585 23 HOH HOH . I 5 HOH A 86 586 212 HOH HOH . I 5 HOH A 87 587 173 HOH HOH . I 5 HOH A 88 588 84 HOH HOH . I 5 HOH A 89 589 14 HOH HOH . I 5 HOH A 90 590 40 HOH HOH . I 5 HOH A 91 591 130 HOH HOH . I 5 HOH A 92 592 25 HOH HOH . I 5 HOH A 93 593 41 HOH HOH . I 5 HOH A 94 594 121 HOH HOH . I 5 HOH A 95 595 28 HOH HOH . I 5 HOH A 96 596 5 HOH HOH . I 5 HOH A 97 597 20 HOH HOH . I 5 HOH A 98 598 47 HOH HOH . I 5 HOH A 99 599 42 HOH HOH . I 5 HOH A 100 600 33 HOH HOH . I 5 HOH A 101 601 175 HOH HOH . I 5 HOH A 102 602 198 HOH HOH . I 5 HOH A 103 603 145 HOH HOH . I 5 HOH A 104 604 74 HOH HOH . I 5 HOH A 105 605 85 HOH HOH . I 5 HOH A 106 606 135 HOH HOH . I 5 HOH A 107 607 59 HOH HOH . I 5 HOH A 108 608 22 HOH HOH . I 5 HOH A 109 609 101 HOH HOH . I 5 HOH A 110 610 37 HOH HOH . I 5 HOH A 111 611 220 HOH HOH . I 5 HOH A 112 612 34 HOH HOH . I 5 HOH A 113 613 90 HOH HOH . I 5 HOH A 114 614 97 HOH HOH . I 5 HOH A 115 615 44 HOH HOH . I 5 HOH A 116 616 199 HOH HOH . I 5 HOH A 117 617 12 HOH HOH . I 5 HOH A 118 618 8 HOH HOH . I 5 HOH A 119 619 187 HOH HOH . I 5 HOH A 120 620 185 HOH HOH . I 5 HOH A 121 621 250 HOH HOH . I 5 HOH A 122 622 203 HOH HOH . I 5 HOH A 123 623 60 HOH HOH . I 5 HOH A 124 624 117 HOH HOH . I 5 HOH A 125 625 16 HOH HOH . I 5 HOH A 126 626 136 HOH HOH . I 5 HOH A 127 627 114 HOH HOH . I 5 HOH A 128 628 57 HOH HOH . I 5 HOH A 129 629 36 HOH HOH . I 5 HOH A 130 630 49 HOH HOH . I 5 HOH A 131 631 144 HOH HOH . I 5 HOH A 132 632 205 HOH HOH . I 5 HOH A 133 633 111 HOH HOH . I 5 HOH A 134 634 234 HOH HOH . I 5 HOH A 135 635 45 HOH HOH . I 5 HOH A 136 636 254 HOH HOH . I 5 HOH A 137 637 227 HOH HOH . I 5 HOH A 138 638 129 HOH HOH . I 5 HOH A 139 639 118 HOH HOH . I 5 HOH A 140 640 156 HOH HOH . I 5 HOH A 141 641 11 HOH HOH . I 5 HOH A 142 642 102 HOH HOH . I 5 HOH A 143 643 148 HOH HOH . I 5 HOH A 144 644 170 HOH HOH . I 5 HOH A 145 645 127 HOH HOH . I 5 HOH A 146 646 255 HOH HOH . I 5 HOH A 147 647 252 HOH HOH . I 5 HOH A 148 648 193 HOH HOH . I 5 HOH A 149 649 124 HOH HOH . I 5 HOH A 150 650 222 HOH HOH . I 5 HOH A 151 651 58 HOH HOH . I 5 HOH A 152 652 181 HOH HOH . I 5 HOH A 153 653 177 HOH HOH . I 5 HOH A 154 654 100 HOH HOH . I 5 HOH A 155 655 206 HOH HOH . I 5 HOH A 156 656 201 HOH HOH . I 5 HOH A 157 657 214 HOH HOH . I 5 HOH A 158 658 241 HOH HOH . I 5 HOH A 159 659 53 HOH HOH . I 5 HOH A 160 660 188 HOH HOH . I 5 HOH A 161 661 229 HOH HOH . I 5 HOH A 162 662 64 HOH HOH . I 5 HOH A 163 663 61 HOH HOH . I 5 HOH A 164 664 248 HOH HOH . I 5 HOH A 165 665 155 HOH HOH . I 5 HOH A 166 666 259 HOH HOH . I 5 HOH A 167 667 200 HOH HOH . I 5 HOH A 168 668 66 HOH HOH . I 5 HOH A 169 669 189 HOH HOH . I 5 HOH A 170 670 211 HOH HOH . I 5 HOH A 171 671 244 HOH HOH . I 5 HOH A 172 672 162 HOH HOH . I 5 HOH A 173 673 190 HOH HOH . I 5 HOH A 174 674 258 HOH HOH . I 5 HOH A 175 675 216 HOH HOH . I 5 HOH A 176 676 204 HOH HOH . I 5 HOH A 177 677 119 HOH HOH . I 5 HOH A 178 678 159 HOH HOH . I 5 HOH A 179 679 186 HOH HOH . I 5 HOH A 180 680 68 HOH HOH . I 5 HOH A 181 681 183 HOH HOH . I 5 HOH A 182 682 240 HOH HOH . I 5 HOH A 183 683 152 HOH HOH . I 5 HOH A 184 684 109 HOH HOH . I 5 HOH A 185 685 224 HOH HOH . I 5 HOH A 186 686 99 HOH HOH . I 5 HOH A 187 687 230 HOH HOH . I 5 HOH A 188 688 207 HOH HOH . I 5 HOH A 189 689 70 HOH HOH . I 5 HOH A 190 690 154 HOH HOH . I 5 HOH A 191 691 245 HOH HOH . I 5 HOH A 192 692 107 HOH HOH . I 5 HOH A 193 693 219 HOH HOH . I 5 HOH A 194 694 158 HOH HOH . I 5 HOH A 195 695 67 HOH HOH . I 5 HOH A 196 696 253 HOH HOH . I 5 HOH A 197 697 171 HOH HOH . I 5 HOH A 198 698 191 HOH HOH . I 5 HOH A 199 699 236 HOH HOH . I 5 HOH A 200 700 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 0.44 -6.375 49.34 0.8 25.38 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 4 1.17 -5.102 49.617 0.8 25.15 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 4 0.88 -7.576 50.629 0.8 25.13 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 4 -1.307 -6.121 49.769 0.8 26.39 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #