data_6FM0 # _model_server_result.job_id RI-oS6z39RAzJvG-3J9dAQ _model_server_result.datetime_utc '2024-11-14 08:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6FM0 # _exptl.entry_id 6FM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.76 _cell.angle_gamma 90 _cell.entry_id 6FM0 _cell.length_a 158.86 _cell.length_b 60.41 _cell.length_c 91.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6FM0 _atom_sites.fract_transf_matrix[1][1] 0.006295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002903 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 401 1 ATP ATP . D 2 ATP B 1 401 2 ATP ATP . E 3 HOH A 1 501 85 HOH HOH . E 3 HOH A 2 502 59 HOH HOH . E 3 HOH A 3 503 134 HOH HOH . E 3 HOH A 4 504 129 HOH HOH . E 3 HOH A 5 505 100 HOH HOH . E 3 HOH A 6 506 31 HOH HOH . E 3 HOH A 7 507 92 HOH HOH . E 3 HOH A 8 508 110 HOH HOH . E 3 HOH A 9 509 9 HOH HOH . E 3 HOH A 10 510 109 HOH HOH . E 3 HOH A 11 511 15 HOH HOH . E 3 HOH A 12 512 128 HOH HOH . E 3 HOH A 13 513 119 HOH HOH . E 3 HOH A 14 514 39 HOH HOH . E 3 HOH A 15 515 81 HOH HOH . E 3 HOH A 16 516 2 HOH HOH . E 3 HOH A 17 517 87 HOH HOH . E 3 HOH A 18 518 16 HOH HOH . E 3 HOH A 19 519 38 HOH HOH . E 3 HOH A 20 520 79 HOH HOH . E 3 HOH A 21 521 127 HOH HOH . E 3 HOH A 22 522 102 HOH HOH . E 3 HOH A 23 523 133 HOH HOH . E 3 HOH A 24 524 17 HOH HOH . E 3 HOH A 25 525 23 HOH HOH . E 3 HOH A 26 526 20 HOH HOH . E 3 HOH A 27 527 35 HOH HOH . E 3 HOH A 28 528 40 HOH HOH . E 3 HOH A 29 529 11 HOH HOH . E 3 HOH A 30 530 75 HOH HOH . E 3 HOH A 31 531 21 HOH HOH . E 3 HOH A 32 532 126 HOH HOH . E 3 HOH A 33 533 130 HOH HOH . E 3 HOH A 34 534 69 HOH HOH . E 3 HOH A 35 535 89 HOH HOH . E 3 HOH A 36 536 4 HOH HOH . E 3 HOH A 37 537 27 HOH HOH . E 3 HOH A 38 538 98 HOH HOH . E 3 HOH A 39 539 19 HOH HOH . E 3 HOH A 40 540 36 HOH HOH . E 3 HOH A 41 541 42 HOH HOH . E 3 HOH A 42 542 121 HOH HOH . E 3 HOH A 43 543 136 HOH HOH . E 3 HOH A 44 544 57 HOH HOH . E 3 HOH A 45 545 77 HOH HOH . E 3 HOH A 46 546 3 HOH HOH . E 3 HOH A 47 547 18 HOH HOH . E 3 HOH A 48 548 37 HOH HOH . E 3 HOH A 49 549 51 HOH HOH . E 3 HOH A 50 550 32 HOH HOH . E 3 HOH A 51 551 65 HOH HOH . E 3 HOH A 52 552 7 HOH HOH . E 3 HOH A 53 553 123 HOH HOH . E 3 HOH A 54 554 103 HOH HOH . E 3 HOH A 55 555 117 HOH HOH . E 3 HOH A 56 556 91 HOH HOH . E 3 HOH A 57 557 47 HOH HOH . E 3 HOH A 58 558 137 HOH HOH . E 3 HOH A 59 559 122 HOH HOH . E 3 HOH A 60 560 48 HOH HOH . E 3 HOH A 61 561 124 HOH HOH . E 3 HOH A 62 562 80 HOH HOH . E 3 HOH A 63 563 88 HOH HOH . E 3 HOH A 64 564 132 HOH HOH . E 3 HOH A 65 565 131 HOH HOH . E 3 HOH A 66 566 115 HOH HOH . E 3 HOH A 67 567 125 HOH HOH . F 3 HOH B 1 501 58 HOH HOH . F 3 HOH B 2 502 8 HOH HOH . F 3 HOH B 3 503 41 HOH HOH . F 3 HOH B 4 504 50 HOH HOH . F 3 HOH B 5 505 61 HOH HOH . F 3 HOH B 6 506 56 HOH HOH . F 3 HOH B 7 507 68 HOH HOH . F 3 HOH B 8 508 64 HOH HOH . F 3 HOH B 9 509 52 HOH HOH . F 3 HOH B 10 510 66 HOH HOH . F 3 HOH B 11 511 83 HOH HOH . F 3 HOH B 12 512 29 HOH HOH . F 3 HOH B 13 513 143 HOH HOH . F 3 HOH B 14 514 5 HOH HOH . F 3 HOH B 15 515 95 HOH HOH . F 3 HOH B 16 516 97 HOH HOH . F 3 HOH B 17 517 153 HOH HOH . F 3 HOH B 18 518 106 HOH HOH . F 3 HOH B 19 519 24 HOH HOH . F 3 HOH B 20 520 86 HOH HOH . F 3 HOH B 21 521 14 HOH HOH . F 3 HOH B 22 522 55 HOH HOH . F 3 HOH B 23 523 60 HOH HOH . F 3 HOH B 24 524 6 HOH HOH . F 3 HOH B 25 525 144 HOH HOH . F 3 HOH B 26 526 96 HOH HOH . F 3 HOH B 27 527 10 HOH HOH . F 3 HOH B 28 528 114 HOH HOH . F 3 HOH B 29 529 46 HOH HOH . F 3 HOH B 30 530 54 HOH HOH . F 3 HOH B 31 531 1 HOH HOH . F 3 HOH B 32 532 33 HOH HOH . F 3 HOH B 33 533 82 HOH HOH . F 3 HOH B 34 534 72 HOH HOH . F 3 HOH B 35 535 12 HOH HOH . F 3 HOH B 36 536 62 HOH HOH . F 3 HOH B 37 537 22 HOH HOH . F 3 HOH B 38 538 145 HOH HOH . F 3 HOH B 39 539 78 HOH HOH . F 3 HOH B 40 540 13 HOH HOH . F 3 HOH B 41 541 73 HOH HOH . F 3 HOH B 42 542 142 HOH HOH . F 3 HOH B 43 543 63 HOH HOH . F 3 HOH B 44 544 105 HOH HOH . F 3 HOH B 45 545 43 HOH HOH . F 3 HOH B 46 546 30 HOH HOH . F 3 HOH B 47 547 120 HOH HOH . F 3 HOH B 48 548 44 HOH HOH . F 3 HOH B 49 549 28 HOH HOH . F 3 HOH B 50 550 34 HOH HOH . F 3 HOH B 51 551 150 HOH HOH . F 3 HOH B 52 552 71 HOH HOH . F 3 HOH B 53 553 90 HOH HOH . F 3 HOH B 54 554 25 HOH HOH . F 3 HOH B 55 555 67 HOH HOH . F 3 HOH B 56 556 139 HOH HOH . F 3 HOH B 57 557 151 HOH HOH . F 3 HOH B 58 558 94 HOH HOH . F 3 HOH B 59 559 157 HOH HOH . F 3 HOH B 60 560 107 HOH HOH . F 3 HOH B 61 561 154 HOH HOH . F 3 HOH B 62 562 49 HOH HOH . F 3 HOH B 63 563 140 HOH HOH . F 3 HOH B 64 564 138 HOH HOH . F 3 HOH B 65 565 159 HOH HOH . F 3 HOH B 66 566 141 HOH HOH . F 3 HOH B 67 567 26 HOH HOH . F 3 HOH B 68 568 160 HOH HOH . F 3 HOH B 69 569 146 HOH HOH . F 3 HOH B 70 570 158 HOH HOH . F 3 HOH B 71 571 108 HOH HOH . F 3 HOH B 72 572 74 HOH HOH . F 3 HOH B 73 573 76 HOH HOH . F 3 HOH B 74 574 45 HOH HOH . F 3 HOH B 75 575 148 HOH HOH . F 3 HOH B 76 576 156 HOH HOH . F 3 HOH B 77 577 147 HOH HOH . F 3 HOH B 78 578 113 HOH HOH . F 3 HOH B 79 579 70 HOH HOH . F 3 HOH B 80 580 118 HOH HOH . F 3 HOH B 81 581 112 HOH HOH . F 3 HOH B 82 582 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 43.936 28.788 33.464 1 110.35 ? PG ATP 401 B 1 HETATM 2 O O1G ATP . . . D 2 44.799 29.346 32.322 1 110.67 ? O1G ATP 401 B 1 HETATM 3 O O2G ATP . . . D 2 44.686 27.846 34.377 1 113.39 ? O2G ATP 401 B 1 HETATM 4 O O3G ATP . . . D 2 43.276 29.956 34.215 1 112.7 ? O3G ATP 401 B 1 HETATM 5 P PB ATP . . . D 2 41.525 27.204 33.427 1 81.11 ? PB ATP 401 B 1 HETATM 6 O O1B ATP . . . D 2 41.485 25.788 33.015 1 72.91 ? O1B ATP 401 B 1 HETATM 7 O O2B ATP . . . D 2 41.596 27.389 34.941 1 82.25 ? O2B ATP 401 B 1 HETATM 8 O O3B ATP . . . D 2 42.726 28.017 32.774 1 98.59 ? O3B ATP 401 B 1 HETATM 9 P PA ATP . . . D 2 38.842 27.296 32.686 1 89.59 ? PA ATP 401 B 1 HETATM 10 O O1A ATP . . . D 2 39.007 26.498 31.394 1 93.55 ? O1A ATP 401 B 1 HETATM 11 O O2A ATP . . . D 2 38.468 26.48 33.866 1 83.27 ? O2A ATP 401 B 1 HETATM 12 O O3A ATP . . . D 2 40.245 28.001 32.925 1 83.24 ? O3A ATP 401 B 1 HETATM 13 O O5' ATP . . . D 2 37.75 28.435 32.341 1 94.6 ? O5' ATP 401 B 1 HETATM 14 C C5' ATP . . . D 2 36.334 28.188 32.477 1 97.2 ? C5' ATP 401 B 1 HETATM 15 C C4' ATP . . . D 2 35.692 28.002 31.125 1 102.47 ? C4' ATP 401 B 1 HETATM 16 O O4' ATP . . . D 2 36.104 26.747 30.559 1 106.25 ? O4' ATP 401 B 1 HETATM 17 C C3' ATP . . . D 2 34.171 27.939 31.161 1 111.17 ? C3' ATP 401 B 1 HETATM 18 O O3' ATP . . . D 2 33.63 29.241 30.968 1 116.71 ? O3' ATP 401 B 1 HETATM 19 C C2' ATP . . . D 2 33.805 26.982 30.008 1 113.25 ? C2' ATP 401 B 1 HETATM 20 O O2' ATP . . . D 2 33.208 27.657 28.904 1 114.92 ? O2' ATP 401 B 1 HETATM 21 C C1' ATP . . . D 2 35.146 26.359 29.594 1 110.72 ? C1' ATP 401 B 1 HETATM 22 N N9 ATP . . . D 2 35.142 24.905 29.527 1 116.38 ? N9 ATP 401 B 1 HETATM 23 C C8 ATP . . . D 2 35.76 24.05 30.399 1 120.72 ? C8 ATP 401 B 1 HETATM 24 N N7 ATP . . . D 2 35.695 22.783 30.063 1 122.97 ? N7 ATP 401 B 1 HETATM 25 C C5 ATP . . . D 2 34.971 22.809 28.875 1 122.61 ? C5 ATP 401 B 1 HETATM 26 C C6 ATP . . . D 2 34.589 21.785 27.981 1 124.38 ? C6 ATP 401 B 1 HETATM 27 N N6 ATP . . . D 2 34.879 20.492 28.156 1 126.91 ? N6 ATP 401 B 1 HETATM 28 N N1 ATP . . . D 2 33.887 22.146 26.884 1 121.84 ? N1 ATP 401 B 1 HETATM 29 C C2 ATP . . . D 2 33.591 23.436 26.704 1 121.92 ? C2 ATP 401 B 1 HETATM 30 N N3 ATP . . . D 2 33.906 24.483 27.473 1 122.53 ? N3 ATP 401 B 1 HETATM 31 C C4 ATP . . . D 2 34.61 24.097 28.543 1 120.63 ? C4 ATP 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #