data_6FM2
#
_model_server_result.job_id            OvrvELCcMMUlrTOP30kWrQ 
_model_server_result.datetime_utc      '2024-10-20 00:38:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6fm2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6FM2 
#
_exptl.entry_id    6FM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6FM2 
_cell.length_a            73.833 
_cell.length_b            73.833 
_cell.length_c            453.377 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6FM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -36.9165 63.941254 75.562833 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
metalc ? metalc1 C MG MG . A MG 401 1_555 D O2B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc2 C MG MG . A MG 401 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc3 C MG MG . A MG 401 1_555 E O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc4 C MG MG . A MG 401 1_555 E O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc5 C MG MG . A MG 401 1_555 E O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6FM2 
_atom_sites.fract_transf_matrix[1][1]    0.013544 
_atom_sites.fract_transf_matrix[1][2]    0.00782 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 401 1 MG MG . 
D 4 ADP A 1 402 1380 ADP ADP . 
E 5 HOH A 1 501 53 HOH HOH . 
E 5 HOH A 2 502 51 HOH HOH . 
E 5 HOH A 3 503 70 HOH HOH . 
E 5 HOH A 4 504 20 HOH HOH . 
E 5 HOH A 5 505 71 HOH HOH . 
E 5 HOH A 6 506 40 HOH HOH . 
E 5 HOH A 7 507 48 HOH HOH . 
E 5 HOH A 8 508 79 HOH HOH . 
E 5 HOH A 9 509 56 HOH HOH . 
E 5 HOH A 10 510 11 HOH HOH . 
E 5 HOH A 11 511 47 HOH HOH . 
E 5 HOH A 12 512 50 HOH HOH . 
E 5 HOH A 13 513 59 HOH HOH . 
E 5 HOH A 14 514 75 HOH HOH . 
E 5 HOH A 15 515 7 HOH HOH . 
E 5 HOH A 16 516 73 HOH HOH . 
E 5 HOH A 17 517 33 HOH HOH . 
E 5 HOH A 18 518 78 HOH HOH . 
E 5 HOH A 19 519 77 HOH HOH . 
E 5 HOH A 20 520 74 HOH HOH . 
E 5 HOH A 21 521 69 HOH HOH . 
E 5 HOH A 22 522 34 HOH HOH . 
E 5 HOH A 23 523 58 HOH HOH . 
E 5 HOH A 24 524 22 HOH HOH . 
E 5 HOH A 25 525 64 HOH HOH . 
E 5 HOH A 26 526 13 HOH HOH . 
E 5 HOH A 27 527 23 HOH HOH . 
E 5 HOH A 28 528 41 HOH HOH . 
E 5 HOH A 29 529 6 HOH HOH . 
E 5 HOH A 30 530 76 HOH HOH . 
E 5 HOH A 31 531 61 HOH HOH . 
E 5 HOH A 32 532 19 HOH HOH . 
E 5 HOH A 33 533 45 HOH HOH . 
E 5 HOH A 34 534 49 HOH HOH . 
E 5 HOH A 35 535 1 HOH HOH . 
E 5 HOH A 36 536 9 HOH HOH . 
E 5 HOH A 37 537 2 HOH HOH . 
E 5 HOH A 38 538 67 HOH HOH . 
E 5 HOH A 39 539 35 HOH HOH . 
E 5 HOH A 40 540 14 HOH HOH . 
E 5 HOH A 41 541 8 HOH HOH . 
E 5 HOH A 42 542 42 HOH HOH . 
E 5 HOH A 43 543 5 HOH HOH . 
E 5 HOH A 44 544 15 HOH HOH . 
E 5 HOH A 45 545 72 HOH HOH . 
E 5 HOH A 46 546 36 HOH HOH . 
E 5 HOH A 47 547 57 HOH HOH . 
E 5 HOH A 48 548 16 HOH HOH . 
E 5 HOH A 49 549 66 HOH HOH . 
E 5 HOH A 50 550 10 HOH HOH . 
E 5 HOH A 51 551 39 HOH HOH . 
E 5 HOH A 52 552 17 HOH HOH . 
E 5 HOH A 53 553 24 HOH HOH . 
E 5 HOH A 54 554 37 HOH HOH . 
E 5 HOH A 55 555 60 HOH HOH . 
E 5 HOH A 56 556 44 HOH HOH . 
E 5 HOH A 57 557 63 HOH HOH . 
E 5 HOH A 58 558 31 HOH HOH . 
F 5 HOH B 1 501 26 HOH HOH . 
F 5 HOH B 2 502 46 HOH HOH . 
F 5 HOH B 3 503 30 HOH HOH . 
F 5 HOH B 4 504 52 HOH HOH . 
F 5 HOH B 5 505 54 HOH HOH . 
F 5 HOH B 6 506 55 HOH HOH . 
F 5 HOH B 7 507 68 HOH HOH . 
F 5 HOH B 8 508 28 HOH HOH . 
F 5 HOH B 9 509 21 HOH HOH . 
F 5 HOH B 10 510 12 HOH HOH . 
F 5 HOH B 11 511 43 HOH HOH . 
F 5 HOH B 12 512 3 HOH HOH . 
F 5 HOH B 13 513 29 HOH HOH . 
F 5 HOH B 14 514 27 HOH HOH . 
F 5 HOH B 15 515 4 HOH HOH . 
F 5 HOH B 16 516 65 HOH HOH . 
F 5 HOH B 17 517 18 HOH HOH . 
F 5 HOH B 18 518 25 HOH HOH . 
F 5 HOH B 19 519 62 HOH HOH . 
F 5 HOH B 20 520 80 HOH HOH . 
F 5 HOH B 21 521 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 4 -24.319 14.017 13.393 1 108.67 ? PB ADP 402 A 1 
HETATM 2 O O1B ADP . . . D 4 -25.441 14.715 12.586 1 106.77 -1 O1B ADP 402 A 1 
HETATM 3 O O2B ADP . . . D 4 -24.799 12.663 13.867 1 110.89 ? O2B ADP 402 A 1 
HETATM 4 O O3B ADP . . . D 4 -23.813 14.913 14.568 1 107.02 ? O3B ADP 402 A 1 
HETATM 5 P PA ADP . . . D 4 -22.361 12.796 11.543 1 106.64 ? PA ADP 402 A 1 
HETATM 6 O O1A ADP . . . D 4 -23.466 12.29 10.558 1 101.37 ? O1A ADP 402 A 1 
HETATM 7 O O2A ADP . . . D 4 -21.85 11.686 12.389 1 108.61 -1 O2A ADP 402 A 1 
HETATM 8 O O3A ADP . . . D 4 -23.03 13.92 12.458 1 108.7 ? O3A ADP 402 A 1 
HETATM 9 O O5' ADP . . . D 4 -21.137 13.517 10.744 1 105.32 ? O5' ADP 402 A 1 
HETATM 10 C C5' ADP . . . D 4 -21.319 14.398 9.615 1 104.45 ? C5' ADP 402 A 1 
HETATM 11 C C4' ADP . . . D 4 -20.207 15.419 9.603 1 105.59 ? C4' ADP 402 A 1 
HETATM 12 O O4' ADP . . . D 4 -18.938 14.768 9.371 1 104.76 ? O4' ADP 402 A 1 
HETATM 13 C C3' ADP . . . D 4 -20.318 16.515 8.545 1 108.43 ? C3' ADP 402 A 1 
HETATM 14 O O3' ADP . . . D 4 -19.824 17.757 9.029 1 110.03 ? O3' ADP 402 A 1 
HETATM 15 C C2' ADP . . . D 4 -19.479 15.964 7.387 1 108.28 ? C2' ADP 402 A 1 
HETATM 16 O O2' ADP . . . D 4 -18.919 16.939 6.509 1 108.92 ? O2' ADP 402 A 1 
HETATM 17 C C1' ADP . . . D 4 -18.395 15.161 8.12 1 103.89 ? C1' ADP 402 A 1 
HETATM 18 N N9 ADP . . . D 4 -17.972 13.968 7.385 1 98.3 ? N9 ADP 402 A 1 
HETATM 19 C C8 ADP . . . D 4 -18.784 13.109 6.687 1 95.93 ? C8 ADP 402 A 1 
HETATM 20 N N7 ADP . . . D 4 -18.136 12.279 5.906 1 94.13 ? N7 ADP 402 A 1 
HETATM 21 C C5 ADP . . . D 4 -16.801 12.598 6.121 1 95.1 ? C5 ADP 402 A 1 
HETATM 22 C C6 ADP . . . D 4 -15.607 12.08 5.588 1 97.55 ? C6 ADP 402 A 1 
HETATM 23 N N6 ADP . . . D 4 -15.567 11.117 4.658 1 95.81 ? N6 ADP 402 A 1 
HETATM 24 N N1 ADP . . . D 4 -14.437 12.58 6.065 1 98.98 ? N1 ADP 402 A 1 
HETATM 25 C C2 ADP . . . D 4 -14.478 13.539 6.998 1 96.16 ? C2 ADP 402 A 1 
HETATM 26 N N3 ADP . . . D 4 -15.546 14.134 7.539 1 94.32 ? N3 ADP 402 A 1 
HETATM 27 C C4 ADP . . . D 4 -16.689 13.618 7.055 1 94.93 ? C4 ADP 402 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#