data_6FM9 # _model_server_result.job_id n3OyiTri6fWmmwmTFPboLA _model_server_result.datetime_utc '2024-11-25 03:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6FM9 # _exptl.entry_id 6FM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.991 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FM9 _cell.length_a 103.799 _cell.length_b 103.799 _cell.length_c 241.099 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.8995 89.892571 281.282167 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id P6L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P6L sing 235 n n C1 O12 P6L sing 236 n n C1 H11 P6L sing 237 n n C1 H12 P6L sing 238 n n C2 O3 P6L sing 239 n n C2 C50 P6L sing 240 n n C2 H2 P6L sing 241 n n O3 HO3 P6L sing 242 n n O4 C5 P6L sing 243 n n O4 C14 P6L sing 244 n n C5 C6 P6L sing 245 n n C5 C7 P6L sing 246 n n C5 H5 P6L sing 247 n n C6 O8 P6L sing 248 n n C6 H61 P6L sing 249 n n C6 H62 P6L sing 250 n n C7 O9 P6L sing 251 n n C7 H71 P6L sing 252 n n C7 H72 P6L sing 253 n n O8 C16 P6L sing 254 n n O9 P11 P6L sing 255 n n O10 P11 P6L doub 256 n n P11 O12 P6L sing 257 n n P11 O13 P6L sing 258 n n O13 H13 P6L sing 259 n n C14 O15 P6L doub 260 n n C14 C18 P6L sing 261 n n C16 O17 P6L doub 262 n n C16 C27 P6L sing 263 n n C18 C19 P6L sing 264 n n C18 H181 P6L sing 265 n n C18 H182 P6L sing 266 n n C19 C20 P6L sing 267 n n C19 H191 P6L sing 268 n n C19 H192 P6L sing 269 n n C20 C21 P6L sing 270 n n C20 H201 P6L sing 271 n n C20 H202 P6L sing 272 n n C21 C22 P6L sing 273 n n C21 H211 P6L sing 274 n n C21 H212 P6L sing 275 n n C22 C23 P6L doub 276 z n C22 H22 P6L sing 277 n n C23 C24 P6L sing 278 n n C23 H23 P6L sing 279 n n C24 C25 P6L sing 280 n n C24 H241 P6L sing 281 n n C24 H242 P6L sing 282 n n C25 C26 P6L sing 283 n n C25 H251 P6L sing 284 n n C25 H252 P6L sing 285 n n C26 C37 P6L sing 286 n n C26 H261 P6L sing 287 n n C26 H262 P6L sing 288 n n C27 C28 P6L sing 289 n n C27 H271 P6L sing 290 n n C27 H272 P6L sing 291 n n C28 C29 P6L sing 292 n n C28 H281 P6L sing 293 n n C28 H282 P6L sing 294 n n C29 C30 P6L sing 295 n n C29 H291 P6L sing 296 n n C29 H292 P6L sing 297 n n C30 C31 P6L sing 298 n n C30 H301 P6L sing 299 n n C30 H302 P6L sing 300 n n C31 C32 P6L sing 301 n n C31 H311 P6L sing 302 n n C31 H312 P6L sing 303 n n C32 C33 P6L sing 304 n n C32 H321 P6L sing 305 n n C32 H322 P6L sing 306 n n C33 C34 P6L doub 307 e n C33 H33 P6L sing 308 n n C34 C35 P6L sing 309 n n C34 H34 P6L sing 310 n n C35 C36 P6L sing 311 n n C35 H351 P6L sing 312 n n C35 H352 P6L sing 313 n n C36 C38 P6L sing 314 n n C36 H361 P6L sing 315 n n C36 H362 P6L sing 316 n n C37 C45 P6L sing 317 n n C37 H371 P6L sing 318 n n C37 H372 P6L sing 319 n n C38 C39 P6L sing 320 n n C38 H381 P6L sing 321 n n C38 H382 P6L sing 322 n n C39 C40 P6L sing 323 n n C39 H391 P6L sing 324 n n C39 H392 P6L sing 325 n n C40 C41 P6L sing 326 n n C40 H401 P6L sing 327 n n C40 H402 P6L sing 328 n n C41 C42 P6L sing 329 n n C41 H411 P6L sing 330 n n C41 H412 P6L sing 331 n n C42 C43 P6L sing 332 n n C42 H421 P6L sing 333 n n C42 H422 P6L sing 334 n n C43 C44 P6L sing 335 n n C43 H431 P6L sing 336 n n C43 H432 P6L sing 337 n n C44 H441 P6L sing 338 n n C44 H442 P6L sing 339 n n C44 H443 P6L sing 340 n n C45 C46 P6L sing 341 n n C45 H451 P6L sing 342 n n C45 H452 P6L sing 343 n n C46 C47 P6L sing 344 n n C46 H461 P6L sing 345 n n C46 H462 P6L sing 346 n n C47 C48 P6L sing 347 n n C47 H471 P6L sing 348 n n C47 H472 P6L sing 349 n n C48 C49 P6L sing 350 n n C48 H481 P6L sing 351 n n C48 H482 P6L sing 352 n n C49 H491 P6L sing 353 n n C49 H492 P6L sing 354 n n C49 H493 P6L sing 355 n n C50 O51 P6L sing 356 n n C50 H501 P6L sing 357 n n C50 H502 P6L sing 358 n n O51 H51 P6L sing 359 n n # _atom_sites.entry_id 6FM9 _atom_sites.fract_transf_matrix[1][1] 0.009634 _atom_sites.fract_transf_matrix[1][2] 0.005562 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id P6L _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id P6L _pdbx_nonpoly_scheme.auth_mon_id P6L _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 P6L . . . B 2 39.023 47.156 110.206 1 205.78 ? O4 P6L 501 A 1 HETATM 2 C C5 P6L . . . B 2 38.671 48.365 110.949 1 205.23 ? C5 P6L 501 A 1 HETATM 3 C C6 P6L . . . B 2 39.939 49.102 111.289 1 200.16 ? C6 P6L 501 A 1 HETATM 4 C C7 P6L . . . B 2 37.76 49.189 110.082 1 209.38 ? C7 P6L 501 A 1 HETATM 5 O O8 P6L . . . B 2 40.702 48.337 112.255 1 194.56 ? O8 P6L 501 A 1 HETATM 6 O O9 P6L . . . B 2 36.721 49.756 110.91 1 213.83 ? O9 P6L 501 A 1 HETATM 7 O O10 P6L . . . B 2 35.472 51.677 112.099 1 218.62 ? O10 P6L 501 A 1 HETATM 8 P P11 P6L . . . B 2 36.598 51.353 111.185 1 218.34 ? P11 P6L 501 A 1 HETATM 9 O O12 P6L . . . B 2 38.025 51.821 111.777 1 218.74 ? O12 P6L 501 A 1 HETATM 10 O O13 P6L . . . B 2 36.472 52.036 109.822 1 220.25 ? O13 P6L 501 A 1 HETATM 11 C C16 P6L . . . B 2 41.226 48.984 113.305 1 188.31 ? C16 P6L 501 A 1 HETATM 12 O O17 P6L . . . B 2 41.046 50.149 113.542 1 188.49 ? O17 P6L 501 A 1 HETATM 13 C C27 P6L . . . B 2 42.086 48.071 114.123 1 182.1 ? C27 P6L 501 A 1 HETATM 14 C C28 P6L . . . B 2 43.562 48.231 113.799 1 176.97 ? C28 P6L 501 A 1 HETATM 15 C C29 P6L . . . B 2 44.456 47.445 114.734 1 172.8 ? C29 P6L 501 A 1 HETATM 16 C C30 P6L . . . B 2 45.932 47.575 114.423 1 168.99 ? C30 P6L 501 A 1 HETATM 17 C C31 P6L . . . B 2 46.818 46.771 115.358 1 165.76 ? C31 P6L 501 A 1 HETATM 18 C C32 P6L . . . B 2 48.18 46.411 114.779 1 162.98 ? C32 P6L 501 A 1 HETATM 19 C C33 P6L . . . B 2 49.123 47.572 114.692 1 161.13 ? C33 P6L 501 A 1 HETATM 20 C C34 P6L . . . B 2 50.447 47.535 114.705 1 160.48 ? C34 P6L 501 A 1 HETATM 21 C C35 P6L . . . B 2 51.341 46.321 114.822 1 159.16 ? C35 P6L 501 A 1 HETATM 22 C C36 P6L . . . B 2 52.85 46.607 114.696 1 157.38 ? C36 P6L 501 A 1 HETATM 23 C C38 P6L . . . B 2 53.435 47.607 115.695 1 155.15 ? C38 P6L 501 A 1 HETATM 24 C C39 P6L . . . B 2 54.945 47.769 115.597 1 153.48 ? C39 P6L 501 A 1 HETATM 25 C C40 P6L . . . B 2 55.476 49.047 116.22 1 152.7 ? C40 P6L 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #