data_6FMD # _model_server_result.job_id UqhjhLYIw9pr4iRzVSEvug _model_server_result.datetime_utc '2024-10-31 07:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6fmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6FMD # _exptl.entry_id 6FMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6FMD _cell.length_a 90.441 _cell.length_b 90.441 _cell.length_c 122.446 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 119 n n N1 C10 FMN doub 120 n n C2 O2 FMN doub 121 n n C2 N3 FMN sing 122 n n N3 C4 FMN sing 123 n n N3 HN3 FMN sing 124 n n C4 O4 FMN doub 125 n n C4 C4A FMN sing 126 n n C4A N5 FMN doub 127 n n C4A C10 FMN sing 128 n n N5 C5A FMN sing 129 n n C5A C6 FMN doub 130 n y C5A C9A FMN sing 131 n y C6 C7 FMN sing 132 n y C6 H6 FMN sing 133 n n C7 C7M FMN sing 134 n n C7 C8 FMN doub 135 n y C7M HM71 FMN sing 136 n n C7M HM72 FMN sing 137 n n C7M HM73 FMN sing 138 n n C8 C8M FMN sing 139 n n C8 C9 FMN sing 140 n y C8M HM81 FMN sing 141 n n C8M HM82 FMN sing 142 n n C8M HM83 FMN sing 143 n n C9 C9A FMN doub 144 n y C9 H9 FMN sing 145 n n C9A N10 FMN sing 146 n n N10 C10 FMN sing 147 n n N10 C1' FMN sing 148 n n C1' C2' FMN sing 149 n n C1' "H1'1" FMN sing 150 n n C1' "H1'2" FMN sing 151 n n C2' O2' FMN sing 152 n n C2' C3' FMN sing 153 n n C2' H2' FMN sing 154 n n O2' HO2' FMN sing 155 n n C3' O3' FMN sing 156 n n C3' C4' FMN sing 157 n n C3' H3' FMN sing 158 n n O3' HO3' FMN sing 159 n n C4' O4' FMN sing 160 n n C4' C5' FMN sing 161 n n C4' H4' FMN sing 162 n n O4' HO4' FMN sing 163 n n C5' O5' FMN sing 164 n n C5' "H5'1" FMN sing 165 n n C5' "H5'2" FMN sing 166 n n O5' P FMN sing 167 n n P O1P FMN doub 168 n n P O2P FMN sing 169 n n P O3P FMN sing 170 n n O2P HOP2 FMN sing 171 n n O3P HOP3 FMN sing 172 n n # _atom_sites.entry_id 6FMD _atom_sites.fract_transf_matrix[1][1] 0.011057 _atom_sites.fract_transf_matrix[1][2] 0.006384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUH A 1 401 1 DUH 433 . C 3 CL A 1 402 1 CL CL . D 3 CL A 1 403 2 CL CL . E 4 FMN A 1 404 402 FMN FMN . F 5 ACT A 1 405 1 ACT ACT . G 5 ACT A 1 406 2 ACT ACT . H 5 ACT A 1 407 3 ACT ACT . I 5 ACT A 1 408 4 ACT ACT . J 5 ACT A 1 409 5 ACT ACT . K 5 ACT A 1 410 6 ACT ACT . L 6 ORO A 1 411 403 ORO ORO . M 7 GOL A 1 412 1 GOL GOL . N 7 GOL A 1 413 2 GOL GOL . O 7 GOL A 1 414 3 GOL GOL . P 7 GOL A 1 415 4 GOL GOL . Q 8 PGE A 1 416 0 PGE PGE . R 8 PGE A 1 417 1 PGE PGE . S 8 PGE A 1 418 2 PGE PGE . T 8 PGE A 1 419 3 PGE PGE . U 8 PGE A 1 420 5 PGE PGE . V 8 PGE A 1 421 7 PGE PGE . W 9 HOH A 1 501 57 HOH HOH . W 9 HOH A 2 502 88 HOH HOH . W 9 HOH A 3 503 62 HOH HOH . W 9 HOH A 4 504 95 HOH HOH . W 9 HOH A 5 505 131 HOH HOH . W 9 HOH A 6 506 175 HOH HOH . W 9 HOH A 7 507 23 HOH HOH . W 9 HOH A 8 508 83 HOH HOH . W 9 HOH A 9 509 39 HOH HOH . W 9 HOH A 10 510 58 HOH HOH . W 9 HOH A 11 511 93 HOH HOH . W 9 HOH A 12 512 79 HOH HOH . W 9 HOH A 13 513 63 HOH HOH . W 9 HOH A 14 514 81 HOH HOH . W 9 HOH A 15 515 112 HOH HOH . W 9 HOH A 16 516 9 HOH HOH . W 9 HOH A 17 517 72 HOH HOH . W 9 HOH A 18 518 22 HOH HOH . W 9 HOH A 19 519 103 HOH HOH . W 9 HOH A 20 520 89 HOH HOH . W 9 HOH A 21 521 104 HOH HOH . W 9 HOH A 22 522 2 HOH HOH . W 9 HOH A 23 523 130 HOH HOH . W 9 HOH A 24 524 64 HOH HOH . W 9 HOH A 25 525 54 HOH HOH . W 9 HOH A 26 526 148 HOH HOH . W 9 HOH A 27 527 156 HOH HOH . W 9 HOH A 28 528 14 HOH HOH . W 9 HOH A 29 529 136 HOH HOH . W 9 HOH A 30 530 19 HOH HOH . W 9 HOH A 31 531 12 HOH HOH . W 9 HOH A 32 532 6 HOH HOH . W 9 HOH A 33 533 5 HOH HOH . W 9 HOH A 34 534 164 HOH HOH . W 9 HOH A 35 535 110 HOH HOH . W 9 HOH A 36 536 16 HOH HOH . W 9 HOH A 37 537 158 HOH HOH . W 9 HOH A 38 538 66 HOH HOH . W 9 HOH A 39 539 80 HOH HOH . W 9 HOH A 40 540 43 HOH HOH . W 9 HOH A 41 541 144 HOH HOH . W 9 HOH A 42 542 46 HOH HOH . W 9 HOH A 43 543 29 HOH HOH . W 9 HOH A 44 544 15 HOH HOH . W 9 HOH A 45 545 21 HOH HOH . W 9 HOH A 46 546 162 HOH HOH . W 9 HOH A 47 547 150 HOH HOH . W 9 HOH A 48 548 74 HOH HOH . W 9 HOH A 49 549 69 HOH HOH . W 9 HOH A 50 550 13 HOH HOH . W 9 HOH A 51 551 152 HOH HOH . W 9 HOH A 52 552 18 HOH HOH . W 9 HOH A 53 553 48 HOH HOH . W 9 HOH A 54 554 38 HOH HOH . W 9 HOH A 55 555 50 HOH HOH . W 9 HOH A 56 556 100 HOH HOH . W 9 HOH A 57 557 76 HOH HOH . W 9 HOH A 58 558 27 HOH HOH . W 9 HOH A 59 559 51 HOH HOH . W 9 HOH A 60 560 7 HOH HOH . W 9 HOH A 61 561 4 HOH HOH . W 9 HOH A 62 562 31 HOH HOH . W 9 HOH A 63 563 121 HOH HOH . W 9 HOH A 64 564 24 HOH HOH . W 9 HOH A 65 565 61 HOH HOH . W 9 HOH A 66 566 20 HOH HOH . W 9 HOH A 67 567 85 HOH HOH . W 9 HOH A 68 568 33 HOH HOH . W 9 HOH A 69 569 161 HOH HOH . W 9 HOH A 70 570 101 HOH HOH . W 9 HOH A 71 571 92 HOH HOH . W 9 HOH A 72 572 155 HOH HOH . W 9 HOH A 73 573 65 HOH HOH . W 9 HOH A 74 574 106 HOH HOH . W 9 HOH A 75 575 147 HOH HOH . W 9 HOH A 76 576 75 HOH HOH . W 9 HOH A 77 577 32 HOH HOH . W 9 HOH A 78 578 78 HOH HOH . W 9 HOH A 79 579 59 HOH HOH . W 9 HOH A 80 580 36 HOH HOH . W 9 HOH A 81 581 55 HOH HOH . W 9 HOH A 82 582 159 HOH HOH . W 9 HOH A 83 583 171 HOH HOH . W 9 HOH A 84 584 34 HOH HOH . W 9 HOH A 85 585 160 HOH HOH . W 9 HOH A 86 586 45 HOH HOH . W 9 HOH A 87 587 52 HOH HOH . W 9 HOH A 88 588 154 HOH HOH . W 9 HOH A 89 589 53 HOH HOH . W 9 HOH A 90 590 124 HOH HOH . W 9 HOH A 91 591 119 HOH HOH . W 9 HOH A 92 592 26 HOH HOH . W 9 HOH A 93 593 49 HOH HOH . W 9 HOH A 94 594 30 HOH HOH . W 9 HOH A 95 595 167 HOH HOH . W 9 HOH A 96 596 151 HOH HOH . W 9 HOH A 97 597 25 HOH HOH . W 9 HOH A 98 598 11 HOH HOH . W 9 HOH A 99 599 17 HOH HOH . W 9 HOH A 100 600 1 HOH HOH . W 9 HOH A 101 601 47 HOH HOH . W 9 HOH A 102 602 145 HOH HOH . W 9 HOH A 103 603 132 HOH HOH . W 9 HOH A 104 604 90 HOH HOH . W 9 HOH A 105 605 8 HOH HOH . W 9 HOH A 106 606 87 HOH HOH . W 9 HOH A 107 607 44 HOH HOH . W 9 HOH A 108 608 68 HOH HOH . W 9 HOH A 109 609 73 HOH HOH . W 9 HOH A 110 610 99 HOH HOH . W 9 HOH A 111 611 41 HOH HOH . W 9 HOH A 112 612 149 HOH HOH . W 9 HOH A 113 613 94 HOH HOH . W 9 HOH A 114 614 35 HOH HOH . W 9 HOH A 115 615 37 HOH HOH . W 9 HOH A 116 616 141 HOH HOH . W 9 HOH A 117 617 102 HOH HOH . W 9 HOH A 118 618 40 HOH HOH . W 9 HOH A 119 619 157 HOH HOH . W 9 HOH A 120 620 3 HOH HOH . W 9 HOH A 121 621 169 HOH HOH . W 9 HOH A 122 622 28 HOH HOH . W 9 HOH A 123 623 82 HOH HOH . W 9 HOH A 124 624 10 HOH HOH . W 9 HOH A 125 625 42 HOH HOH . W 9 HOH A 126 626 97 HOH HOH . W 9 HOH A 127 627 122 HOH HOH . W 9 HOH A 128 628 70 HOH HOH . W 9 HOH A 129 629 142 HOH HOH . W 9 HOH A 130 630 128 HOH HOH . W 9 HOH A 131 631 168 HOH HOH . W 9 HOH A 132 632 84 HOH HOH . W 9 HOH A 133 633 98 HOH HOH . W 9 HOH A 134 634 120 HOH HOH . W 9 HOH A 135 635 113 HOH HOH . W 9 HOH A 136 636 176 HOH HOH . W 9 HOH A 137 637 91 HOH HOH . W 9 HOH A 138 638 166 HOH HOH . W 9 HOH A 139 639 116 HOH HOH . W 9 HOH A 140 640 56 HOH HOH . W 9 HOH A 141 641 60 HOH HOH . W 9 HOH A 142 642 114 HOH HOH . W 9 HOH A 143 643 96 HOH HOH . W 9 HOH A 144 644 77 HOH HOH . W 9 HOH A 145 645 86 HOH HOH . W 9 HOH A 146 646 172 HOH HOH . W 9 HOH A 147 647 118 HOH HOH . W 9 HOH A 148 648 170 HOH HOH . W 9 HOH A 149 649 135 HOH HOH . W 9 HOH A 150 650 67 HOH HOH . W 9 HOH A 151 651 117 HOH HOH . W 9 HOH A 152 652 153 HOH HOH . W 9 HOH A 153 653 71 HOH HOH . W 9 HOH A 154 654 173 HOH HOH . W 9 HOH A 155 655 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 4 34.866 24.102 -8.546 1 13.36 ? N1 FMN 404 A 1 HETATM 2 C C2 FMN . . . E 4 35.691 24.081 -9.615 1 15.34 ? C2 FMN 404 A 1 HETATM 3 O O2 FMN . . . E 4 35.249 24.552 -10.692 1 14.87 ? O2 FMN 404 A 1 HETATM 4 N N3 FMN . . . E 4 36.924 23.528 -9.567 1 15.13 ? N3 FMN 404 A 1 HETATM 5 C C4 FMN . . . E 4 37.465 22.991 -8.466 1 14.9 ? C4 FMN 404 A 1 HETATM 6 O O4 FMN . . . E 4 38.596 22.458 -8.475 1 15.47 ? O4 FMN 404 A 1 HETATM 7 C C4A FMN . . . E 4 36.676 23.035 -7.24 1 14.11 ? C4A FMN 404 A 1 HETATM 8 N N5 FMN . . . E 4 37.141 22.576 -6.051 1 14.47 ? N5 FMN 404 A 1 HETATM 9 C C5A FMN . . . E 4 36.298 22.53 -4.977 1 13.29 ? C5A FMN 404 A 1 HETATM 10 C C6 FMN . . . E 4 36.689 21.967 -3.76 1 12.53 ? C6 FMN 404 A 1 HETATM 11 C C7 FMN . . . E 4 35.874 21.898 -2.661 1 13.81 ? C7 FMN 404 A 1 HETATM 12 C C7M FMN . . . E 4 36.359 21.269 -1.359 1 14.95 ? C7M FMN 404 A 1 HETATM 13 C C8 FMN . . . E 4 34.535 22.392 -2.765 1 12.65 ? C8 FMN 404 A 1 HETATM 14 C C8M FMN . . . E 4 33.566 22.305 -1.604 1 13.65 ? C8M FMN 404 A 1 HETATM 15 C C9 FMN . . . E 4 34.11 22.901 -3.975 1 13.17 ? C9 FMN 404 A 1 HETATM 16 C C9A FMN . . . E 4 34.941 23.009 -5.073 1 13 ? C9A FMN 404 A 1 HETATM 17 N N10 FMN . . . E 4 34.492 23.615 -6.272 1 12.66 ? N10 FMN 404 A 1 HETATM 18 C C10 FMN . . . E 4 35.323 23.577 -7.382 1 13.79 ? C10 FMN 404 A 1 HETATM 19 C C1' FMN . . . E 4 33.135 24.17 -6.412 1 12.44 ? C1' FMN 404 A 1 HETATM 20 C C2' FMN . . . E 4 32.05 23.156 -6.636 1 11.93 ? C2' FMN 404 A 1 HETATM 21 O O2' FMN . . . E 4 32.208 22.57 -7.945 1 12.67 ? O2' FMN 404 A 1 HETATM 22 C C3' FMN . . . E 4 30.671 23.796 -6.56 1 11.71 ? C3' FMN 404 A 1 HETATM 23 O O3' FMN . . . E 4 30.601 24.78 -7.627 1 12.88 ? O3' FMN 404 A 1 HETATM 24 C C4' FMN . . . E 4 30.35 24.464 -5.213 1 12.03 ? C4' FMN 404 A 1 HETATM 25 O O4' FMN . . . E 4 30.958 23.735 -4.134 1 12.52 ? O4' FMN 404 A 1 HETATM 26 C C5' FMN . . . E 4 28.834 24.588 -5.003 1 12.33 ? C5' FMN 404 A 1 HETATM 27 O O5' FMN . . . E 4 28.175 23.325 -4.914 1 12.62 ? O5' FMN 404 A 1 HETATM 28 P P FMN . . . E 4 27.807 22.688 -3.472 1 13.49 ? P FMN 404 A 1 HETATM 29 O O1P FMN . . . E 4 29.123 22.15 -2.88 1 13.42 ? O1P FMN 404 A 1 HETATM 30 O O2P FMN . . . E 4 26.848 21.561 -3.841 1 14 ? O2P FMN 404 A 1 HETATM 31 O O3P FMN . . . E 4 27.171 23.749 -2.641 1 12.85 ? O3P FMN 404 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #